jgi.p|Nanoce1779_2|626302, mRNA_9596 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|626302
Unique NamemRNA_9596
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1012
Alignment locationscaffold_31:19625..20636 -

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Properties
Property NameValue
TranscriptId626388
TrackFilteredModels2
ProteinId626302
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:19625..20636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626302gene_9596Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626302mRNA_9596-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9596CDS_9596Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9596 ID=mRNA_9596|Name=jgi.p|Nanoce1779_2|626302|organism=Nannochloropsis oceanica|type=mRNA|length=1012bp
ACATGCACACAAACACCACCGAGACCGCACATTTAGCATGCCACGAACCT
AGACGCCGTTTATTCGGCGGCTGAAAGTCCTCCTTTAATTACCCCGTGCC
CCACTCAATACCCCATCCCCAAACCATACCCCACACAGCCAACCTGCACC
CACCATGGAGATCGACACCACGCCCACCCAACCTCTCCCACCCTCATCCC
TCTCCCTCTCCCTGCCCCCACGGCCCGACCGTCGTCTCGCGAATCAACTT
CGCCCGCCGCTGTGCGAGCTGGGGCCTCTCAATCGTGCCGATGGCTCCGC
TCGCTTTGCGCACGGCCGCACAAGTGTCTTGGCCGCTGTCTACGGCCCGG
GCGCCCCGCGTTTCTCGCGAAAGGAGCGCATCGAAGGGGCAGCGATCGAA
GTGACCATACATCCGCACAAGGGTGCAGGGACATCGAGCGACAAGGAGAA
GGAAGGAGTAGTCAAAGCGCTGTTGGAAGCTGCAATACTCCTGGACCGGT
TCCCGCGCACGATGATCCACGTTATTTGCCAAGTTTGTGAGGACGACGGC
GGCCTACTGGCCTGTTTAATGAATGCATCAGTTCTTGCGGTCATCAATGC
CGGGATTGACATGAAGTACGTCCCGCTGGCCGTCTCGATGGTCTTTGCCT
CCCCCCCTTCTTCCGCCGTCGGTGCTCCTTCCTCTACCCCACTCCCTAGC
ACCAGCACAACCTACCTCCTCCTCGACCCCCTCCAGGAAGAGGAGACACA
GAGCACGGCGATTGTGACTGTGGCCATTAGCAGCGTGGATACTAATGTGT
TGTCGTACCAGAGCATGGGGATGATGATGCCCGTGCAGCTTTTTGAGGCG
ATCGATGTGGCCAAAAGCGCAACCAAGGCACTGTTGACTTTCATGCGCAT
GACGATTGAAGAGCACAGTAGGCAGACACTAAAACTTAGGTAGAATGCAT
GCCGATTGACTTGTAGATATTGATAACGAAAAAATGAAGAAATTCTACAC
GAATTGTTTTTG
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protein sequence of jgi.p|Nanoce1779_2|626302

>mRNA_9596-protein ID=mRNA_9596-protein|Name=jgi.p|Nanoce1779_2|626302|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MEIDTTPTQPLPPSSLSLSLPPRPDRRLANQLRPPLCELGPLNRADGSAR
FAHGRTSVLAAVYGPGAPRFSRKERIEGAAIEVTIHPHKGAGTSSDKEKE
GVVKALLEAAILLDRFPRTMIHVICQVCEDDGGLLACLMNASVLAVINAG
IDMKYVPLAVSMVFASPPSSAVGAPSSTPLPSTSTTYLLLDPLQEEETQS
TAIVTVAISSVDTNVLSYQSMGMMMPVQLFEAIDVAKSATKALLTFMRMT
IEEHSRQTLKLR*
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mRNA from alignment at scaffold_31:19625..20636-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9596 ID=mRNA_9596|Name=jgi.p|Nanoce1779_2|626302|organism=Nannochloropsis oceanica|type=mRNA|length=1012bp|location=Sequence derived from alignment at scaffold_31:19625..20636- (Nannochloropsis oceanica)
ACATGCACACAAACACCACCGAGACCGCACATTTAGCATGCCACGAACCT
AGACGCCGTTTATTCGGCGGCTGAAAGTCCTCCTTTAATTACCCCGTGCC
CCACTCAATACCCCATCCCCAAACCATACCCCACACAGCCAACCTGCACC
CACCATGGAGATCGACACCACGCCCACCCAACCTCTCCCACCCTCATCCC
TCTCCCTCTCCCTGCCCCCACGGCCCGACCGTCGTCTCGCGAATCAACTT
CGCCCGCCGCTGTGCGAGCTGGGGCCTCTCAATCGTGCCGATGGCTCCGC
TCGCTTTGCGCACGGCCGCACAAGTGTCTTGGCCGCTGTCTACGGCCCGG
GCGCCCCGCGTTTCTCGCGAAAGGAGCGCATCGAAGGGGCAGCGATCGAA
GTGACCATACATCCGCACAAGGGTGCAGGGACATCGAGCGACAAGGAGAA
GGAAGGAGTAGTCAAAGCGCTGTTGGAAGCTGCAATACTCCTGGACCGGT
TCCCGCGCACGATGATCCACGTTATTTGCCAAGTTTGTGAGGACGACGGC
GGCCTACTGGCCTGTTTAATGAATGCATCAGTTCTTGCGGTCATCAATGC
CGGGATTGACATGAAGTACGTCCCGCTGGCCGTCTCGATGGTCTTTGCCT
CCCCCCCTTCTTCCGCCGTCGGTGCTCCTTCCTCTACCCCACTCCCTAGC
ACCAGCACAACCTACCTCCTCCTCGACCCCCTCCAGGAAGAGGAGACACA
GAGCACGGCGATTGTGACTGTGGCCATTAGCAGCGTGGATACTAATGTGT
TGTCGTACCAGAGCATGGGGATGATGATGCCCGTGCAGCTTTTTGAGGCG
ATCGATGTGGCCAAAAGCGCAACCAAGGCACTGTTGACTTTCATGCGCAT
GACGATTGAAGAGCACAGTAGGCAGACACTAAAACTTAGGTAGAATGCAT
GCCGATTGACTTGTAGATATTGATAACGAAAAAATGAAGAAATTCTACAC
GAATTGTTTTTG
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Coding sequence (CDS) from alignment at scaffold_31:19625..20636-

>mRNA_9596 ID=mRNA_9596|Name=jgi.p|Nanoce1779_2|626302|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_31:19625..20636- (Nannochloropsis oceanica)
ATGGAGATCGACACCACGCCCACCCAACCTCTCCCACCCTCATCCCTCTC
CCTCTCCCTGCCCCCACGGCCCGACCGTCGTCTCGCGAATCAACTTCGCC
CGCCGCTGTGCGAGCTGGGGCCTCTCAATCGTGCCGATGGCTCCGCTCGC
TTTGCGCACGGCCGCACAAGTGTCTTGGCCGCTGTCTACGGCCCGGGCGC
CCCGCGTTTCTCGCGAAAGGAGCGCATCGAAGGGGCAGCGATCGAAGTGA
CCATACATCCGCACAAGGGTGCAGGGACATCGAGCGACAAGGAGAAGGAA
GGAGTAGTCAAAGCGCTGTTGGAAGCTGCAATACTCCTGGACCGGTTCCC
GCGCACGATGATCCACGTTATTTGCCAAGTTTGTGAGGACGACGGCGGCC
TACTGGCCTGTTTAATGAATGCATCAGTTCTTGCGGTCATCAATGCCGGG
ATTGACATGAAGTACGTCCCGCTGGCCGTCTCGATGGTCTTTGCCTCCCC
CCCTTCTTCCGCCGTCGGTGCTCCTTCCTCTACCCCACTCCCTAGCACCA
GCACAACCTACCTCCTCCTCGACCCCCTCCAGGAAGAGGAGACACAGAGC
ACGGCGATTGTGACTGTGGCCATTAGCAGCGTGGATACTAATGTGTTGTC
GTACCAGAGCATGGGGATGATGATGCCCGTGCAGCTTTTTGAGGCGATCG
ATGTGGCCAAAAGCGCAACCAAGGCACTGTTGACTTTCATGCGCATGACG
ATTGAAGAGCACAGTAGGCAGACACTAAAACTTAGGTAG
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Synonyms
Publications