jgi.p|Nanoce1779_2|313034, mRNA_9573 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|313034
Unique NamemRNA_9573
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1014
Alignment locationscaffold_44:130276..131289 +

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Properties
Property NameValue
TranscriptId313120
TrackFilteredModels2
ProteinId313034
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:130276..131289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|313034gene_9573Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|313034mRNA_9573-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9573CDS_9573Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9573 ID=mRNA_9573|Name=jgi.p|Nanoce1779_2|313034|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp
TCAAGACCTCGCTGACACATTTTCCTCTTTTCGCACACTCTATCATACAA
ATAGACAACCAAGCAGACAGCTGCTAAACAGCAAGGAAGACCCCTCCTGC
CAGCAGGACCTCCAACGTGGAGCCAGGCACCAAAGCAAGGCAGGACGGGG
TGAGAACGATTGTTTTCGCTCTTTTTCGCGAGCAATATCGCGGCGTATGC
CTGCTGTAAAGATAATAACGTGGACGCCAACGTCCCAAGAGCCCCTTCTT
CCCGGAGAATGGCTGAGGTCCTCGAGGCAGCCACCACAGACCTGACGTTC
CTTCTAGCCCCAGCCCCGAAAGGTCTCGGTCTAGATTTGGAAGACCGCTC
CCTTACAGACACCATTGAACGCAATCCCGAGTCCCTCACGAAGGACATAG
TCGCAGATCTTACCAAGCATCCCCTCATCGCCGTGGTAGCTGGAAAGGTC
TTTGCGGTGCGTTCCGCGTCCTTGCCGAATGTCATCCGGGCCATTGGTCG
ACTCTTGCAATTCTGCGACCCCCACACCAGCAAACTGTGGGAAGAATTCA
GGTGCTCTGGTATGCTGGAAGAGCTACTTACACGCATGAGGGTAGTGGTG
GAAAAGGGACGGTACCTCTTAGCCACTGATATACTCGGGGCTTTTTTACC
TTTGCTTTACGTAGGGGATGGTTTGAGCTGTGACGGCGACAAGACGGACG
ATTGCGGCGCTGACTTCCTCGAGCGGCTCGCATTAAACTGCAGTTTCCAC
ACACAAGCCCTATTCTGTTGGGACGCTAGAGAGCACCTCTTCGTTCGCGG
CCTTGGGTGGCGGGGGGAGGAAGTTTCAGCAGTGCATTTTGGCCGTGCAT
GCCTTGATTTCCCTCCTTGTCCCTCTCGATCTGCTCGACTCTGCCCTAGT
CAATCAGTCTTCTCTGCGTGAAGGAGGGAGAGAAGGGAGAAACAGGAGTT
GAAGGGCGGGGAATGGAGACTTTTCCGGTGGTTGGGCAGCTGGAGACAGG
GTTTGATGGCCTTC
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protein sequence of jgi.p|Nanoce1779_2|313034

>mRNA_9573-protein ID=mRNA_9573-protein|Name=jgi.p|Nanoce1779_2|313034|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MAEVLEAATTDLTFLLAPAPKGLGLDLEDRSLTDTIERNPESLTKDIVAD
LTKHPLIAVVAGKVFAVRSASLPNVIRAIGRLLQFCDPHTSKLWEEFRCS
GMLEELLTRMRVVVEKGRYLLATDILGAFLPLLYVGDGLSCDGDKTDDCG
ADFLERLALNCSFHTQALFCWDAREHLFVRGLGWRGEEVSAVHFGRACLD
FPPCPSRSARLCPSQSVFSA*
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mRNA from alignment at scaffold_44:130276..131289+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9573 ID=mRNA_9573|Name=jgi.p|Nanoce1779_2|313034|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp|location=Sequence derived from alignment at scaffold_44:130276..131289+ (Nannochloropsis oceanica)
TCAAGACCTCGCTGACACATTTTCCTCTTTTCGCACACTCTATCATACAA
ATAGACAACCAAGCAGACAGCTGCTAAACAGCAAGGAAGACCCCTCCTGC
CAGCAGGACCTCCAACGTGGAGCCAGGCACCAAAGCAAGGCAGGACGGGG
TGAGAACGATTGTTTTCGCTCTTTTTCGCGAGCAATATCGCGGCGTATGC
CTGCTGTAAAGATAATAACGTGGACGCCAACGTCCCAAGAGCCCCTTCTT
CCCGGAGAATGGCTGAGGTCCTCGAGGCAGCCACCACAGACCTGACGTTC
CTTCTAGCCCCAGCCCCGAAAGGTCTCGGTCTAGATTTGGAAGACCGCTC
CCTTACAGACACCATTGAACGCAATCCCGAGTCCCTCACGAAGGACATAG
TCGCAGATCTTACCAAGCATCCCCTCATCGCCGTGGTAGCTGGAAAGGTC
TTTGCGGTGCGTTCCGCGTCCTTGCCGAATGTCATCCGGGCCATTGGTCG
ACTCTTGCAATTCTGCGACCCCCACACCAGCAAACTGTGGGAAGAATTCA
GGTGCTCTGGTATGCTGGAAGAGCTACTTACACGCATGAGGGTAGTGGTG
GAAAAGGGACGGTACCTCTTAGCCACTGATATACTCGGGGCTTTTTTACC
TTTGCTTTACGTAGGGGATGGTTTGAGCTGTGACGGCGACAAGACGGACG
ATTGCGGCGCTGACTTCCTCGAGCGGCTCGCATTAAACTGCAGTTTCCAC
ACACAAGCCCTATTCTGTTGGGACGCTAGAGAGCACCTCTTCGTTCGCGG
CCTTGGGTGGCGGGGGGAGGAAGTTTCAGCAGTGCATTTTGGCCGTGCAT
GCCTTGATTTCCCTCCTTGTCCCTCTCGATCTGCTCGACTCTGCCCTAGT
CAATCAGTCTTCTCTGCGTGAAGGAGGGAGAGAAGGGAGAAACAGGAGTT
GAAGGGCGGGGAATGGAGACTTTTCCGGTGGTTGGGCAGCTGGAGACAGG
GTTTGATGGCCTTC
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Coding sequence (CDS) from alignment at scaffold_44:130276..131289+

>mRNA_9573 ID=mRNA_9573|Name=jgi.p|Nanoce1779_2|313034|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_44:130276..131289+ (Nannochloropsis oceanica)
ATGGCTGAGGTCCTCGAGGCAGCCACCACAGACCTGACGTTCCTTCTAGC
CCCAGCCCCGAAAGGTCTCGGTCTAGATTTGGAAGACCGCTCCCTTACAG
ACACCATTGAACGCAATCCCGAGTCCCTCACGAAGGACATAGTCGCAGAT
CTTACCAAGCATCCCCTCATCGCCGTGGTAGCTGGAAAGGTCTTTGCGGT
GCGTTCCGCGTCCTTGCCGAATGTCATCCGGGCCATTGGTCGACTCTTGC
AATTCTGCGACCCCCACACCAGCAAACTGTGGGAAGAATTCAGGTGCTCT
GGTATGCTGGAAGAGCTACTTACACGCATGAGGGTAGTGGTGGAAAAGGG
ACGGTACCTCTTAGCCACTGATATACTCGGGGCTTTTTTACCTTTGCTTT
ACGTAGGGGATGGTTTGAGCTGTGACGGCGACAAGACGGACGATTGCGGC
GCTGACTTCCTCGAGCGGCTCGCATTAAACTGCAGTTTCCACACACAAGC
CCTATTCTGTTGGGACGCTAGAGAGCACCTCTTCGTTCGCGGCCTTGGGT
GGCGGGGGGAGGAAGTTTCAGCAGTGCATTTTGGCCGTGCATGCCTTGAT
TTCCCTCCTTGTCCCTCTCGATCTGCTCGACTCTGCCCTAGTCAATCAGT
CTTCTCTGCGTGA
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Synonyms
Publications