jgi.p|Nanoce1779_2|313767, mRNA_9590 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|313767
Unique NamemRNA_9590
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length670
Alignment locationscaffold_44:179736..180818 +

Link to JBrowse

Properties
Property NameValue
TranscriptId313853
TrackFilteredModels2
ProteinId313767
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:179736..180818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|313767gene_9590Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|313767mRNA_9590-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9590CDS_9590Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9590 ID=mRNA_9590|Name=jgi.p|Nanoce1779_2|313767|organism=Nannochloropsis oceanica|type=mRNA|length=670bp
TCTTCTTCCTCTTCTTCCTGCTCCTCCTCTTCCAACCGCGGGAGGAAGGG
AGGGAGGGAGGGAAGGAGGGAAGGAGGGGAGTACGTCCCGATGGAGCCGT
TGGTCATCCAAGATCCGCTGAGGCCAAGCAATAATGTGGGGCGTGCCTGC
TTCGGCTTTCCTCAAGTACAGAAAGTTCTAGATCAATGCTTGGAAAGAAT
TTGGGAGATCGGATACGCCGTGCTACAGGACGAAAACGAGTGCGGGAGGG
AGGGCAGGAGGGAGGAGGAGAAGAGTGTGTTGGCCATGGCGCTATTCGGA
GCCACCCATAATCGCCACCGCCATTGGCATCCCTCCCTCCGCCATCACTC
CTCCCCTCCCTCCTTCCCCCACTCCGTTGCAGCTACAGCAGCTCCAACCC
CTCCCCCTCCCCCCATTGCACATTCCCACCCTCCCTCTTTCCCTCCCTCT
CTCCCACATGATCGTTTATCCCAGCCGTCTTCCTCCGTTGTATTACCATC
CATATCCCCATCCCTTGTACCTGCCCTTCTTCCCTCCCTCTCTTCCTCCC
TCCCTCCCTGCCTTGCCTCAATGCCACCGCATGTCGCGGTTTGAGAACAA
ACACGGAGGAGGAGGGGGAGGAGGAGGAAAAGGAAGAGGAGGAGGAGATG
GAAAGGGAAGAGGGAAAGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|313767

>mRNA_9590-protein ID=mRNA_9590-protein|Name=jgi.p|Nanoce1779_2|313767|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MEPLVIQDPLRPSNNVGRACFGFPQVQKVLDQCLERIWEIGYAVLQDENE
CGREGRREEEKSVLAMALFGATHNRHRHWHPSLRHHSSPPSFPHSVAATA
APTPPPPPIAHSHPPSFPPSLPHDRLSQPSSSVVLPSISPSLVPALLPSL
SSSLPPCLASMPPHVAV*
back to top

mRNA from alignment at scaffold_44:179736..180818+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9590 ID=mRNA_9590|Name=jgi.p|Nanoce1779_2|313767|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp|location=Sequence derived from alignment at scaffold_44:179736..180818+ (Nannochloropsis oceanica)
TCTTCTTCCTCTTCTTCCTGCTCCTCCTCTTCCAACCGCGGGAGGAAGGG
AGGGAGGGAGGGAAGGAGGGAAGGAGGGGAGTACGTCCCGATGGAGCCGT
TGGTCATCCAAGATCCGCTGAGGCCAAGCAATAATGTGGGGTAGGTCAAA
GAGGGAGGAAGGGAGGATGAGAAAGAGGGAGAGCGACGAGGGTTATGGAT
GATGCCATTCGCGGAAAAGACATTTATCTTGTGTATATGGGTGTGTATAC
ATGTACAGTCTTCATTTATTTAAACATACCAGCTCATTAAAAATATTAAG
TTATCCATTCATCTTCTTCGTCGAGCACCTACATATGCCGTCCCTATTTC
CCTTCCTTCCTTCCTTCCTCCCTCCCTCATAGGCGTGCCTGCTTCGGCTT
TCCTCAAGTACAGAAAGTTCTAGATCAATGCTTGGAAAGAATTTGGGAGA
TCGGATACGCCGTGCTACAGGACGAAAACGAGTGCGGGAGGGAGGGCAGG
AGGGAGGAGGAGAAGAGTGTGTTGGCCATGGCGCTATTCGGAGCCACCCA
TAATCGGTGAGGAGGGAGGGAGGGAGGGAGGACGGGAGGGAGGAAGGGGA
TTATGCGTACGCATGTCTGTAGCTTGCCCTTACTGTCCTTCTTCACTCAC
ATGTCTCCTTCTCTCTTCTCTCTTCCTTCCTCCTTCCCTGCCTTCTTCTC
CCGTCAGGGACATCATTGACTCGACAGCCACCGCCATTGGCATCCCTCCC
TCCGCCATCACTCCTCCCCTCCCTCCTTCCCCCACTCCGTTGCAGCTACA
GCAGCTCCAACCCCTCCCCCTCCCCCCATTGCACATTCCCACCCTCCCTC
TTTCCCTCCCTCTCTCCCACATGATCGTTTATCCCAGCCGTCTTCCTCCG
TTGTATTACCATCCATATCCCCATCCCTTGTACCTGCCCTTCTTCCCTCC
CTCTCTTCCTCCCTCCCTCCCTGCCTTGCCTCAATGCCACCGCATGTCGC
GGTTTGAGAACAAACACGGAGGAGGAGGGGGAGGAGGAGGAAAAGGAAGA
GGAGGAGGAGATGGAAAGGGAAGAGGGAAAGGG
back to top

Coding sequence (CDS) from alignment at scaffold_44:179736..180818+

>mRNA_9590 ID=mRNA_9590|Name=jgi.p|Nanoce1779_2|313767|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_44:179736..180818+ (Nannochloropsis oceanica)
ATGGAGCCGTTGGTCATCCAAGATCCGCTGAGGCCAAGCAATAATGTGGG
GCGTGCCTGCTTCGGCTTTCCTCAAGTACAGAAAGTTCTAGATCAATGCT
TGGAAAGAATTTGGGAGATCGGATACGCCGTGCTACAGGACGAAAACGAG
TGCGGGAGGGAGGGCAGGAGGGAGGAGGAGAAGAGTGTGTTGGCCATGGC
GCTATTCGGAGCCACCCATAATCGCCACCGCCATTGGCATCCCTCCCTCC
GCCATCACTCCTCCCCTCCCTCCTTCCCCCACTCCGTTGCAGCTACAGCA
GCTCCAACCCCTCCCCCTCCCCCCATTGCACATTCCCACCCTCCCTCTTT
CCCTCCCTCTCTCCCACATGATCGTTTATCCCAGCCGTCTTCCTCCGTTG
TATTACCATCCATATCCCCATCCCTTGTACCTGCCCTTCTTCCCTCCCTC
TCTTCCTCCCTCCCTCCCTGCCTTGCCTCAATGCCACCGCATGTCGCGGT
TTGAATGGAGCCGTTGGTCATCCAAGATCCGCTGAGGCCAAGCAATAATG
TGGGGCGTGCCTGCTTCGGCTTTCCTCAAGTACAGAAAGTTCTAGATCAA
TGCTTGGAAAGAATTTGGGAGATCGGATACGCCGTGCTACAGGACGAAAA
CGAGTGCGGGAGGGAGGGCAGGAGGGAGGAGGAGAAGAGTGTGTTGGCCA
TGGCGCTATTCGGAGCCACCCATAATCGCCACCGCCATTGGCATCCCTCC
CTCCGCCATCACTCCTCCCCTCCCTCCTTCCCCCACTCCGTTGCAGCTAC
AGCAGCTCCAACCCCTCCCCCTCCCCCCATTGCACATTCCCACCCTCCCT
CTTTCCCTCCCTCTCTCCCACATGATCGTTTATCCCAGCCGTCTTCCTCC
GTTGTATTACCATCCATATCCCCATCCCTTGTACCTGCCCTTCTTCCCTC
CCTCTCTTCCTCCCTCCCTCCCTGCCTTGCCTCAATGCCACCGCATGTCG
CGGTTTGAATGGAGCCGTTGGTCATCCAAGATCCGCTGAGGCCAAGCAAT
AATGTGGGGCGTGCCTGCTTCGGCTTTCCTCAAGTACAGAAAGTTCTAGA
TCAATGCTTGGAAAGAATTTGGGAGATCGGATACGCCGTGCTACAGGACG
AAAACGAGTGCGGGAGGGAGGGCAGGAGGGAGGAGGAGAAGAGTGTGTTG
GCCATGGCGCTATTCGGAGCCACCCATAATCGCCACCGCCATTGGCATCC
CTCCCTCCGCCATCACTCCTCCCCTCCCTCCTTCCCCCACTCCGTTGCAG
CTACAGCAGCTCCAACCCCTCCCCCTCCCCCCATTGCACATTCCCACCCT
CCCTCTTTCCCTCCCTCTCTCCCACATGATCGTTTATCCCAGCCGTCTTC
CTCCGTTGTATTACCATCCATATCCCCATCCCTTGTACCTGCCCTTCTTC
CCTCCCTCTCTTCCTCCCTCCCTCCCTGCCTTGCCTCAATGCCACCGCAT
GTCGCGGTTTGA
back to top
Synonyms
Publications