jgi.p|Nanoce1779_2|609213, mRNA_9580 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609213
Unique NamemRNA_9580
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length802
Alignment locationscaffold_44:138299..139100 -

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Properties
Property NameValue
TranscriptId609299
TrackFilteredModels2
ProteinId609213
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:138299..139100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609213gene_9580Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609213mRNA_9580-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9580CDS_9580Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9580 ID=mRNA_9580|Name=jgi.p|Nanoce1779_2|609213|organism=Nannochloropsis oceanica|type=mRNA|length=802bp
ACAGAAGCCTTGCACATCCACATAAAACACAAGTCTTCATTAAAGATATC
ACGGCTCTTTTTTTGTCGTAGCACGCACTGCCTGTTCACTCTCCCGCAAA
ACCATCATGATCGAGAGCCTGCTTCGAGCCCGCCCTCAAAACCGGACCAG
CACCACAGCCTTTATCAATCGTTTTATCGCCCTACCACAACAAAGCTGCC
CTGGCGCCCTAAGTATAGCGACCACAACCACACTGACATTCAAGCGCGGC
TCGCGGCTTCTAGCAATATGTACTTTTATCGCGGCTGCTAATCAAGACCT
CAAAGCCCTCTCTTATTCCCCATCTTTCTGCCAACCTGCCTCTTCCTCCT
CCAATTCCAGCACAGCCCCCAGTCATCGTCCCGTCTCCTCCCCTCCCAAC
CCTAACAATGGTGACGACGACGAGGAAGTAGAAGGCATCTTATCTCGTGC
TCTTGGCCCGTTGGGAGGGGAGATAACATTAAGTGGTGCCTTGGGGTTTG
GTGCCGGGTACTCTCTGAAGAAAATAAGCAAGGCGGCCGCATTTTTCATT
GGAATTGCGTTTGTGGCATCGCAAATATTTGGTCATTTGGGGTATGTGGA
GGTAAATTGGCGGAAGGTTGAGAGGGAGGTAATGCGGTTATTCGATTTGG
ATGGGGATCAGAGATTGACGACAAGGGACGTGGCGATGTATTGGAAAAAG
TTGAAGGGGATGTTGATGCATAAGCTACCAAACACGACGGCGTTCGCGGC
ATTTTTTACCTTAGGGCTGCAGAAGGGTTAGGGTCTGGAATATGAAGGGA
GG
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protein sequence of jgi.p|Nanoce1779_2|609213

>mRNA_9580-protein ID=mRNA_9580-protein|Name=jgi.p|Nanoce1779_2|609213|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MIESLLRARPQNRTSTTAFINRFIALPQQSCPGALSIATTTTLTFKRGSR
LLAICTFIAAANQDLKALSYSPSFCQPASSSSNSSTAPSHRPVSSPPNPN
NGDDDEEVEGILSRALGPLGGEITLSGALGFGAGYSLKKISKAAAFFIGI
AFVASQIFGHLGYVEVNWRKVEREVMRLFDLDGDQRLTTRDVAMYWKKLK
GMLMHKLPNTTAFAAFFTLGLQKG*
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mRNA from alignment at scaffold_44:138299..139100-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9580 ID=mRNA_9580|Name=jgi.p|Nanoce1779_2|609213|organism=Nannochloropsis oceanica|type=mRNA|length=802bp|location=Sequence derived from alignment at scaffold_44:138299..139100- (Nannochloropsis oceanica)
ACAGAAGCCTTGCACATCCACATAAAACACAAGTCTTCATTAAAGATATC
ACGGCTCTTTTTTTGTCGTAGCACGCACTGCCTGTTCACTCTCCCGCAAA
ACCATCATGATCGAGAGCCTGCTTCGAGCCCGCCCTCAAAACCGGACCAG
CACCACAGCCTTTATCAATCGTTTTATCGCCCTACCACAACAAAGCTGCC
CTGGCGCCCTAAGTATAGCGACCACAACCACACTGACATTCAAGCGCGGC
TCGCGGCTTCTAGCAATATGTACTTTTATCGCGGCTGCTAATCAAGACCT
CAAAGCCCTCTCTTATTCCCCATCTTTCTGCCAACCTGCCTCTTCCTCCT
CCAATTCCAGCACAGCCCCCAGTCATCGTCCCGTCTCCTCCCCTCCCAAC
CCTAACAATGGTGACGACGACGAGGAAGTAGAAGGCATCTTATCTCGTGC
TCTTGGCCCGTTGGGAGGGGAGATAACATTAAGTGGTGCCTTGGGGTTTG
GTGCCGGGTACTCTCTGAAGAAAATAAGCAAGGCGGCCGCATTTTTCATT
GGAATTGCGTTTGTGGCATCGCAAATATTTGGTCATTTGGGGTATGTGGA
GGTAAATTGGCGGAAGGTTGAGAGGGAGGTAATGCGGTTATTCGATTTGG
ATGGGGATCAGAGATTGACGACAAGGGACGTGGCGATGTATTGGAAAAAG
TTGAAGGGGATGTTGATGCATAAGCTACCAAACACGACGGCGTTCGCGGC
ATTTTTTACCTTAGGGCTGCAGAAGGGTTAGGGTCTGGAATATGAAGGGA
GG
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Coding sequence (CDS) from alignment at scaffold_44:138299..139100-

>mRNA_9580 ID=mRNA_9580|Name=jgi.p|Nanoce1779_2|609213|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_44:138299..139100- (Nannochloropsis oceanica)
ATGATCGAGAGCCTGCTTCGAGCCCGCCCTCAAAACCGGACCAGCACCAC
AGCCTTTATCAATCGTTTTATCGCCCTACCACAACAAAGCTGCCCTGGCG
CCCTAAGTATAGCGACCACAACCACACTGACATTCAAGCGCGGCTCGCGG
CTTCTAGCAATATGTACTTTTATCGCGGCTGCTAATCAAGACCTCAAAGC
CCTCTCTTATTCCCCATCTTTCTGCCAACCTGCCTCTTCCTCCTCCAATT
CCAGCACAGCCCCCAGTCATCGTCCCGTCTCCTCCCCTCCCAACCCTAAC
AATGGTGACGACGACGAGGAAGTAGAAGGCATCTTATCTCGTGCTCTTGG
CCCGTTGGGAGGGGAGATAACATTAAGTGGTGCCTTGGGGTTTGGTGCCG
GGTACTCTCTGAAGAAAATAAGCAAGGCGGCCGCATTTTTCATTGGAATT
GCGTTTGTGGCATCGCAAATATTTGGTCATTTGGGGTATGTGGAGGTAAA
TTGGCGGAAGGTTGAGAGGGAGGTAATGCGGTTATTCGATTTGGATGGGG
ATCAGAGATTGACGACAAGGGACGTGGCGATGTATTGGAAAAAGTTGAAG
GGGATGTTGATGCATAAGCTACCAAACACGACGGCGTTCGCGGCATTTTT
TACCTTAGGGCTGCAGAAGGGTTAG
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Synonyms
Publications