jgi.p|Nanoce1779_2|313094, mRNA_9576 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|313094
Unique NamemRNA_9576
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length943
Alignment locationscaffold_44:132697..133758 +

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Properties
Property NameValue
TranscriptId313180
TrackFilteredModels2
ProteinId313094
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:132697..133758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|313094gene_9576Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|313094mRNA_9576-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9576CDS_9576Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9576 ID=mRNA_9576|Name=jgi.p|Nanoce1779_2|313094|organism=Nannochloropsis oceanica|type=mRNA|length=943bp
TCTCTCTTCAGAGCTCAAGTCAAACATACCGTAGGTGGTCTTTTAGGAAT
TACCCTATGGATGAACGACGACATCGAAGAATGAGTCATAAGCACCATTG
ACTTCCACCGCGAAATTCTCCTAATCGGCTTCATCTGGCTCATGAAAGAA
GAACCTGTCCACCCGTCCACCGCCTCCGCCCTCTTGCACCACGCTATCAG
ATATCTGCCTTTCCTCCTCCCCCAGCTCTACACTACGAGAGCCATTGAGA
TGGATAGGCACTTCCTTGACGCCCTCCTTCAGTACTTATACCCCCTCCTC
TCCGATGAAAAACCGAATTGCAGAGAAGCAGCCATATTTCTCTGGCGAGA
GCTTCTGACCTCTACTCCCCATAGGAAGATAGTTGATTCTCTACTCTCTG
TCCCCAAAACTATTATCGTCAAGGGCAAGAAAGGCAAACCGCCGGCGACG
CTTCTCACGCTTAGCCTCCTTAATTGCAGTATCACGAACAGCGACAGCAG
CAGCTCTTTCTCGTCTTCTTTTTCTTCTTCCTCCTCTCTCCTCGTTGCCC
GGAATACTTCTGGAGCGAATATGCAGACAAGGAGTTCCAATCTTGGCTCG
GATCTCTCACTCCTGACATCCAAAAACAGATTTCCAGATCTCTCTTACTG
CACGGGAAAGATTTTAGGCTGTGGCCTGATAATGCCGCCACTGCAGCCCT
TCTCTCCTATCGACAGGGGGTGGCAAGCACGGAGAAGAAGTGGAGGGAGA
CACGGCACGAGTCGTTGAAAAGCCTGACTAAGACAGTGCTTGGCTGGAGG
AAGGAGTTCAAAACCAAGGAGGAGGTAGAACTAAGGAGGCAGGTTCGCTG
GTCGCAGGAGAGGGTGAATCGAGAGACGATCGGTGCCAGGCATATGGAGT
TTATTTTTACTGAATTAATTGAAGGGACCTCTATGGCTGTGGC
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protein sequence of jgi.p|Nanoce1779_2|313094

>mRNA_9576-protein ID=mRNA_9576-protein|Name=jgi.p|Nanoce1779_2|313094|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MKEEPVHPSTASALLHHAIRYLPFLLPQLYTTRAIEMDRHFLDALLQYLY
PLLSDEKPNCREAAIFLWRELLTSTPHRKIVDSLLSVPKTIIVKGKKGKP
PATLLTLSLLNCSITNSDSSSSFSSSFSSSSSLLVARNTSGANMQTRSSN
LGSDLSLLTSKNRFPDLSYCTGKILGCGLIMPPLQPFSPIDRGWQARRRS
GGRHGTSR*
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mRNA from alignment at scaffold_44:132697..133758+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9576 ID=mRNA_9576|Name=jgi.p|Nanoce1779_2|313094|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp|location=Sequence derived from alignment at scaffold_44:132697..133758+ (Nannochloropsis oceanica)
TCTCTCTTCAGAGCTCAAGTCAAACATACCGTAGGTGGTCTTTTAGGAAT
TACCCTATGGATGAACGACGACATCGAAGAATGAGTCATAAGCACCATTG
ACTTCCACCGCGAAATTCTCCTAATCGGCTTCATCTGGCTCATGAAAGAA
GAACCTGTCCACCCGTCCACCGCCTCCGCCCTCTTGCACCACGCTATCAG
ATATCTGCCTTTCCTCCTCCCCCAGCTCTACACTACGAGAGCCATTGAGA
TGGATAGGCACTTCCTTGACGCCCTCCTTCAGTACTTATACCCCCTCCTC
TCCGATGAAAAACCGAATTGCAGAGAAGCAGCCATATTTCTCTGGCGAGA
GCTTCTGACCTCTACTCCCCATAGGAAGATAGTTGATTCTCTACTCTCTG
TCCCCAAAACTATTATCGTCAAGGGCAAGAAAGGCAAACCGCCGGCGACG
CTTCTCACGCTTAGCCTCCTTAATTGCAGTATCACGAACAGCGACAGCAG
CAGCTCTTTCTCGTCTTCTTTTTCTTCTTTCTCCTCCTCCTCCTCCTCCT
TTTCGGGTCTGCTCTCTCCTGAAGGTTTTGACTTCCTACTCAAAGTCAAC
GCTGGTCGCCCCCCCTCCCTCCACCCCTAAGTCTGCCGCATCCTCCTTCC
TCCTCTCTCCTCGTTGCCCGGAATACTTCTGGAGCGAATATGCAGACAAG
GAGTTCCAATCTTGGCTCGGATCTCTCACTCCTGACATCCAAAAACAGAT
TTCCAGATCTCTCTTACTGCACGGGAAAGATTTTAGGCTGTGGCCTGATA
ATGCCGCCACTGCAGCCCTTCTCTCCTATCGACAGGGGGTGGCAAGCACG
GAGAAGAAGTGGAGGGAGACACGGCACGAGTCGTTGAAAAGCCTGACTAA
GACAGTGCTTGGCTGGAGGAAGGAGTTCAAAACCAAGGAGGAGGTAGAAC
TAAGGAGGCAGGTTCGCTGGTCGCAGGAGAGGGTGAATCGAGAGACGATC
GGTGCCAGGCATATGGAGTTTATTTTTACTGAATTAATTGAAGGGACCTC
TATGGCTGTGGC
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Coding sequence (CDS) from alignment at scaffold_44:132697..133758+

>mRNA_9576 ID=mRNA_9576|Name=jgi.p|Nanoce1779_2|313094|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_44:132697..133758+ (Nannochloropsis oceanica)
ATGAAAGAAGAACCTGTCCACCCGTCCACCGCCTCCGCCCTCTTGCACCA
CGCTATCAGATATCTGCCTTTCCTCCTCCCCCAGCTCTACACTACGAGAG
CCATTGAGATGGATAGGCACTTCCTTGACGCCCTCCTTCAGTACTTATAC
CCCCTCCTCTCCGATGAAAAACCGAATTGCAGAGAAGCAGCCATATTTCT
CTGGCGAGAGCTTCTGACCTCTACTCCCCATAGGAAGATAGTTGATTCTC
TACTCTCTGTCCCCAAAACTATTATCGTCAAGGGCAAGAAAGGCAAACCG
CCGGCGACGCTTCTCACGCTTAGCCTCCTTAATTGCAGTATCACGAACAG
CGACAGCAGCAGCTCTTTCTCGTCTTCTTTTTCTTCTTCCTCCTCTCTCC
TCGTTGCCCGGAATACTTCTGGAGCGAATATGCAGACAAGGAGTTCCAAT
CTTGGCTCGGATCTCTCACTCCTGACATCCAAAAACAGATTTCCAGATCT
CTCTTACTGCACGGGAAAGATTTTAGGCTGTGGCCTGATAATGCCGCCAC
TGCAGCCCTTCTCTCCTATCGACAGGGGGTGGCAAGCACGGAGAAGAAGT
GGAGGGAGACACGGCACGAGTCGTTGAATGAAAGAAGAACCTGTCCACCC
GTCCACCGCCTCCGCCCTCTTGCACCACGCTATCAGATATCTGCCTTTCC
TCCTCCCCCAGCTCTACACTACGAGAGCCATTGAGATGGATAGGCACTTC
CTTGACGCCCTCCTTCAGTACTTATACCCCCTCCTCTCCGATGAAAAACC
GAATTGCAGAGAAGCAGCCATATTTCTCTGGCGAGAGCTTCTGACCTCTA
CTCCCCATAGGAAGATAGTTGATTCTCTACTCTCTGTCCCCAAAACTATT
ATCGTCAAGGGCAAGAAAGGCAAACCGCCGGCGACGCTTCTCACGCTTAG
CCTCCTTAATTGCAGTATCACGAACAGCGACAGCAGCAGCTCTTTCTCGT
CTTCTTTTTCTTCTTCCTCCTCTCTCCTCGTTGCCCGGAATACTTCTGGA
GCGAATATGCAGACAAGGAGTTCCAATCTTGGCTCGGATCTCTCACTCCT
GACATCCAAAAACAGATTTCCAGATCTCTCTTACTGCACGGGAAAGATTT
TAGGCTGTGGCCTGATAATGCCGCCACTGCAGCCCTTCTCTCCTATCGAC
AGGGGGTGGCAAGCACGGAGAAGAAGTGGAGGGAGACACGGCACGAGTCG
TTGA
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Synonyms
Publications