jgi.p|Nanoce1779_2|674475, mRNA_9587 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674475
Unique Name	mRNA_9587
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1339
Alignment location	scaffold_44:165980..167706 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	674561
Track	FilteredModels2
ProteinId	674475

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:165980..167706 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674475	gene_9587	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674475	mRNA_9587-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9587	CDS_9587	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:165980..167706+
coding sequence from alignment at scaffold_44:165980..167706+

mRNA sequence

>mRNA_9587 ID=mRNA_9587|Name=jgi.p|Nanoce1779_2|674475|organism=Nannochloropsis oceanica|type=mRNA|length=1339bp
GGAACAGTGGTGGGTGTGTCGTCCGGCATGCCCTCCTGGCGGCTCGTGTA
ATGAGTAGACTGTCTGTCTCGTGTAAGGGGACATGTTTGAGTCTTTTGAG
GGCATTGATGACAGGTGGCAGGGGGAAGGCGGCCTGCCCTGCTGGGGAGG
AATGATGCTGGATCTTCGCCAAGCTCAAGGCGGCCGTCGTGGGCGATAGC
AACGTTCACATGTGCTACCCCACAAGCAGCTCCTCGTAGCACTCACATTT
GACAACTACACGTCGTATGTACGAGGACAGGCACACGGAGAGAAGAGGAG
GGGGCTTGTGGCTGTGCCTCGTCCCCTTGTCGACTTGTTGCACCCTCCCT
CCCTCCCTCTCTCCCTCCCTTCCTCCCCTCCCCAACACGCCATGCCGTCG
CCCTTGTCCCGTTTCGTATTCCTTGGTGCACCAGGCGTAGGAAAAGGCAC
GTTTGCCAGCATCATCGCCCCACGCTTGAACCTTCGCATCATCACTGCCG
GCGACCTCTTACGGAAAGAGGCCCAGCATAACCCATCCATCTCCTCCCTT
CTCACCCAAGGCTTTCTAGTCCCTGACACCGTTATCCTTCCTCTTATTGC
CAAGGAGCTGGAAAAAGGGAGGGAGGGAGGGAAAGAGGGAGGGTACATCC
TTGATGGTTACCCTCGTCGTCTAACACAGGCCCAGGCGTTGGATGGTTTA
TTGGAAGGAAGGGGGCTGCCGCCCATGCAGCGCGTGATTCACATCGTGCT
GGCTGATTGGGTGGCCATTGCCAAGATGTTGGGCCGCGTCGGATGTCCTC
GTTGCCATCAGAGCTTTAATACAACCCACATTGTCACCGACACCTACGAC
ATGCCCGCCCTACTCCCACCCTCCCTCCCTTCCTCCTCCTCCTCCTCCTC
GTCCCCCTCCTCCTCCTCCTCGTCCCCCTCCTCATTTCCCTCCGCATTCT
GCCCTGGCGGCATCACCTTGCACGAATGCCCTGCCGTTACTGCGGCTGCT
GCAGGGAGGAAAGGAGGGAGGGAAGGAGGGTGGACGAGAAGGAGCGATGA
TACAGAGGAGATCGTGAGAAGGAGACTTGAAATCTATAGAGAGGATGTAC
AGCCATTGCTTGAGTTTTATGAAAAGGAGGGTAAATTAAGGGTGTTCGAA
GTCTTCAAGGGCGTAAAGGACGCGCAGGCCTTGGAGAGGATGATGCTAGC
GGAGGAATAAACGTAGGACGAAACAAACTAACGGATATCAAGAAGAAATA
CTTAAAGAATAAATTAACAAACGAATAGAGAAATCAATAGTAAATAAGCA
AACAAAGAAATACAAACGTGCACGAATAAATTGATAAAT

protein sequence of jgi.p|Nanoce1779_2|674475

>mRNA_9587-protein ID=mRNA_9587-protein|Name=jgi.p|Nanoce1779_2|674475|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MPSPLSRFVFLGAPGVGKGTFASIIAPRLNLRIITAGDLLRKEAQHNPSI
SSLLTQGFLVPDTVILPLIAKELEKGREGGKEGGYILDGYPRRLTQAQAL
DGLLEGRGLPPMQRVIHIVLADWVAIAKMLGRVGCPRCHQSFNTTHIVTD
TYDMPALLPPSLPSSSSSSSSPSSSSSSPSSFPSAFCPGGITLHECPAVT
AAAAGRKGGREGGWTRRSDDTEEIVRRRLEIYREDVQPLLEFYEKEGKLR
VFEVFKGVKDAQALERMMLAEE*

mRNA from alignment at scaffold_44:165980..167706+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9587 ID=mRNA_9587|Name=jgi.p|Nanoce1779_2|674475|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp|location=Sequence derived from alignment at scaffold_44:165980..167706+ (Nannochloropsis oceanica)
GGAACAGTGGTGGGTGTGTCGTCCGGCATGCCCTCCTGGCGGCTCGTGTA
ATGAGTAGACTGTCTGTCTCGTGTAAGGGGACATGTTTGAGTCTTTTGAG
GGCATTGATGACAGGTGGCAGGGGGAAGGCGGCCTGCCCTGCTGGGGAGG
AATGATGCTGGATCTTCGCCAAGCTCAAGGCGGCCGTCGTGGGCGATAGC
AACGTTCACATGTGCTACCCCACAAGCAGCTCCTCGTAGCACTCACATTT
GACAACTACACGTCGTATGTACGAGGACAGGCACACGGAGAGAAGAGGAG
GGGGCTTGTGGCTGTGCCTCGTCCCCTTGTCGACTTGTTGCACCCTCCCT
CCCTCCCTCTCTCCCTCCCTTCCTCCCCTCCCCAACACGCCATGCCGTCG
CCCTTGTCCCGTTTCGTATTCCTTGGTGCACCAGGCGTAGGAAAAGGCAC
GTTTGCCAGCATCATCGCCCCACGCTTGGTACGTTTTGAGCATCCTTTTT
GGCAATCCTGTCTTGAAACTTAAAACTTCTTCCTCCCTCATACACTACAT
TCTCGACTTCCCCCCTCACCCCCTTCCTCCCTCTCACCCCTCCCTCCTTC
CCTCCCCTCCCACGGCAGAACCTTCGCATCATCACTGCCGGCGACCTCTT
ACGGAAAGAGGCCCAGCATAACCCATCCATCTCCTCCCTTCTCACCCAAG
GCTTTCTAGTCCCTGACACCGTTATCCTTCCTCTTATTGCCAAGGAGCTG
GAAAAAGGGAGGGAGGGAGGGAAAGAGGGAGGGTACATCCTTGATGGTTA
CCCTCGTCGTCTAACACAGGCCCAGGCGTTGGATGGTTTATTGGAAGGAA
GGGGGCTGCCGCCCATGCAGCGCGTGATTCACATCGTGCTGGCTGATTGG
GTCAGTACTTACCCTCCCTCCCTCTGTCCCTCCGTCCCTCCGTCCCTCCC
TCCTCATCTCCTTGCCCTCCTCTCCCTTCCCTAGAGCACTCCCATCCACC
TCTTTTGGCAATAATAACTCCTCATTCAACTAACTGTAGTGTCACCAGGC
TGATCACCTCATCCTCCCGCCCCTCCCCTCCCCTCCCCTTTCCTCCCCTC
CCATCCCATCCCTCCCCTCCTCCCTCCCTTCCTTCCTTCCTCCCCCAGGT
GGCCATTGCCAAGATGTTGGGCCGCGTCGGATGTCCTCGTTGCCATCAGA
GCTTTAATACAACCCACATTGTCACCGACACCTACGACATGCCCGCCCTA
CTCCCACCCTCCCTCCCTTCCTCCTCCTCCTCCTCCTCGTCCCCCTCCTC
CTCCTCCTCGTCCCCCTCCTCATTTCCCTCCGCATTCTGCCCTGGCGGCA
TCACCTTGCACGAATGCCCTGCCGTTACTGCGGCTGCTGCAGGGAGGAAA
GGAGGGAGGGAAGGAGGGTGGACGAGAAGGAGCGATGATACAGAGGAGAT
CGTGAGAAGGAGACTTGAAATCTATAGAGAGGATGTACAGCCATTGCTTG
AGTTTTATGAAAAGGAGGGTAAATTAAGGGTGTTCGAAGTCTTCAAGGGC
GTAAAGGACGCGCAGGCCTTGGAGAGGATGATGCTAGCGGAGGAATAAAC
GTAGGACGAAACAAACTAACGGATATCAAGAAGAAATACTTAAAGAATAA
ATTAACAAACGAATAGAGAAATCAATAGTAAATAAGCAAACAAAGAAATA
CAAACGTGCACGAATAAATTGATAAAT

Coding sequence (CDS) from alignment at scaffold_44:165980..167706+

>mRNA_9587 ID=mRNA_9587|Name=jgi.p|Nanoce1779_2|674475|organism=Nannochloropsis oceanica|type=CDS|length=2457bp|location=Sequence derived from alignment at scaffold_44:165980..167706+ (Nannochloropsis oceanica)
ATGCCGTCGCCCTTGTCCCGTTTCGTATTCCTTGGTGCACCAGGCGTAGG
AAAAGGCACGTTTGCCAGCATCATCGCCCCACGCTTGAACCTTCGCATCA
TCACTGCCGGCGACCTCTTACGGAAAGAGGCCCAGCATAACCCATCCATC
TCCTCCCTTCTCACCCAAGGCTTTCTAGTCCCTGACACCGTTATCCTTCC
TCTTATTGCCAAGGAGCTGGAAAAAGGGAGGGAGGGAGGGAAAGAGGGAG
GGTACATCCTTGATGGTTACCCTCGTCGTCTAACACAGGCCCAGGCGTTG
GATGGTTTATTGGAAGGAAGGGGGCTGCCGCCCATGCAGCGCGTGATTCA
CATCGTGCTGGCTGATTGGGTGGCCATTGCCAAGATGTTGGGCCGCGTCG
GATGTCCTCGTTGCCATCAGAGCTTTAATACAACCCACATTGTCACCGAC
ACCTACGACATGCCCGCCCTACTCCCACCCTCCCTCCCTTCCTCCTCCTC
CTCCTCCTCGTCCCCCTCCTCCTCCTCCTCGTCCCCCTCCTCATTTCCCT
CCGCATTCTGCCCTGGCGGCATCACCTTGCACGAATGCCCTGCCGTTACT
GCGGCTGCTGCAGGGAGGAAAGGAGGGAGGGAAGGAGGGTGGACGAGAAG
GAGCGATGATACAGAGGAGATCGTGAGAAGGAGACTTGAAATCTATAGAG
AGGATGTACAGCCATTGCTTGAGTTTTATGAAAAGGAGGGTAAATTAAGG
GTGTTCGAAGTCTTCAAGGGCGTAAAGGACGCGCAGGCCTTGGAGAGGAT
GATGCTAGCGGAGGAATAAATGCCGTCGCCCTTGTCCCGTTTCGTATTCC
TTGGTGCACCAGGCGTAGGAAAAGGCACGTTTGCCAGCATCATCGCCCCA
CGCTTGAACCTTCGCATCATCACTGCCGGCGACCTCTTACGGAAAGAGGC
CCAGCATAACCCATCCATCTCCTCCCTTCTCACCCAAGGCTTTCTAGTCC
CTGACACCGTTATCCTTCCTCTTATTGCCAAGGAGCTGGAAAAAGGGAGG
GAGGGAGGGAAAGAGGGAGGGTACATCCTTGATGGTTACCCTCGTCGTCT
AACACAGGCCCAGGCGTTGGATGGTTTATTGGAAGGAAGGGGGCTGCCGC
CCATGCAGCGCGTGATTCACATCGTGCTGGCTGATTGGGTGGCCATTGCC
AAGATGTTGGGCCGCGTCGGATGTCCTCGTTGCCATCAGAGCTTTAATAC
AACCCACATTGTCACCGACACCTACGACATGCCCGCCCTACTCCCACCCT
CCCTCCCTTCCTCCTCCTCCTCCTCCTCGTCCCCCTCCTCCTCCTCCTCG
TCCCCCTCCTCATTTCCCTCCGCATTCTGCCCTGGCGGCATCACCTTGCA
CGAATGCCCTGCCGTTACTGCGGCTGCTGCAGGGAGGAAAGGAGGGAGGG
AAGGAGGGTGGACGAGAAGGAGCGATGATACAGAGGAGATCGTGAGAAGG
AGACTTGAAATCTATAGAGAGGATGTACAGCCATTGCTTGAGTTTTATGA
AAAGGAGGGTAAATTAAGGGTGTTCGAAGTCTTCAAGGGCGTAAAGGACG
CGCAGGCCTTGGAGAGGATGATGCTAGCGGAGGAATAAATGCCGTCGCCC
TTGTCCCGTTTCGTATTCCTTGGTGCACCAGGCGTAGGAAAAGGCACGTT
TGCCAGCATCATCGCCCCACGCTTGAACCTTCGCATCATCACTGCCGGCG
ACCTCTTACGGAAAGAGGCCCAGCATAACCCATCCATCTCCTCCCTTCTC
ACCCAAGGCTTTCTAGTCCCTGACACCGTTATCCTTCCTCTTATTGCCAA
GGAGCTGGAAAAAGGGAGGGAGGGAGGGAAAGAGGGAGGGTACATCCTTG
ATGGTTACCCTCGTCGTCTAACACAGGCCCAGGCGTTGGATGGTTTATTG
GAAGGAAGGGGGCTGCCGCCCATGCAGCGCGTGATTCACATCGTGCTGGC
TGATTGGGTGGCCATTGCCAAGATGTTGGGCCGCGTCGGATGTCCTCGTT
GCCATCAGAGCTTTAATACAACCCACATTGTCACCGACACCTACGACATG
CCCGCCCTACTCCCACCCTCCCTCCCTTCCTCCTCCTCCTCCTCCTCGTC
CCCCTCCTCCTCCTCCTCGTCCCCCTCCTCATTTCCCTCCGCATTCTGCC
CTGGCGGCATCACCTTGCACGAATGCCCTGCCGTTACTGCGGCTGCTGCA
GGGAGGAAAGGAGGGAGGGAAGGAGGGTGGACGAGAAGGAGCGATGATAC
AGAGGAGATCGTGAGAAGGAGACTTGAAATCTATAGAGAGGATGTACAGC
CATTGCTTGAGTTTTATGAAAAGGAGGGTAAATTAAGGGTGTTCGAAGTC
TTCAAGGGCGTAAAGGACGCGCAGGCCTTGGAGAGGATGATGCTAGCGGA
GGAATAA

Synonyms

Publications