jgi.p|Nanoce1779_2|609210, mRNA_9579 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609210
Unique NamemRNA_9579
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1109
Alignment locationscaffold_44:136932..138040 +

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Properties
Property NameValue
TranscriptId609296
TrackFilteredModels2
ProteinId609210
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:136932..138040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609210gene_9579Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609210mRNA_9579-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9579CDS_9579Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9579 ID=mRNA_9579|Name=jgi.p|Nanoce1779_2|609210|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp
ACGAATGTAGCAGTGAGTGCTAGGCATAGTATGGTCGTGAGCGTTTGTAG
TTTGAATCGTGTGGCACTACCGTGGGACCTTAACCGACGACAGTTGGTGC
GCCAATTGAAACTGGCTCCGACGAAGAAGCCGGCTTTGGATTCGGTGAGT
GATTCGATGACTCTCTATATAGATGAATTGGCGGAGACCATTGTTTTGAC
CGTGGGGGTAAGCATATATGTCTATGACGCGAATGGCTCTCCGTTAACAT
ATTTGAATCTGAGCACTTTGCCCTTGCGCAAGAGCCCAGTAGGAGCCAAC
AACCCCGACTACAACATCAGGTCCCGTTCCTTATTCTCATTTCCACCAAC
AACAGATGAAAGCTCTTATGAAATCATGGCGACGAACGTGTTGAATTCCC
CAGCTACTCTTATCTCGGCTTGTTCTGCATTAGGTGATGATTGCTCGCCC
CTCACTCTTTTGACGGGGCACACATACGGGCAGATCCGCTTATGGGTGTT
GGAGTACGGCAGGGAAGAAAGGGAGGCCATGAAGGAGAATGAGAGATACG
GAATGGACTGTCGTTTAATATTGATACAGGAGTTGGCGTATGCGTTGTCG
GCATCGGGAGGGGTGCCCAGTAAGGCGCCTAATACGGCGTTGACTTTATC
GCAGGATTTGCGACGGTTTTACTCTGGAGATACGATGGGGGGAGTGTGTG
CATGGGACGCCTCGTCCTCTGCTCCTTACTTTGGTACTCTAAAAAGGAAT
CACGCCCATGCCTCGGCTAAATGGATGAAGTAGAGGGAGGAAGGTGTCGA
AAGATGCTAGGGTTTGGAGGGTTGGATCGGAACAAGGGAAGAAGTCAGAA
AAATTATGTACAGCGGAAAAGAACAGGGAAAGAGAGCGAAGCAACTGCTC
CAAGAGATGGCATAGGAAATCTTCATTTCAAAAAAGCGGGAAACTGAGTG
GAAAGTAGAAGGAAGAGCAACCACTACGATGTAAAAGTACGTACAGGGTA
ATACACTAGGGAAGCGCTTCGGGCTATCGTATCTGACGCACCAAATCTGA
GGCAACAACAGTAGCATGCAAATAATTGTAAACCAGAAGAAATTGTGAGA
CTAGCGCAG
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protein sequence of jgi.p|Nanoce1779_2|609210

>mRNA_9579-protein ID=mRNA_9579-protein|Name=jgi.p|Nanoce1779_2|609210|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MVVSVCSLNRVALPWDLNRRQLVRQLKLAPTKKPALDSVSDSMTLYIDEL
AETIVLTVGVSIYVYDANGSPLTYLNLSTLPLRKSPVGANNPDYNIRSRS
LFSFPPTTDESSYEIMATNVLNSPATLISACSALGDDCSPLTLLTGHTYG
QIRLWVLEYGREEREAMKENERYGMDCRLILIQELAYALSASGGVPSKAP
NTALTLSQDLRRFYSGDTMGGVCAWDASSSAPYFGTLKRNHAHASAKWMK
*
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mRNA from alignment at scaffold_44:136932..138040+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9579 ID=mRNA_9579|Name=jgi.p|Nanoce1779_2|609210|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp|location=Sequence derived from alignment at scaffold_44:136932..138040+ (Nannochloropsis oceanica)
ACGAATGTAGCAGTGAGTGCTAGGCATAGTATGGTCGTGAGCGTTTGTAG
TTTGAATCGTGTGGCACTACCGTGGGACCTTAACCGACGACAGTTGGTGC
GCCAATTGAAACTGGCTCCGACGAAGAAGCCGGCTTTGGATTCGGTGAGT
GATTCGATGACTCTCTATATAGATGAATTGGCGGAGACCATTGTTTTGAC
CGTGGGGGTAAGCATATATGTCTATGACGCGAATGGCTCTCCGTTAACAT
ATTTGAATCTGAGCACTTTGCCCTTGCGCAAGAGCCCAGTAGGAGCCAAC
AACCCCGACTACAACATCAGGTCCCGTTCCTTATTCTCATTTCCACCAAC
AACAGATGAAAGCTCTTATGAAATCATGGCGACGAACGTGTTGAATTCCC
CAGCTACTCTTATCTCGGCTTGTTCTGCATTAGGTGATGATTGCTCGCCC
CTCACTCTTTTGACGGGGCACACATACGGGCAGATCCGCTTATGGGTGTT
GGAGTACGGCAGGGAAGAAAGGGAGGCCATGAAGGAGAATGAGAGATACG
GAATGGACTGTCGTTTAATATTGATACAGGAGTTGGCGTATGCGTTGTCG
GCATCGGGAGGGGTGCCCAGTAAGGCGCCTAATACGGCGTTGACTTTATC
GCAGGATTTGCGACGGTTTTACTCTGGAGATACGATGGGGGGAGTGTGTG
CATGGGACGCCTCGTCCTCTGCTCCTTACTTTGGTACTCTAAAAAGGAAT
CACGCCCATGCCTCGGCTAAATGGATGAAGTAGAGGGAGGAAGGTGTCGA
AAGATGCTAGGGTTTGGAGGGTTGGATCGGAACAAGGGAAGAAGTCAGAA
AAATTATGTACAGCGGAAAAGAACAGGGAAAGAGAGCGAAGCAACTGCTC
CAAGAGATGGCATAGGAAATCTTCATTTCAAAAAAGCGGGAAACTGAGTG
GAAAGTAGAAGGAAGAGCAACCACTACGATGTAAAAGTACGTACAGGGTA
ATACACTAGGGAAGCGCTTCGGGCTATCGTATCTGACGCACCAAATCTGA
GGCAACAACAGTAGCATGCAAATAATTGTAAACCAGAAGAAATTGTGAGA
CTAGCGCAG
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Coding sequence (CDS) from alignment at scaffold_44:136932..138040+

>mRNA_9579 ID=mRNA_9579|Name=jgi.p|Nanoce1779_2|609210|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_44:136932..138040+ (Nannochloropsis oceanica)
ATGGTCGTGAGCGTTTGTAGTTTGAATCGTGTGGCACTACCGTGGGACCT
TAACCGACGACAGTTGGTGCGCCAATTGAAACTGGCTCCGACGAAGAAGC
CGGCTTTGGATTCGGTGAGTGATTCGATGACTCTCTATATAGATGAATTG
GCGGAGACCATTGTTTTGACCGTGGGGGTAAGCATATATGTCTATGACGC
GAATGGCTCTCCGTTAACATATTTGAATCTGAGCACTTTGCCCTTGCGCA
AGAGCCCAGTAGGAGCCAACAACCCCGACTACAACATCAGGTCCCGTTCC
TTATTCTCATTTCCACCAACAACAGATGAAAGCTCTTATGAAATCATGGC
GACGAACGTGTTGAATTCCCCAGCTACTCTTATCTCGGCTTGTTCTGCAT
TAGGTGATGATTGCTCGCCCCTCACTCTTTTGACGGGGCACACATACGGG
CAGATCCGCTTATGGGTGTTGGAGTACGGCAGGGAAGAAAGGGAGGCCAT
GAAGGAGAATGAGAGATACGGAATGGACTGTCGTTTAATATTGATACAGG
AGTTGGCGTATGCGTTGTCGGCATCGGGAGGGGTGCCCAGTAAGGCGCCT
AATACGGCGTTGACTTTATCGCAGGATTTGCGACGGTTTTACTCTGGAGA
TACGATGGGGGGAGTGTGTGCATGGGACGCCTCGTCCTCTGCTCCTTACT
TTGGTACTCTAAAAAGGAATCACGCCCATGCCTCGGCTAAATGGATGAAG
TAG
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Synonyms
Publications