jgi.p|Nanoce1779_2|533701, mRNA_9581 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533701
Unique NamemRNA_9581
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length597
Alignment locationscaffold_44:139889..140598 +

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Properties
Property NameValue
TranscriptId533787
TrackFilteredModels2
ProteinId533701
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:139889..140598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533701gene_9581Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533701mRNA_9581-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9581CDS_9581Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9581 ID=mRNA_9581|Name=jgi.p|Nanoce1779_2|533701|organism=Nannochloropsis oceanica|type=mRNA|length=597bp
ATGCGGTCAAAGTACGGCGCTCCTGGCCAGACAGATCGAGAAGGGTTCGA
TCCTTACGCAGATAGGGTGGGCCCAGGCATCTATGGCGGCCACGTGAAGC
GCGATGAGTGTGGACGAGTAATCTACGGAGAACAATACCAAAATCACAAT
CCTCGCCCCGGGCCTGTGTATGCGGGGGGCGGATATACACCTATAGTGCA
AGCTTTAGGGTTGGGGCAGAAAGCATTGGAGGAGCTTCTGGACGCGTGTC
CAGAGGCCGTAAATGAGGTTTCGACCGGGGGAGCCACACCCCTACATATG
GCTGGGATGAGTAAACGAAATCAAGAAATGACAGAGATCTTGATACGCAG
GGGTGGGAACATTGAGGCCATGGATACTTATGGCTATCGTCCGCTCCATC
GTATGGCCAGCAATAATTTGGCTGTGGGCGCAAAAGCGCTTCTCAAGGCC
GGGGCTGACCCTAAAGCTATCGCCGGGACTGGGGAAGGTGTAGGAAGGAG
GGATAAAGGAGAGACACCGATGGCAGTTGCTCGATCGGCGGGGGCATGGG
ATGTGGTGCAATTGCTGTTGCCTTATTATTCTCCCTCGTCATCCTAA
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protein sequence of jgi.p|Nanoce1779_2|533701

>mRNA_9581-protein ID=mRNA_9581-protein|Name=jgi.p|Nanoce1779_2|533701|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MRSKYGAPGQTDREGFDPYADRVGPGIYGGHVKRDECGRVIYGEQYQNHN
PRPGPVYAGGGYTPIVQALGLGQKALEELLDACPEAVNEVSTGGATPLHM
AGMSKRNQEMTEILIRRGGNIEAMDTYGYRPLHRMASNNLAVGAKALLKA
GADPKAIAGTGEGVGRRDKGETPMAVARSAGAWDVVQLLLPYYSPSSS*
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mRNA from alignment at scaffold_44:139889..140598+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9581 ID=mRNA_9581|Name=jgi.p|Nanoce1779_2|533701|organism=Nannochloropsis oceanica|type=mRNA|length=710bp|location=Sequence derived from alignment at scaffold_44:139889..140598+ (Nannochloropsis oceanica)
ATGCGGTCAAAGTACGGCGCTCCTGGCCAGACAGATCGAGAAGGGTTCGA
TCCTTACGCAGATAGGGTGGGCCCAGGCATCTATGGCGGCCACGTGAAGC
GCGATGAGTGTGGACGAGTAATCTACGGAGAACAATACCAAAATCACAAT
CCTCGCCCCGGGCCTGTGTATGCGGGGGGCGGATATACACCTATAGTGCA
AGCTTTAGGGTTGGGGCAGAAAGCATTGGAGGAGCTTCTGGACGCGTGTC
CAGAGGCCGTAAATGAGGTTTCGACCGGGGGAGCCACACCCCTACATATG
GCTGGGATGAGTAAACGAAATCAAGAAATGACAGAGATCTTGATACGCAG
GGGTGGGAACATGTACGTGCGAAGAGAGGAGGGAGAGAGGGAAAATGGAG
GCATAGCCAAAGTACTCACATGTACACCCATCCCCACACGTGCATACGTA
TACAACCCACATATACACATATCAGTGAGGCCATGGATACTTATGGCTAT
CGTCCGCTCCATCGTATGGCCAGCAATAATTTGGCTGTGGGCGCAAAAGC
GCTTCTCAAGGCCGGGGCTGACCCTAAAGCTATCGCCGGGACTGGGGAAG
GTGTAGGAAGGAGGGATAAAGGAGAGACACCGATGGCAGTTGCTCGATCG
GCGGGGGCATGGGATGTGGTGCAATTGCTGTTGCCTTATTATTCTCCCTC
GTCATCCTAA
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Coding sequence (CDS) from alignment at scaffold_44:139889..140598+

>mRNA_9581 ID=mRNA_9581|Name=jgi.p|Nanoce1779_2|533701|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at scaffold_44:139889..140598+ (Nannochloropsis oceanica)
ATGCGGTCAAAGTACGGCGCTCCTGGCCAGACAGATCGAGAAGGGTTCGA
TCCTTACGCAGATAGGGTGGGCCCAGGCATCTATGGCGGCCACGTGAAGC
GCGATGAGTGTGGACGAGTAATCTACGGAGAACAATACCAAAATCACAAT
CCTCGCCCCGGGCCTGTGTATGCGGGGGGCGGATATACACCTATAGTGCA
AGCTTTAGGGTTGGGGCAGAAAGCATTGGAGGAGCTTCTGGACGCGTGTC
CAGAGGCCGTAAATGAGGTTTCGACCGGGGGAGCCACACCCCTACATATG
GCTGGGATGAGTAAACGAAATCAAGAAATGACAGAGATCTTGATACGCAG
GGGTGGGAACATTGAGGCCATGGATACTTATGGCTATCGTCCGCTCCATC
GTATGGCCAGCAATAATTTGGCTGTGGGCGCAAAAGCGCTTCTCAAGGCC
GGGGCTGACCCTAAAGCTATCGCCGGGACTGGGGAAGGTGTAGGAAGGAG
GGATAAAGGAGAGACACCGATGGCAGTTGCTCGATCGGCGGGGGCATGGG
ATGTGGTGCAATTGCTGTTGCCTTATTATTCTCCCTCGTCATCCTAAATG
CGGTCAAAGTACGGCGCTCCTGGCCAGACAGATCGAGAAGGGTTCGATCC
TTACGCAGATAGGGTGGGCCCAGGCATCTATGGCGGCCACGTGAAGCGCG
ATGAGTGTGGACGAGTAATCTACGGAGAACAATACCAAAATCACAATCCT
CGCCCCGGGCCTGTGTATGCGGGGGGCGGATATACACCTATAGTGCAAGC
TTTAGGGTTGGGGCAGAAAGCATTGGAGGAGCTTCTGGACGCGTGTCCAG
AGGCCGTAAATGAGGTTTCGACCGGGGGAGCCACACCCCTACATATGGCT
GGGATGAGTAAACGAAATCAAGAAATGACAGAGATCTTGATACGCAGGGG
TGGGAACATTGAGGCCATGGATACTTATGGCTATCGTCCGCTCCATCGTA
TGGCCAGCAATAATTTGGCTGTGGGCGCAAAAGCGCTTCTCAAGGCCGGG
GCTGACCCTAAAGCTATCGCCGGGACTGGGGAAGGTGTAGGAAGGAGGGA
TAAAGGAGAGACACCGATGGCAGTTGCTCGATCGGCGGGGGCATGGGATG
TGGTGCAATTGCTGTTGCCTTATTATTCTCCCTCGTCATCCTAA
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Synonyms
Publications