jgi.p|Nanoce1779_2|605053, mRNA_9591 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605053
Unique Name	mRNA_9591
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1081
Alignment location	scaffold_31:1052..2132 +

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Properties


Property Name	Value
TranscriptId	605139
Track	FilteredModels2
ProteinId	605053

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:1052..2132 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605053	gene_9591	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605053	mRNA_9591-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9591	CDS_9591	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_31:1052..2132+
coding sequence from alignment at scaffold_31:1052..2132+

mRNA sequence

>mRNA_9591 ID=mRNA_9591|Name=jgi.p|Nanoce1779_2|605053|organism=Nannochloropsis oceanica|type=mRNA|length=1081bp
AAACCCCTTCTCTCCCCCTACCCTCCTTTGCATTCTCCCGCTTTTCCCGT
GCTTCAGTATAATCGGCGCACCAATGTCTTGACCAGCTGATTAGGAAGAA
AGAAAGACTGCATGGGCTTCCCTGAGAGAGGGGAGGTGAGCGGCTTTCGG
TCATTGCGGGCACCGGTCAATCCACGCCTGAAGCACGTCCTGATTGTACG
TGTGGCCGTCCGCAGCACAGACGGCCTTGGACAAAAGTTCCAGGGACAGG
GGGGCACACCAGCGCGTCCGGCTCCTTCTCCTCCTCCTCCTCTTTCACCC
TCTTCCTCCTCCTCTTCTTCCTCTTCTTCTGCCTCTTCCTCCTCCTCCTC
TCCTTCCTCTTCCTCATTGGTAAAGAGCACTGCACGTGAATAACCATTCT
TACTGCTGCCGCTGTTGATGCTGCTATTCGTCCGTTCCCTCCTCTTCGCG
CAATTCGCCACTGTTGCACCCTTGCTTTGATTTCGAGCAGCTCTGGAGGT
GATAAAGGTGGTGACGAGATGGAGAGAATGAAGGGCAGGGAGGAAAAAGA
TACAAGTAAGATCGCAGAGAATCTTCTATGCAAGCCAAAATATGGCACCC
ACGATTAGACTGTAGAGATTTGCACATGGAAAATTTTCGCTACCTCAATG
CCGCTACCTTCTTCTCAAGTGCTTTGATCTGGGCCTCCTCGTCGCTGTAT
GCATTGGTACGTTAGACGAGTTACGAAAATAGAAGAAAGTATAGTGCCCG
CCTGCAAGGGAAGTCACGTCACGTGATACGCCCCACAGACTGCAGCTACC
AACACAAAACCGCAATCTTCGTCTCCGCATGGCTCCCTACAATCCCTTCT
CCCTCCGCCTTCTCCAAATCGCACTTTCTTCATGCACTACCTTGCCTTCG
CTCCCAACGCCTTCAATTCTTACTCACATTATTGCCTGCTTCCCACCCTT
GCTCTGGGTCTGCTTGCGTTTCTCGGTGGACAAGACTTTGCTTGTCATCT
TTACCGTCCTGCCTGATTTGGGTCGCGGTGATTGTATGAATCGCACCATG
ACTGCCACGAAGAGCTCAACGCAGGAACTGT

protein sequence of jgi.p|Nanoce1779_2|605053

>mRNA_9591-protein ID=mRNA_9591-protein|Name=jgi.p|Nanoce1779_2|605053|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MAPYNPFSLRLLQIALSSCTTLPSLPTPSILTHIIACFPPLLWVCLRFSV
DKTLLVIFTVLPDLGRGDCMNRTMTATKSSTQEL

mRNA from alignment at scaffold_31:1052..2132+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9591 ID=mRNA_9591|Name=jgi.p|Nanoce1779_2|605053|organism=Nannochloropsis oceanica|type=mRNA|length=1081bp|location=Sequence derived from alignment at scaffold_31:1052..2132+ (Nannochloropsis oceanica)
AAACCCCTTCTCTCCCCCTACCCTCCTTTGCATTCTCCCGCTTTTCCCGT
GCTTCAGTATAATCGGCGCACCAATGTCTTGACCAGCTGATTAGGAAGAA
AGAAAGACTGCATGGGCTTCCCTGAGAGAGGGGAGGTGAGCGGCTTTCGG
TCATTGCGGGCACCGGTCAATCCACGCCTGAAGCACGTCCTGATTGTACG
TGTGGCCGTCCGCAGCACAGACGGCCTTGGACAAAAGTTCCAGGGACAGG
GGGGCACACCAGCGCGTCCGGCTCCTTCTCCTCCTCCTCCTCTTTCACCC
TCTTCCTCCTCCTCTTCTTCCTCTTCTTCTGCCTCTTCCTCCTCCTCCTC
TCCTTCCTCTTCCTCATTGGTAAAGAGCACTGCACGTGAATAACCATTCT
TACTGCTGCCGCTGTTGATGCTGCTATTCGTCCGTTCCCTCCTCTTCGCG
CAATTCGCCACTGTTGCACCCTTGCTTTGATTTCGAGCAGCTCTGGAGGT
GATAAAGGTGGTGACGAGATGGAGAGAATGAAGGGCAGGGAGGAAAAAGA
TACAAGTAAGATCGCAGAGAATCTTCTATGCAAGCCAAAATATGGCACCC
ACGATTAGACTGTAGAGATTTGCACATGGAAAATTTTCGCTACCTCAATG
CCGCTACCTTCTTCTCAAGTGCTTTGATCTGGGCCTCCTCGTCGCTGTAT
GCATTGGTACGTTAGACGAGTTACGAAAATAGAAGAAAGTATAGTGCCCG
CCTGCAAGGGAAGTCACGTCACGTGATACGCCCCACAGACTGCAGCTACC
AACACAAAACCGCAATCTTCGTCTCCGCATGGCTCCCTACAATCCCTTCT
CCCTCCGCCTTCTCCAAATCGCACTTTCTTCATGCACTACCTTGCCTTCG
CTCCCAACGCCTTCAATTCTTACTCACATTATTGCCTGCTTCCCACCCTT
GCTCTGGGTCTGCTTGCGTTTCTCGGTGGACAAGACTTTGCTTGTCATCT
TTACCGTCCTGCCTGATTTGGGTCGCGGTGATTGTATGAATCGCACCATG
ACTGCCACGAAGAGCTCAACGCAGGAACTGT

Coding sequence (CDS) from alignment at scaffold_31:1052..2132+

>mRNA_9591 ID=mRNA_9591|Name=jgi.p|Nanoce1779_2|605053|organism=Nannochloropsis oceanica|type=CDS|length=253bp|location=Sequence derived from alignment at scaffold_31:1052..2132+ (Nannochloropsis oceanica)
ATGGCTCCCTACAATCCCTTCTCCCTCCGCCTTCTCCAAATCGCACTTTC
TTCATGCACTACCTTGCCTTCGCTCCCAACGCCTTCAATTCTTACTCACA
TTATTGCCTGCTTCCCACCCTTGCTCTGGGTCTGCTTGCGTTTCTCGGTG
GACAAGACTTTGCTTGTCATCTTTACCGTCCTGCCTGATTTGGGTCGCGG
TGATTGTATGAATCGCACCATGACTGCCACGAAGAGCTCAACGCAGGAAC
TGT

Synonyms

Publications