jgi.p|Nanoce1779_2|251387, mRNA_9597 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|251387
Unique Name	mRNA_9597
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1180
Alignment location	scaffold_31:20527..22584 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	251473
Track	FilteredModels2
ProteinId	251387

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:20527..22584 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|251387	gene_9597	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|251387	mRNA_9597-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9597	CDS_9597	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_31:20527..22584+
coding sequence from alignment at scaffold_31:20527..22584+

mRNA sequence

>mRNA_9597 ID=mRNA_9597|Name=jgi.p|Nanoce1779_2|251387|organism=Nannochloropsis oceanica|type=mRNA|length=1180bp
TATTGAGTGGGGCACGGGGTAATTAAAGGAGGACTTTCAGCCGCCGAATA
AACGGCGTCTAGGTTCGTGGCATGCTAAATGTGCGGTCTCGGTGGTGTTT
GTGTGCATGTAGTCGTCGGGTGTGTCTTGTAAGCGTGTCCATCGCAGTCT
CGAAATCGCTTATCCAACAAGTGGCGAGTTGCGCCATTCCTTCCTTCTAA
CCCCCTCCTAACCTGAATCACAGCGCCTGCAGAAAGGTCAGCAGCAGTAG
AAGCAGCCAGGGGAGGAGGAGGAGCAGTAGCAGTCTCAACAGCAGCAGCA
ACAGCAGCAGCAGTCGTCGCTCTGTAGAGCTCCATCGCACGGCACACAGG
CAGCGATGTATTATCATGAGGCACGCAGACATGAGCAGTCCATCAGGAAA
ACGATGCAGACACACAGGAAAAACTTCCAACAAGCCCAAGAGCGACGCCG
CCGCGTGGAGGCCATGCGTGACCCACACCATTTACTTTTAGTGGAGGGGA
GGGCCTGTAAGATCCTGCGTCAGGGGCCACAACAACAGCAGTTGGAGAGC
TCCCTAATGCCCTGGCAGGGGAGGATGGACTCGATGATCGATCGCTTTGA
CGTGCGGGCTATTATGGACTTCCTGCCTTCCTCCCCGCCCTCCTCCTCCT
CCTCCTCTTCCTTTTCTGACCGTCCCTCCGCCTCATCTAGCAGGTATTGG
AGCCGCAAGCTCCTTCCTTCATTCCCTTCCTCCCTCCCTCCCTACCTACC
TCCCCTCCTCCCTTCCTCCCTCCCTTCCTACTCCCTCCCCTCCTCCCTTC
CTCCCTTCTTCCCTTCCTCGACTGACTCCTCTTCTTCTTATCGCCTTCGC
TACCTACCTACCTACCTCCCTACCTCTCCCTCCCTTCCTTCCTCTTGCCA
AAGGGTCTCCACGGAAATCAAGCAAAAGCTTGTATCCTCCCCCTCTTCCT
ACGCTCCCTCAAGAGGGAGGGAGGGAGGGAGGGAAGGGGGAAGGGAACGA
AAAGCTGGATCATCGTCTTCTGGCCTTGCTGGGGAGTGGAAGCGAGCGAG
AGGATGAGGAGGAGGAGAACGAGGAGGAGGAAGAAAGTGACCTTGATATA
TTGGAGGAGAAGGAGGGAGGGGAGGAAGGCGACGCTCAAGCTCTCGATCG
CTTCGCTTCCCTCTATGGAATTGGGGGGAG

protein sequence of jgi.p|Nanoce1779_2|251387

>mRNA_9597-protein ID=mRNA_9597-protein|Name=jgi.p|Nanoce1779_2|251387|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MYYHEARRHEQSIRKTMQTHRKNFQQAQERRRRVEAMRDPHHLLLVEGRA
CKILRQGPQQQQLESSLMPWQGRMDSMIDRFDVRAIMDFLPSSPPSSSSS
SSFSDRPSASSSRYWSRKLLPSFPSSLPPYLPPLLPSSLPSYSLPSSLPP
FFPSSTDSSSSYRLRYLPTYLPTSPSLPSSCQRVSTEIKQKLVSSPSSYA
PSRGREGGREGGRERKAGSSSSGLAGEWKRARG*

mRNA from alignment at scaffold_31:20527..22584+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9597 ID=mRNA_9597|Name=jgi.p|Nanoce1779_2|251387|organism=Nannochloropsis oceanica|type=mRNA|length=2058bp|location=Sequence derived from alignment at scaffold_31:20527..22584+ (Nannochloropsis oceanica)
TATTGAGTGGGGCACGGGGTAATTAAAGGAGGACTTTCAGCCGCCGAATA
AACGGCGTCTAGGTTCGTGGCATGCTAAATGTGCGGTCTCGGTGGTGTTT
GTGTGCATGTAGTCGTCGGGTGTGTCTTGTAAGCGTGTCCATCGCAGTCT
CGAAATCGCTTATCCAACAAGTGGCGAGTTGCGCCATTCCTTCCTTCTAA
CCCCCTCCTAACCTGAATCACAGCGCCTGCAGAAAGGTCAGCAGCAGTAG
AAGCAGCCAGGGGAGGAGGAGGAGCAGTAGCAGTCTCAACAGCAGCAGCA
ACAGCAGCAGCAGTCGTCGCTCTGTAGAGCTCCATCGCACGGCACACAGG
CAGCGATGTATTATCATGAGGCACGCAGACATGAGCAGTCCATCAGGAAA
ACGATGCAGACACACAGGGTAAGTTAAATAGCTCCTCTTATCCTTTCTAT
CGTTCCCTCGCCCTCCCTTCTTTATACTGATAGGCTACACGCAACCCTAA
CCTCACATCTACGCCCCACCGTTCCCTTGCCATTTCAAGGCCAGCTTCCC
ATCTCACCCTGGCTCCCTCCAATCCTCTCCCCTCCCTCCCCTACCTCCCC
TACCTCCCCACGACAGAAAAACTTCCAACAAGCCCAAGAGCGACGCCGCC
GCGTGGAGGCCATGCGTGACCCACACCATTTACTTTTAGTGGAGGGGAGG
GCCTGTAAGATCCTGCGTCAGGGGCCACAACAACAGCAGTTGGAGAGCTC
CCTAATGCCCTGGCAGGGGAGGATGGTGAGTGAGAAAGGAAAGGAAAAGA
AGTGAAACGAGATGGAATGCTGGCGTCTACAGAAGTAAATATTTAAGTAT
CTATGTCATATACCCATACATATAAACGTGTCCCAGGACTCGATGATCGA
TCGCTTTGACGTGCGGGCTATTATGGACTTCCTGCCTTCCTCCCCGCCCT
CCTCCTCCTCCTCCTCTTCCTTTTCTGACCGTCCCTCCGCCTCATCTAGC
AGGTGCGATTGTCAGAAATGTAACGATGCACTCTTCCTCTCTCTTTCGCA
GTCTTCTTTCTGCTTCCTTGTTCCGTTTTAACGCCTCACTACACACCACC
ATCATTCACCTCTTCTTCCCCCGCCCTCCCTCCCCCTTCCCCTTGCCCCC
ACCCGGAAGCGACGCCGACATTTCTTCACACGATGTGCGTGCTCTCTTAA
ACTACGAGCGATACCGGCCCCTTGTTGACGCTCTACGGCACGCCCTTCCT
CCCTCCACCCTCCTCGACAGGTATTGGAGCCGCAAGCTCCTTCCTTCATT
CCCTTCCTCCCTCCCTCCCTACCTACCTCCCCTCCTCCCTTCCTCCCTCC
CTTCCTACTCCCTCCCCTCCTCCCTTCCTCCCTTCTTCCCTTCCTCGACT
GACTCCTCTTCTTCTTATCGCCTTCGCTACCTACCTACCTACCTCCCTAC
CTCTCCCTCCCTTCCTTCCTCTTGCCAAAGGGTCTCCACGGAAATCAAGC
AAAAGCTTGTATCCTCCCCCTCTTCCTACGCTCCCTCAAGCGAGGGAGGA
GGGAGCGGCGGTCCTCCCTCCCTCCCTCCCTCCCGCCCTCCCTCCCACCC
TCCCTTCAAGCCTGCGGGGGTGGAGGGGCATTACGGACCCTCGTCAAATG
CGAGACATGGGAAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAG
GGAGGGAAGGGGGAAGGGAACGAAAAGCTGGATCATCGTCTTCTGGCCTT
GCTGGGGAGTGGAAGCGAGCGAGAGGATGAGGAGGAGGAGAACGAGGAGG
AGGAAGAAAGGTGGGGACCAAGCAAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGACTAGGTATCTTCAACGGCTCATCAAATGT
AATGAATGTTTGTTCCTTTTTTTCTTTTTCTTTTCAAATTTAAATTTAAA
AACAAAACAAAACAGTGACCTTGATATATTGGAGGAGAAGGAGGGAGGGG
AGGAAGGCGACGCTCAAGCTCTCGATCGCTTCGCTTCCCTCTATGGAATT
GGGGGGAG

Coding sequence (CDS) from alignment at scaffold_31:20527..22584+

>mRNA_9597 ID=mRNA_9597|Name=jgi.p|Nanoce1779_2|251387|organism=Nannochloropsis oceanica|type=CDS|length=3510bp|location=Sequence derived from alignment at scaffold_31:20527..22584+ (Nannochloropsis oceanica)
ATGTATTATCATGAGGCACGCAGACATGAGCAGTCCATCAGGAAAACGAT
GCAGACACACAGGAAAAACTTCCAACAAGCCCAAGAGCGACGCCGCCGCG
TGGAGGCCATGCGTGACCCACACCATTTACTTTTAGTGGAGGGGAGGGCC
TGTAAGATCCTGCGTCAGGGGCCACAACAACAGCAGTTGGAGAGCTCCCT
AATGCCCTGGCAGGGGAGGATGGACTCGATGATCGATCGCTTTGACGTGC
GGGCTATTATGGACTTCCTGCCTTCCTCCCCGCCCTCCTCCTCCTCCTCC
TCTTCCTTTTCTGACCGTCCCTCCGCCTCATCTAGCAGGTATTGGAGCCG
CAAGCTCCTTCCTTCATTCCCTTCCTCCCTCCCTCCCTACCTACCTCCCC
TCCTCCCTTCCTCCCTCCCTTCCTACTCCCTCCCCTCCTCCCTTCCTCCC
TTCTTCCCTTCCTCGACTGACTCCTCTTCTTCTTATCGCCTTCGCTACCT
ACCTACCTACCTCCCTACCTCTCCCTCCCTTCCTTCCTCTTGCCAAAGGG
TCTCCACGGAAATCAAGCAAAAGCTTGTATCCTCCCCCTCTTCCTACGCT
CCCTCAAGAGGGAGGGAGGGAGGGAGGGAAGGGGGAAGGGAACGAAAAGC
TGGATCATCGTCTTCTGGCCTTGCTGGGGAGTGGAAGCGAGCGAGAGGAT
GAATGTATTATCATGAGGCACGCAGACATGAGCAGTCCATCAGGAAAACG
ATGCAGACACACAGGAAAAACTTCCAACAAGCCCAAGAGCGACGCCGCCG
CGTGGAGGCCATGCGTGACCCACACCATTTACTTTTAGTGGAGGGGAGGG
CCTGTAAGATCCTGCGTCAGGGGCCACAACAACAGCAGTTGGAGAGCTCC
CTAATGCCCTGGCAGGGGAGGATGGACTCGATGATCGATCGCTTTGACGT
GCGGGCTATTATGGACTTCCTGCCTTCCTCCCCGCCCTCCTCCTCCTCCT
CCTCTTCCTTTTCTGACCGTCCCTCCGCCTCATCTAGCAGGTATTGGAGC
CGCAAGCTCCTTCCTTCATTCCCTTCCTCCCTCCCTCCCTACCTACCTCC
CCTCCTCCCTTCCTCCCTCCCTTCCTACTCCCTCCCCTCCTCCCTTCCTC
CCTTCTTCCCTTCCTCGACTGACTCCTCTTCTTCTTATCGCCTTCGCTAC
CTACCTACCTACCTCCCTACCTCTCCCTCCCTTCCTTCCTCTTGCCAAAG
GGTCTCCACGGAAATCAAGCAAAAGCTTGTATCCTCCCCCTCTTCCTACG
CTCCCTCAAGAGGGAGGGAGGGAGGGAGGGAAGGGGGAAGGGAACGAAAA
GCTGGATCATCGTCTTCTGGCCTTGCTGGGGAGTGGAAGCGAGCGAGAGG
ATGAATGTATTATCATGAGGCACGCAGACATGAGCAGTCCATCAGGAAAA
CGATGCAGACACACAGGAAAAACTTCCAACAAGCCCAAGAGCGACGCCGC
CGCGTGGAGGCCATGCGTGACCCACACCATTTACTTTTAGTGGAGGGGAG
GGCCTGTAAGATCCTGCGTCAGGGGCCACAACAACAGCAGTTGGAGAGCT
CCCTAATGCCCTGGCAGGGGAGGATGGACTCGATGATCGATCGCTTTGAC
GTGCGGGCTATTATGGACTTCCTGCCTTCCTCCCCGCCCTCCTCCTCCTC
CTCCTCTTCCTTTTCTGACCGTCCCTCCGCCTCATCTAGCAGGTATTGGA
GCCGCAAGCTCCTTCCTTCATTCCCTTCCTCCCTCCCTCCCTACCTACCT
CCCCTCCTCCCTTCCTCCCTCCCTTCCTACTCCCTCCCCTCCTCCCTTCC
TCCCTTCTTCCCTTCCTCGACTGACTCCTCTTCTTCTTATCGCCTTCGCT
ACCTACCTACCTACCTCCCTACCTCTCCCTCCCTTCCTTCCTCTTGCCAA
AGGGTCTCCACGGAAATCAAGCAAAAGCTTGTATCCTCCCCCTCTTCCTA
CGCTCCCTCAAGAGGGAGGGAGGGAGGGAGGGAAGGGGGAAGGGAACGAA
AAGCTGGATCATCGTCTTCTGGCCTTGCTGGGGAGTGGAAGCGAGCGAGA
GGATGAATGTATTATCATGAGGCACGCAGACATGAGCAGTCCATCAGGAA
AACGATGCAGACACACAGGAAAAACTTCCAACAAGCCCAAGAGCGACGCC
GCCGCGTGGAGGCCATGCGTGACCCACACCATTTACTTTTAGTGGAGGGG
AGGGCCTGTAAGATCCTGCGTCAGGGGCCACAACAACAGCAGTTGGAGAG
CTCCCTAATGCCCTGGCAGGGGAGGATGGACTCGATGATCGATCGCTTTG
ACGTGCGGGCTATTATGGACTTCCTGCCTTCCTCCCCGCCCTCCTCCTCC
TCCTCCTCTTCCTTTTCTGACCGTCCCTCCGCCTCATCTAGCAGGTATTG
GAGCCGCAAGCTCCTTCCTTCATTCCCTTCCTCCCTCCCTCCCTACCTAC
CTCCCCTCCTCCCTTCCTCCCTCCCTTCCTACTCCCTCCCCTCCTCCCTT
CCTCCCTTCTTCCCTTCCTCGACTGACTCCTCTTCTTCTTATCGCCTTCG
CTACCTACCTACCTACCTCCCTACCTCTCCCTCCCTTCCTTCCTCTTGCC
AAAGGGTCTCCACGGAAATCAAGCAAAAGCTTGTATCCTCCCCCTCTTCC
TACGCTCCCTCAAGAGGGAGGGAGGGAGGGAGGGAAGGGGGAAGGGAACG
AAAAGCTGGATCATCGTCTTCTGGCCTTGCTGGGGAGTGGAAGCGAGCGA
GAGGATGAATGTATTATCATGAGGCACGCAGACATGAGCAGTCCATCAGG
AAAACGATGCAGACACACAGGAAAAACTTCCAACAAGCCCAAGAGCGACG
CCGCCGCGTGGAGGCCATGCGTGACCCACACCATTTACTTTTAGTGGAGG
GGAGGGCCTGTAAGATCCTGCGTCAGGGGCCACAACAACAGCAGTTGGAG
AGCTCCCTAATGCCCTGGCAGGGGAGGATGGACTCGATGATCGATCGCTT
TGACGTGCGGGCTATTATGGACTTCCTGCCTTCCTCCCCGCCCTCCTCCT
CCTCCTCCTCTTCCTTTTCTGACCGTCCCTCCGCCTCATCTAGCAGGTAT
TGGAGCCGCAAGCTCCTTCCTTCATTCCCTTCCTCCCTCCCTCCCTACCT
ACCTCCCCTCCTCCCTTCCTCCCTCCCTTCCTACTCCCTCCCCTCCTCCC
TTCCTCCCTTCTTCCCTTCCTCGACTGACTCCTCTTCTTCTTATCGCCTT
CGCTACCTACCTACCTACCTCCCTACCTCTCCCTCCCTTCCTTCCTCTTG
CCAAAGGGTCTCCACGGAAATCAAGCAAAAGCTTGTATCCTCCCCCTCTT
CCTACGCTCCCTCAAGAGGGAGGGAGGGAGGGAGGGAAGGGGGAAGGGAA
CGAAAAGCTGGATCATCGTCTTCTGGCCTTGCTGGGGAGTGGAAGCGAGC
GAGAGGATGA

Synonyms

Publications