jgi.p|Nanoce1779_2|605057, mRNA_9592 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605057
Unique NamemRNA_9592
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length483
Alignment locationscaffold_31:2123..2605 +

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Properties
Property NameValue
TranscriptId605143
TrackFilteredModels2
ProteinId605057
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:2123..2605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605057gene_9592Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605057mRNA_9592-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9592CDS_9592Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9592 ID=mRNA_9592|Name=jgi.p|Nanoce1779_2|605057|organism=Nannochloropsis oceanica|type=mRNA|length=483bp
CAGGAACTGTAGTGTACGGAGAGGGAACGAGAGACGATGCTGAGTGGCCG
TTGGTAAAAGTGATGTTCATGGCTTGCACGCTGGACGTGTAAGTTATTGA
AAAAGAGGCAAATAGAAAAGCTACGCCAAGCAGCCGCGAAACACCCGATG
CCACATCTGGCGCTCCTCAACAAAAACCACAAGTGTCTTCTTCGTGTGTC
TCTGCTGGTGGCGGTTGTTCATGGCACGCACATCTGTGAACGGGTGTGGA
AGGTAGATAAACGTACGGACGGGGGCCTGGGCGATGACCACGGTAAGCAG
CCGAGCTGCGCCCGGTCAAGCCCCGAAAGAGCGCTTTCTCCACCACCACA
TATTATTCCACTACCGTTTTCTCCTCTTTTCGAGGCATGTGGCCGTGGTG
TGTAGCTTATTTTGGGCAGTCGGTCATCCTAAAAGAAAATGCGCATTATT
TTTGTTGGCGAACAATCCGTGGGAGAAGGCAAG
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protein sequence of jgi.p|Nanoce1779_2|605057

>mRNA_9592-protein ID=mRNA_9592-protein|Name=jgi.p|Nanoce1779_2|605057|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MPHLALLNKNHKCLLRVSLLVAVVHGTHICERVWKVDKRTDGGLGDDHGK
QPSCARSSPERALSPPPHIIPLPFSPLFEACGRGV*
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mRNA from alignment at scaffold_31:2123..2605+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9592 ID=mRNA_9592|Name=jgi.p|Nanoce1779_2|605057|organism=Nannochloropsis oceanica|type=mRNA|length=483bp|location=Sequence derived from alignment at scaffold_31:2123..2605+ (Nannochloropsis oceanica)
CAGGAACTGTAGTGTACGGAGAGGGAACGAGAGACGATGCTGAGTGGCCG TTGGTAAAAGTGATGTTCATGGCTTGCACGCTGGACGTGTAAGTTATTGA AAAAGAGGCAAATAGAAAAGCTACGCCAAGCAGCCGCGAAACACCCGATG CCACATCTGGCGCTCCTCAACAAAAACCACAAGTGTCTTCTTCGTGTGTC TCTGCTGGTGGCGGTTGTTCATGGCACGCACATCTGTGAACGGGTGTGGA AGGTAGATAAACGTACGGACGGGGGCCTGGGCGATGACCACGGTAAGCAG CCGAGCTGCGCCCGGTCAAGCCCCGAAAGAGCGCTTTCTCCACCACCACA TATTATTCCACTACCGTTTTCTCCTCTTTTCGAGGCATGTGGCCGTGGTG TGTAGCTTATTTTGGGCAGTCGGTCATCCTAAAAGAAAATGCGCATTATT TTTGTTGGCGAACAATCCGTGGGAGAAGGCAAG
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Coding sequence (CDS) from alignment at scaffold_31:2123..2605+

>mRNA_9592 ID=mRNA_9592|Name=jgi.p|Nanoce1779_2|605057|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at scaffold_31:2123..2605+ (Nannochloropsis oceanica)
ATGCCACATCTGGCGCTCCTCAACAAAAACCACAAGTGTCTTCTTCGTGT
GTCTCTGCTGGTGGCGGTTGTTCATGGCACGCACATCTGTGAACGGGTGT
GGAAGGTAGATAAACGTACGGACGGGGGCCTGGGCGATGACCACGGTAAG
CAGCCGAGCTGCGCCCGGTCAAGCCCCGAAAGAGCGCTTTCTCCACCACC
ACATATTATTCCACTACCGTTTTCTCCTCTTTTCGAGGCATGTGGCCGTG
GTGTGTAG
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Synonyms
Publications