jgi.p|Nanoce1779_2|313030, mRNA_9577 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|313030
Unique NamemRNA_9577
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1045
Alignment locationscaffold_44:133630..134674 +

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Properties
Property NameValue
TranscriptId313116
TrackFilteredModels2
ProteinId313030
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:133630..134674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|313030gene_9577Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|313030mRNA_9577-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9577CDS_9577Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9577 ID=mRNA_9577|Name=jgi.p|Nanoce1779_2|313030|organism=Nannochloropsis oceanica|type=mRNA|length=1045bp
CAAGGAGGAGGTAGAACTAAGGAGGCAGGTTCGCTGGTCGCAGGAGAGGG
TGAATCGAGAGACGATCGGTGCCAGGCATATGGAGTTTATTTTTACTGAA
TTAATTGAAGGGACCTCTATGGCTGTGGCGCCGGGAGGGGGGTTGGTTAA
AGATATGGGGAAGTGAGATGGATATTTCAGCTCGCACGTGTCAAAGAGGA
GAGAGAAACGCACGAAGGGCGGGGAGGAGGAGGATGAGAATGCACCGGAA
CGATTGATTCAGGGGTTGGTTCTGGATGTGGGAGATAAGGAGTTATTGGG
GGGAATGGAAGGAGGAGTGGGGAAAGAAGATCTAATCTTGGACTCAGCAA
AGAGCCCAATGCGAATTCGAAAATTTTTGCGGCGGGCCAGCTTCCGTCTT
GGTCGAGTGAAGGCTACTACTCCTGTTTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCGTCGATGGGAAGGGCGACACTGA
TCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGCAGTACCTCTCCTCCC
ATTGCCTCCTATTGGCCAATCAACAGTACCAGCAGCAGCGGGTCTGGATC
AGCACCTCTCCTTCTTCCCATTAAGATCTTTGATCCTGATTCTTCTCTTC
CTCATTTAGAGAAAGGAAGTCCCATCACCAAAAGTGCTAGTAAGTTTGAC
TGTGGTGCCGGTGGCAGCAGCGATTCGTTGCGTCCTTTCAGTCCATTTGC
TGGTGGTAGCGATGGTGGTGGAGGAGGAAGGGAGGGAAGAATAACGCCTT
CTCTCCTCTTTTCTCTCAAGGAGGCGAGTGAATTTGACTTCTTTTCAGAG
GGTCTCAACGGCACAGATCACAATAGTGATAATGGTGGTGGTGGTGATGA
TAATGATGATGATGACGATGATGGTGATGGCGAGATTACAGAGGAGGAGG
AGAACGAGGAGAATGAGGAGAACGAGAAGGAAAAGGAGGAGGATGAAGAG
TAGGAGGAGGGTGTGGAGGCGATTGAGGAGGAAGTAGTTAGTGCT
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protein sequence of jgi.p|Nanoce1779_2|313030

>mRNA_9577-protein ID=mRNA_9577-protein|Name=jgi.p|Nanoce1779_2|313030|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MEGGVGKEDLILDSAKSPMRIRKFLRRASFRLGRVKATTPVSSSSSSSSS
SSSSSSSSSMGRATLIQQQQQQQQQQRSTSPPIASYWPINSTSSSGSGSA
PLLLPIKIFDPDSSLPHLEKGSPITKSASKFDCGAGGSSDSLRPFSPFAG
GSDGGGGGREGRITPSLLFSLKEASEFDFFSEGLNGTDHNSDNGGGGDDN
DDDDDDGDGEITEEEENEENEENEKEKEEDEE*
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mRNA from alignment at scaffold_44:133630..134674+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9577 ID=mRNA_9577|Name=jgi.p|Nanoce1779_2|313030|organism=Nannochloropsis oceanica|type=mRNA|length=1045bp|location=Sequence derived from alignment at scaffold_44:133630..134674+ (Nannochloropsis oceanica)
CAAGGAGGAGGTAGAACTAAGGAGGCAGGTTCGCTGGTCGCAGGAGAGGG
TGAATCGAGAGACGATCGGTGCCAGGCATATGGAGTTTATTTTTACTGAA
TTAATTGAAGGGACCTCTATGGCTGTGGCGCCGGGAGGGGGGTTGGTTAA
AGATATGGGGAAGTGAGATGGATATTTCAGCTCGCACGTGTCAAAGAGGA
GAGAGAAACGCACGAAGGGCGGGGAGGAGGAGGATGAGAATGCACCGGAA
CGATTGATTCAGGGGTTGGTTCTGGATGTGGGAGATAAGGAGTTATTGGG
GGGAATGGAAGGAGGAGTGGGGAAAGAAGATCTAATCTTGGACTCAGCAA
AGAGCCCAATGCGAATTCGAAAATTTTTGCGGCGGGCCAGCTTCCGTCTT
GGTCGAGTGAAGGCTACTACTCCTGTTTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCGTCGATGGGAAGGGCGACACTGA
TCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGCAGTACCTCTCCTCCC
ATTGCCTCCTATTGGCCAATCAACAGTACCAGCAGCAGCGGGTCTGGATC
AGCACCTCTCCTTCTTCCCATTAAGATCTTTGATCCTGATTCTTCTCTTC
CTCATTTAGAGAAAGGAAGTCCCATCACCAAAAGTGCTAGTAAGTTTGAC
TGTGGTGCCGGTGGCAGCAGCGATTCGTTGCGTCCTTTCAGTCCATTTGC
TGGTGGTAGCGATGGTGGTGGAGGAGGAAGGGAGGGAAGAATAACGCCTT
CTCTCCTCTTTTCTCTCAAGGAGGCGAGTGAATTTGACTTCTTTTCAGAG
GGTCTCAACGGCACAGATCACAATAGTGATAATGGTGGTGGTGGTGATGA
TAATGATGATGATGACGATGATGGTGATGGCGAGATTACAGAGGAGGAGG
AGAACGAGGAGAATGAGGAGAACGAGAAGGAAAAGGAGGAGGATGAAGAG
TAGGAGGAGGGTGTGGAGGCGATTGAGGAGGAAGTAGTTAGTGCT
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Coding sequence (CDS) from alignment at scaffold_44:133630..134674+

>mRNA_9577 ID=mRNA_9577|Name=jgi.p|Nanoce1779_2|313030|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_44:133630..134674+ (Nannochloropsis oceanica)
ATGGAAGGAGGAGTGGGGAAAGAAGATCTAATCTTGGACTCAGCAAAGAG
CCCAATGCGAATTCGAAAATTTTTGCGGCGGGCCAGCTTCCGTCTTGGTC
GAGTGAAGGCTACTACTCCTGTTTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCGTCGATGGGAAGGGCGACACTGATCCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAACGCAGTACCTCTCCTCCCATTG
CCTCCTATTGGCCAATCAACAGTACCAGCAGCAGCGGGTCTGGATCAGCA
CCTCTCCTTCTTCCCATTAAGATCTTTGATCCTGATTCTTCTCTTCCTCA
TTTAGAGAAAGGAAGTCCCATCACCAAAAGTGCTAGTAAGTTTGACTGTG
GTGCCGGTGGCAGCAGCGATTCGTTGCGTCCTTTCAGTCCATTTGCTGGT
GGTAGCGATGGTGGTGGAGGAGGAAGGGAGGGAAGAATAACGCCTTCTCT
CCTCTTTTCTCTCAAGGAGGCGAGTGAATTTGACTTCTTTTCAGAGGGTC
TCAACGGCACAGATCACAATAGTGATAATGGTGGTGGTGGTGATGATAAT
GATGATGATGACGATGATGGTGATGGCGAGATTACAGAGGAGGAGGAGAA
CGAGGAGAATGAGGAGAACGAGAAGGAAAAGGAGGAGGATGAAGAGTAG
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Synonyms
Publications