jgi.p|Nanoce1779_2|609208, mRNA_9578 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609208
Unique Name	mRNA_9578
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2602
Alignment location	scaffold_44:134098..136916 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	609294
Track	FilteredModels2
ProteinId	609208

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:134098..136916 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609208	gene_9578	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609208	mRNA_9578-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9578	CDS_9578	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:134098..136916+
coding sequence from alignment at scaffold_44:134098..136916+

mRNA sequence

>mRNA_9578 ID=mRNA_9578|Name=jgi.p|Nanoce1779_2|609208|organism=Nannochloropsis oceanica|type=mRNA|length=2602bp
CTCCTCCTCGTCGATGGGAAGGGCGACACTGATCCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAACGCAGTACCTCTCCTCCCATTGCCTCCTATTGGCCA
ATCAACAGTACCAGCAGCAGCGGGTCTGGATCAGCACCTCTCCTTCTTCC
CATTAAGATCTTTGATCCTGATTCTTCTCTTCCTCATTTAGAGAAAGGAA
GTCCCATCACCAAAAGTGCTAGTAAGTTTGACTGTGGTGCCGGTGGCAGC
AGCGATTCGTTGCGTCCTTTCAGTCCATTTGCTGGTGGTAGCGATGGTGG
TGGAGGAGGAAGGGAGGGAAGAATAACGCCTTCTCTCCTCTTTTCTCTCA
AGGAGGCGAGTGAATTTGACTTCTTTTCAGAGGGTCTCAACGGCACAGAT
CACAATAGTGATAATGGTGGTGGTGGTGATGATAATGATGATGATGACGA
TGATGGTGATGGCGAGATTACAGAGGAGGAGGAGAACGAGGAGAATGAGG
AGAACGAGAAGGAAAAGGAGGAGGATGAAGAGTAGGAGGAGGGTGTGGAG
GCGATTGAGGAGGAAGTAGTTAGTGCTTACGTGGATAAACACGGTCTGGC
GAGTGTAGCGTCATTTTCTTCAATTACTATTCCTATTCGCATGGTCGATT
GTATCTCTAGCGAGGAAACGGGCTCCCGCCCTAAATCTTTCTCCCCCTCC
ACCCCTTCCACATCTTCTGCTGCATTGGCGGTGCATGATAGTGATGCCAG
CTATCAAGGCATGGTTATGTTCGGAATAGAGAAAGACGAAGAAGGGCATG
CATCAATACCAACCGCAATAGCAGCGAAGGCAACAGCAGTAGCGAGCGAG
AACTCCCTGCGACATTTTGTTTCCCGCCCGAATCGACATCTGATGGTCCA
TCATATGTGTTCGGGAGGGGATTGAGAAAAGCAAATTGGGGAGGAAAGCA
CACCGCCTGCCCTTAGCTTTGTCGCTACCAGTGAAGATGAAAGGGCTAAT
GATGATGATAGGGAGGGAGAAGAGGAAATAGAAGACCTAGTTGGGGCTGA
TGATAAGCTGAAGCCTTTCTTGGTCCCGGGGGACGAGATTAAGCGCCGCT
ACAACTGTGCATGTGTCCAGGGCGTCTACGCCTATCCAGGTATGCTCATG
GTTGCGGAGGGTCATTTGTATATAATTGACAATTACAAGGTGATAGGAGG
CAAACCGGGCACGTGGAATGACTCTGGGGCGGACACCTCGTCGTCTGTTT
ACGAAGTGGTGGAGATCCATCCGGAAGAAGTAACGACGCTGCAGACGGCA
AGCTCGGTGATGGCCCGTCAAACTACCGATGCGTGGCTCTCTAAACCGGC
TTCGCGGAATAATCCGGTGGCTATTTCAGGGCGGCTTTGCACCAAGTGCG
CCCATGGGGAGAGCTTTAGCCCTACTCATCATTGCCACTATTTCCCCTTC
AAAGAAGTGACGTTGGCATATCGGCCCCGCTATCACCTCCGGCAAGTGGC
ACTTGAGATCTTTTTGGCCAATGGCGAGAAATATTTGGTCACTCTCGAGG
AGCCCAAGGTCCGAAACGCGCTGTTGCAAGTCCTCAAGCAGCGGTGCAAT
GAGTCAATGACCGTCATACATAACGCCAAGGTCTCGCCTTTGGATTAAAT
TCAAAGCTTCCTCAATATTACCAATCTGTCCATCTTGACCGAACAGTGGG
TCCGGGAAGAGGTGTCCAACTTTCAGTATCTCATGCACTTAAACACGCTC
TCAGGGCGATCGTATAACGATATGACGCAAAATCCGGTGTTTCCTTGGGT
GCTTGTCGGTTGGGACTCGGAGGAGCTGGACTTCTCCAATCCTGCGACTT
TCCGTGACCTTACCAAGCCCATGGGGGCCTTGAACTCTGCGCGAGAAATG
GAGTTTCGGGAGCGATATTCGCTACTGAAGGAAGAGGAGCAGCAGGGTGA
CTCATAGAAAGCTTTCCATTATGGGACGCACAACTCATCGGCTGCGATTG
TCTTGTACTATTTAGTGCGCTTGCAACCGTTTGCAGAGCAGCACATTCGA
CTTCAGTCTGAGCGCTTTGACCATCCCGACCGTCTGTTCTTAGCGCTGAA
AAAATCTTGGTTGACCTTCTCGGGGGCTGCGGCGTATCAGGGGAGCTTTA
CCAATACCCAAGACGTGCGTGAGCTTATCCCCGAATAATTCTGTCTGCCT
AAAATGCTGACGTATGAAGGCGCGATCGACTTGGAAAGTGAGGAGGACCC
TAATCTCCGCAAGGCCTATGTGGAGCAGATCCATGAGTTTGGCCAGACCC
CTTCGCAGCTTTTTAAGGCTCCATATCCTTCCCGCATATTGGCTTCTCTT
TCTGATGGAGGCAGTGACAAAGACAAGCAACGCCCCGGTTCTTGTCGCAT
ATGATGTATTCAGCCTGTTATGCATGTCTGGGGGCTACACAAAGGCTTGT
TGGCTCGTGAGGTAGAGCCCCATGTTGATGGCTTGGGTGGTGGTGGCAAG
GGTGGTTGAGGAGGATTGGGAGGCGGAGGGGGTGTCGCAGGAAGGGCGAG
CCCACGTAGGCAGCAGCAAATCACGCGACTATGGACGCTAATTTCGGCGC
TG

protein sequence of jgi.p|Nanoce1779_2|609208

>mRNA_9578-protein ID=mRNA_9578-protein|Name=jgi.p|Nanoce1779_2|609208|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MHLNTLSGRSYNDMTQNPVFPWVLVGWDSEELDFSNPATFRDLTKPMGAL
NSAREMEFRERYSLLKEEEQQGDS*

mRNA from alignment at scaffold_44:134098..136916+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9578 ID=mRNA_9578|Name=jgi.p|Nanoce1779_2|609208|organism=Nannochloropsis oceanica|type=mRNA|length=2819bp|location=Sequence derived from alignment at scaffold_44:134098..136916+ (Nannochloropsis oceanica)
CTCCTCCTCGTCGATGGGAAGGGCGACACTGATCCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAACGCAGTACCTCTCCTCCCATTGCCTCCTATTGGCCA
ATCAACAGTACCAGCAGCAGCGGGTCTGGATCAGCACCTCTCCTTCTTCC
CATTAAGATCTTTGATCCTGATTCTTCTCTTCCTCATTTAGAGAAAGGAA
GTCCCATCACCAAAAGTGCTAGTAAGTTTGACTGTGGTGCCGGTGGCAGC
AGCGATTCGTTGCGTCCTTTCAGTCCATTTGCTGGTGGTAGCGATGGTGG
TGGAGGAGGAAGGGAGGGAAGAATAACGCCTTCTCTCCTCTTTTCTCTCA
AGGAGGCGAGTGAATTTGACTTCTTTTCAGAGGGTCTCAACGGCACAGAT
CACAATAGTGATAATGGTGGTGGTGGTGATGATAATGATGATGATGACGA
TGATGGTGATGGCGAGATTACAGAGGAGGAGGAGAACGAGGAGAATGAGG
AGAACGAGAAGGAAAAGGAGGAGGATGAAGAGTAGGAGGAGGGTGTGGAG
GCGATTGAGGAGGAAGTAGTTAGTGCTTACGTGGATAAACACGGTCTGGC
GAGTGTAGCGTCATTTTCTTCAATTACTATTCCTATTCGCATGGTCGATT
GTATCTCTAGCGAGGAAACGGGCTCCCGCCCTAAATCTTTCTCCCCCTCC
ACCCCTTCCACATCTTCTGCTGCATTGGCGGTGCATGATAGTGATGCCAG
CTATCAAGGCATGGTTATGTTCGGAATAGAGAAAGACGAAGAAGGGCATG
CATCAATACCAACCGCAATAGCAGCGAAGGCAACAGCAGTAGCGAGCGAG
AACTCCCTGCGACATTTTGTTTCCCGCCCGAATCGACATCTGATGGTCCA
TCATATGTGTTCGGGAGGGGATTGAGAAAAGCAAATTGGGGAGGAAAGCA
CACCGCCTGCCCTTAGCTTTGTCGCTACCAGTGAAGATGAAAGGGCTAAT
GATGATGATAGGGAGGGAGAAGAGGAAATAGAAGACCTAGTTGGGGCTGA
TGATAAGCTGAAGCCTTTCTTGGTCCCGGGGGACGAGATTAAGCGCCGCT
ACAACTGTGCATGTGTCCAGGGCGTCTACGCCTATCCAGGTATGCTCATG
GTTGCGGAGGGTCATTTGTATATAATTGACAATTACAAGGTGATAGGAGG
CAAACCGGGCACGTGGAATGACTCTGGGGCGGACACCTCGTCGTCTGTTT
ACGAAGTGGTGGAGATCCATCCGGAAGAAGTAACGACGCTGCAGACGGCA
AGCTCGGTGATGGCCCGTCAAACTACCGATGCGTGGCTCTCTAAACCGGC
TTCGCGGAATAATCCGGTGGCTATTTCAGGGCGGCTTTGCACCAAGTGCG
CCCATGGGGAGAGCTTTAGCCCTACTCATCATTGCCACTATTTCCCCTTC
AAAGAAGTGACGTTGGCATATCGGCCCCGCTATCACCTCCGGCAAGTGGC
ACTTGAGATCTTTTTGGCCAATGGCGAGAAATATTTGGTCACTCTCGAGG
AGCCCAAGGTCCGAAACGCGCTGTTGCAAGTCCTCAAGCAGCGGTGCAAT
GAGTCAATGACCGTCATACATAACGCCAAGGTCTCGCCTTTGGATTAAAT
TCAAAGCTTCCTCAATATTACCAATCTGTCCATCTTGACCGAACAGTGGG
TCCGGGAAGAGGTGTCCAACTTTCAGTATCTCATGCACTTAAACACGCTC
TCAGGGCGATCGTATAACGATATGACGCAAAATCCGGTGTTTCCTTGGGT
GCTTGTCGGTTGGGACTCGGAGGAGCTGGACTTCTCCAATCCTGCGACTT
TCCGTGACCTTACCAAGCCCATGGGGGCCTTGAACTCTGCGCGAGAAATG
GAGTTTCGGGAGCGATATTCGCTACTGAAGGAAGAGGAGCAGCAGGGTGA
CTCATAGAAAGCTTTCCATTATGGGACGCACAACTCATCGGCTGCGATTG
TCTTGTACTATTTAGTGCGCTTGCAACCGTTTGCAGAGCAGCACATTCGA
CTTCAGTCTGAGCGCTTTGACCATCCCGACCGTCTGTTCTTAGCGCTGAA
AAAATCTTGGTTGACCTTCTCGGGGGCTGCGGCGTATCAGGGGAGCTTTA
CCAATACCCAAGACGTGCGTGAGCTTATCCCCGAATAATTCTGTCTGCCT
AAAATGCTAGAGAACAAAAATGGATACGATTACGGAGAAGACTTGGAAGG
GCAACGCAACAACGATGTGGGTCTCCCACCTTAGGCGCGAGTTTGTGCGG
CTCCATCGCTAGGCTCTAGAGAGTGAATACGTATCGCACAATCTACATCA
TTGGATTGATCTTATATGGGGGTTCAAGCAACGCGGAAAGCCAGCGGAGG
AGAACTGCAATGTCTATTACTACCTGACGTATGAAGGCGCGATCGACTTG
GAAAGTGAGGAGGACCCTAATCTCCGCAAGGCCTATGTGGAGCAGATCCA
TGAGTTTGGCCAGACCCCTTCGCAGCTTTTTAAGGCTCCATATCCTTCCC
GCATATTGGCTTCTCTTTCTGATGGAGGCAGTGACAAAGACAAGCAACGC
CCCGGTTCTTGTCGCATATGATGTATTCAGCCTGTTATGCATGTCTGGGG
GCTACACAAAGGCTTGTTGGCTCGTGAGGTAGAGCCCCATGTTGATGGCT
TGGGTGGTGGTGGCAAGGGTGGTTGAGGAGGATTGGGAGGCGGAGGGGGT
GTCGCAGGAAGGGCGAGCCCACGTAGGCAGCAGCAAATCACGCGACTATG
GACGCTAATTTCGGCGCTG

Coding sequence (CDS) from alignment at scaffold_44:134098..136916+

>mRNA_9578 ID=mRNA_9578|Name=jgi.p|Nanoce1779_2|609208|organism=Nannochloropsis oceanica|type=CDS|length=225bp|location=Sequence derived from alignment at scaffold_44:134098..136916+ (Nannochloropsis oceanica)
ATGCACTTAAACACGCTCTCAGGGCGATCGTATAACGATATGACGCAAAA
TCCGGTGTTTCCTTGGGTGCTTGTCGGTTGGGACTCGGAGGAGCTGGACT
TCTCCAATCCTGCGACTTTCCGTGACCTTACCAAGCCCATGGGGGCCTTG
AACTCTGCGCGAGAAATGGAGTTTCGGGAGCGATATTCGCTACTGAAGGA
AGAGGAGCAGCAGGGTGACTCATAG

Synonyms

Publications