jgi.p|Nanoce1779_2|574800, mRNA_958 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574800
Unique NamemRNA_958
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1113
Alignment locationscaffold_2:856032..857144 -

Link to JBrowse

Properties
Property NameValue
TranscriptId574886
TrackFilteredModels2
ProteinId574800
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:856032..857144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574800gene_958Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574800mRNA_958-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_958CDS_958Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_958 ID=mRNA_958|Name=jgi.p|Nanoce1779_2|574800|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp
ACAGTAAGACGGGCACGACTCTATCAAGATACCAGCAGGTAGGGCGCACT
TGGTCTCCAGCTTTTGTGGGCGTGCCCAAGTAACTTGCTTCCCCAGAGTC
TCGTTATTCTACATCTCTAAACACTCCGCGGAGAGACTTCTAGCCATGTC
TTTCATGCGTGCGTCCCGAGCCGCATTGCTGTCCAGCAACGCCGCCTTTG
GGGCCATCACCAGGAGCAGCTACAGCATAATCCGGACTAGCAGCAAGGCC
CTGCATGCCTCGCGGCCGGCGCCGCAAAGCACCGAGGTTACCAAGGCCAC
GGGCGGCGTGGACCAACTCCTCAAGACCAAGAACGGCGTCGAGTACGTCG
TGTCCAAGGTAGACGACTTGGTAAATTGGGCGCGCAAGGGCTCGTTGTGG
CCTATGACCTTCGGCCTGGCCTGCTGTGCCGTGGAAATGATGCACTCGGC
GGCCGCACGGTACGATATGGAACGGTTCGGCATGGTCTTCCGTGCGTCCC
CCAGGCAATCGGACGTGATGATAGTGGCCGGTACGCTCACCAACAAGATG
GCACCTGCTCTTCGCAAGGTCTACGATCAGATGCCTGAACCCCGGTGGGT
TGTTTCGATGGGCTCATGCGCGAACGGAGGAGGGTACTACCATTACTCCT
ATGCTGTGGTCCGTGGGTGCGACCGTATCGTGCCTGTTGACATTTACGTT
CCTGGCTGCCCGCCAACGGCCGAAGCCTTATTGTATGGCATGCTTCAGTT
GCAGAAGAAGGTGAAGGGAAATAAGGGTTTATTGCTCAAGCTCCGCAAGT
AGAGGAATTAGAGAGAGGAGGGGAAAGGTTGTGAAGTAAATGCGGTTGAT
TGTTGGTGGGTGTTTGTCTGAGGAAGGTGAAAAGAGGGAGTATCTAAATA
TAAGTTGTGTTGAGCAAGACGAAGTGTGAAGGTTCCCGTCTCTGTCTTTT
GAGGTGTTGCGTGGTGATGTGAAAGTGTCTATTGACACGTTTATCCACCC
ACGGTGTTTGATGGAATGGAAAGAAAGGGAAAATCGAAAATAAGAATGAA
GCCTTGTTGTGAACGGCAACATTCTCGTTGATTACAAAAAGATGTGATGG
ACAGATGTCAAAA
back to top

protein sequence of jgi.p|Nanoce1779_2|574800

>mRNA_958-protein ID=mRNA_958-protein|Name=jgi.p|Nanoce1779_2|574800|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MSFMRASRAALLSSNAAFGAITRSSYSIIRTSSKALHASRPAPQSTEVTK
ATGGVDQLLKTKNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMH
SAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR
WVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGML
QLQKKVKGNKGLLLKLRK*
back to top

mRNA from alignment at scaffold_2:856032..857144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_958 ID=mRNA_958|Name=jgi.p|Nanoce1779_2|574800|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp|location=Sequence derived from alignment at scaffold_2:856032..857144- (Nannochloropsis oceanica)
ACAGTAAGACGGGCACGACTCTATCAAGATACCAGCAGGTAGGGCGCACT
TGGTCTCCAGCTTTTGTGGGCGTGCCCAAGTAACTTGCTTCCCCAGAGTC
TCGTTATTCTACATCTCTAAACACTCCGCGGAGAGACTTCTAGCCATGTC
TTTCATGCGTGCGTCCCGAGCCGCATTGCTGTCCAGCAACGCCGCCTTTG
GGGCCATCACCAGGAGCAGCTACAGCATAATCCGGACTAGCAGCAAGGCC
CTGCATGCCTCGCGGCCGGCGCCGCAAAGCACCGAGGTTACCAAGGCCAC
GGGCGGCGTGGACCAACTCCTCAAGACCAAGAACGGCGTCGAGTACGTCG
TGTCCAAGGTAGACGACTTGGTAAATTGGGCGCGCAAGGGCTCGTTGTGG
CCTATGACCTTCGGCCTGGCCTGCTGTGCCGTGGAAATGATGCACTCGGC
GGCCGCACGGTACGATATGGAACGGTTCGGCATGGTCTTCCGTGCGTCCC
CCAGGCAATCGGACGTGATGATAGTGGCCGGTACGCTCACCAACAAGATG
GCACCTGCTCTTCGCAAGGTCTACGATCAGATGCCTGAACCCCGGTGGGT
TGTTTCGATGGGCTCATGCGCGAACGGAGGAGGGTACTACCATTACTCCT
ATGCTGTGGTCCGTGGGTGCGACCGTATCGTGCCTGTTGACATTTACGTT
CCTGGCTGCCCGCCAACGGCCGAAGCCTTATTGTATGGCATGCTTCAGTT
GCAGAAGAAGGTGAAGGGAAATAAGGGTTTATTGCTCAAGCTCCGCAAGT
AGAGGAATTAGAGAGAGGAGGGGAAAGGTTGTGAAGTAAATGCGGTTGAT
TGTTGGTGGGTGTTTGTCTGAGGAAGGTGAAAAGAGGGAGTATCTAAATA
TAAGTTGTGTTGAGCAAGACGAAGTGTGAAGGTTCCCGTCTCTGTCTTTT
GAGGTGTTGCGTGGTGATGTGAAAGTGTCTATTGACACGTTTATCCACCC
ACGGTGTTTGATGGAATGGAAAGAAAGGGAAAATCGAAAATAAGAATGAA
GCCTTGTTGTGAACGGCAACATTCTCGTTGATTACAAAAAGATGTGATGG
ACAGATGTCAAAA
back to top

Coding sequence (CDS) from alignment at scaffold_2:856032..857144-

>mRNA_958 ID=mRNA_958|Name=jgi.p|Nanoce1779_2|574800|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_2:856032..857144- (Nannochloropsis oceanica)
ATGTCTTTCATGCGTGCGTCCCGAGCCGCATTGCTGTCCAGCAACGCCGC
CTTTGGGGCCATCACCAGGAGCAGCTACAGCATAATCCGGACTAGCAGCA
AGGCCCTGCATGCCTCGCGGCCGGCGCCGCAAAGCACCGAGGTTACCAAG
GCCACGGGCGGCGTGGACCAACTCCTCAAGACCAAGAACGGCGTCGAGTA
CGTCGTGTCCAAGGTAGACGACTTGGTAAATTGGGCGCGCAAGGGCTCGT
TGTGGCCTATGACCTTCGGCCTGGCCTGCTGTGCCGTGGAAATGATGCAC
TCGGCGGCCGCACGGTACGATATGGAACGGTTCGGCATGGTCTTCCGTGC
GTCCCCCAGGCAATCGGACGTGATGATAGTGGCCGGTACGCTCACCAACA
AGATGGCACCTGCTCTTCGCAAGGTCTACGATCAGATGCCTGAACCCCGG
TGGGTTGTTTCGATGGGCTCATGCGCGAACGGAGGAGGGTACTACCATTA
CTCCTATGCTGTGGTCCGTGGGTGCGACCGTATCGTGCCTGTTGACATTT
ACGTTCCTGGCTGCCCGCCAACGGCCGAAGCCTTATTGTATGGCATGCTT
CAGTTGCAGAAGAAGGTGAAGGGAAATAAGGGTTTATTGCTCAAGCTCCG
CAAGTAG
back to top
Synonyms
Publications