jgi.p|Nanoce1779_2|633822, mRNA_9572 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633822
Unique Name	mRNA_9572
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1771
Alignment location	scaffold_44:127721..130021 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	633908
Track	FilteredModels2
ProteinId	633822

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:127721..130021 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633822	gene_9572	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633822	mRNA_9572-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9572	CDS_9572	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:127721..130021+
coding sequence from alignment at scaffold_44:127721..130021+

mRNA sequence

>mRNA_9572 ID=mRNA_9572|Name=jgi.p|Nanoce1779_2|633822|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp
GGGCGGCGAGGGATTGGGCAGAGATTGGGGTGTTTTTATTTGGGAGGAGA
GGGGCGGAAGTGGTAGGGGAGGGAGAGAAAGAGGGAGGGGGGGAGGTGTA
GGCTTGTTAATTACGAAAGAGATCGGTAACTGGTATCAAAACTGACCAAC
AAGGGCTTGACCCCGAAGAAAACTGAAGAGAAAGCAATGAAGATGTATTT
AAGGAAAGTCATGAACGTGGTTCCTAGAGTCGGTTGTGACTGACTGCTAC
CATTATTATTGGGACCGGTTTGTGCGTGTTTGTCCGTGTACCCTGCCCTT
CTTCACCCACTGCATGTTGCATTGGCGGCCATTGGCGCAGAACAACGAAT
ATTGAATGCACCATCAACGACATCACTTCAATGCGATTAGCCTCCGTAGG
CACGTCAACACAAGTGATCTGCCCCATTCCTTCAACTGTCCATGCCCCTT
GCACGCTGTCATTCTGGCATGCACTATTTTCCTCAAGGCAGCCATGCATA
GATGCATCCCCATGCATAGATGCATCCCCTCTCCTTAGAGACCTTCCACC
CAACCGCCATGATAGGGGCTGATATCCCACCACCAACCTTACCATCGAAC
CACACCTCACTTTTCCCCGGCAGTCATGCCTAAGGTCACCGCTGCGAGTC
AACGGCGGGCTCGCGCCCGGGCATCGAGTCAGCCTTACACCAAGCAACCT
CCTGTCCCCGCTGCCATTACCGTCCTTCCCGACCCCAACCGCCCTGATTT
GGCCGGGACTGGCTTGCAAAAGCCCGCGCACCGACAAAAACTCATGCGTA
AAAAAGCATTTTTAGAGAGTATTGGAGAATCAGCGGCGGCTGCGGCGGTA
GACGTGGGGGCTCGGAGTCAAAAAGCAGCTTGCAAGGGGAGCAAGCACGG
GGAGGAAAGTTTGACACCGAGCTGGAGCGATGTGCGCGGCCTGCTGGTCT
CGCTAAAGTCCCCGTCGATAGCGTTGGAAGGAGAAAAAGCCGCAAAAGCG
ATGACAAGCGAGAACTTTCAAAAGATCAAGTCTAACGCGGCGAAGCAAAT
AATTGCCGCTAAGGAGGTGGAATGTCTAAAGCATATTACCGCCCATCCTG
TTTTCAAGTCTAATCCTCACACTGCTATCCGGGAACACCTTCGCAGCCAG
CTGGCTGCCTCTGCTGCTGCTGCCCGTGCAGTGGCCAAAGAGAAAGGAGA
AGGCGGAGAAGGTGAAGAAGGAAGGAGACATGGGAGTCTGTCGCTCAAGA
AACGAGAGGAAGGAGGAGATGGAGGAAGAAGGCTTAGTCGGTACGTCAAT
TCAGTTGAATGTCATATGTTGGAATATGGGACGAGAGTGCTGGTGGGAGT
AAAGGGAGTGGGAATGCCACTAGTTAATTGACAGACTGACGTTCACCTTC
CTTTGTGAAACGCACACAGGCAAGCCATTCCCCCGGCAAGACGGCATAAA
CGATAATTATTTGATGTTTGAAATAGACCAAAGTATGAAAGGAAAGAAGA
AGAAGCCGCGCAAATATGTATCCGACGACAGACCATAAGTATGGCTATAT
GCTTTTGTTCCATGTGTGGGGGGTGCACATGATGGGGACTAGCGTCCCTC
GTTTCCATCGTACCAAGCTTACCAAAAACCACAATCACCTTGATAACGGC
CCAATCAATAATTTTGACCCACAAATTCTTTTGCATTGTCTACATGCACG
CCATTCCAAGACTTTTCAAAGGCATTACCTCCGACCTCTCCTCCCTCCCC
GCACCCCGCACAATCGCCAAC

protein sequence of jgi.p|Nanoce1779_2|633822

>mRNA_9572-protein ID=mRNA_9572-protein|Name=jgi.p|Nanoce1779_2|633822|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MPKVTAASQRRARARASSQPYTKQPPVPAAITVLPDPNRPDLAGTGLQKP
AHRQKLMRKKAFLESIGESAAAAAVDVGARSQKAACKGSKHGEESLTPSW
SDVRGLLVSLKSPSIALEGEKAAKAMTSENFQKIKSNAAKQIIAAKEVEC
LKHITAHPVFKSNPHTAIREHLRSQLAASAAAARAVAKEKGEGGEGEEGR
RHGSLSLKKREEGGDGGRRLSRYVNSVECHMLEYGTRVLVGVKGVGMPLV
N*

mRNA from alignment at scaffold_44:127721..130021+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9572 ID=mRNA_9572|Name=jgi.p|Nanoce1779_2|633822|organism=Nannochloropsis oceanica|type=mRNA|length=2301bp|location=Sequence derived from alignment at scaffold_44:127721..130021+ (Nannochloropsis oceanica)
GGGCGGCGAGGGATTGGGCAGAGATTGGGGTGTTTTTATTTGGGAGGAGA
GGGGCGGAAGTGGTAGGGGAGGGAGAGAAAGAGGGAGGGGGGGAGGTGTA
GGCTTGTTAATTACGAAAGAGATCGGTAACTGGTATCAAAACTGACCAAC
AAGGGCTTGACCCCGAAGAAAACTGAAGAGAAAGCAATGAAGATGTATTT
AAGGAAAGTCATGAACGTGGTTCCTAGAGTCGGTTGTGACTGACTGCTAC
CATTATTATTGGGACCGGTTTGTGCGTGTTTGTCCGTGTACCCTGCCCTT
CTTCACCCACTGCATGTTGCATTGGCGGCCATTGGCGCAGAACAACGAAT
ATTGAATGCACCATCAACGACATCACTTCAATGCGATTAGCCTCCGTAGG
CACGTCAACACAAGTGATCTGCCCCATTCCTTCAACTGTCCATGCCCCTT
GCACGCTGTCATTCTGGCATGCACTATTTTCCTCAAGGCAGCCATGCATA
GATGCATCCCCATGCATAGATGCATCCCCTCTCCTTAGAGACCTTCCACC
CAACCGCCATGATAGGGGCTGATATCCCACCACCAACCTTACCATCGAAC
CACACCTCACTTTTCCCCGGCAGTCATGCCTAAGGTCACCGCTGCGAGTC
AACGGCGGGCTCGCGCCCGGGCATCGAGTCAGCCTTACACCAAGCAACCT
CCTGTCCCCGCTGCCATTACCGTCCTTCCCGACCCCAACCGCCCTGATTT
GGCCGGGACTGGCTTGCAAAAGCCCGCGCACCGACAAAAACTCATGCGTA
AAAAAGCATTTTTAGAGAGTATTGGAGAATCAGCGGCGGCTGCGGCGGTA
GACGTGGGGGCTCGGAGTCAAAAAGCAGCTTGCAAGGGGAGCAAGCACGG
GGAGGAAAGTTTGACACCGAGCTGGAGCGATGTGCGCGGCCTGCTGGTCT
CGCTAAAGTCCCCGTCGATAGCGTTGGAAGGAGAAAAAGTATGTGAATGT
TCAATCTGTGGAGGGAGGAGTTTATTCATGGTGCGAAAAGGGGGAGGATA
CATCCACTGAGGTGGTAGGCCTCATAACTTACATGGGGTTGTTGGCTGAT
GCCGTTTGCGCATATTCCCCTCATCAATTCATGTTTTCCCAAATTATCAT
GTATAACTACGTAGGCCGCAAAAGCGATGACAAGCGAGAACTTTCAAAAG
ATCAAGTCTAACGCGGCGAAGCAAATAATTGCCGCTAAGGAGGTGCGTTT
TCGTCGTGGGTTAGGGGAATGGGGGGCGATAAAGAAGGGCGCGTTGTAAA
GAACTTCGATGAACCGAACTTCGTGGCTGCTTACATTTACTAGTCCCCTG
TATGCTGGATTGTCGATCATCGAGTGCTTCTAACGTTTTTTTCAAATGTT
TAAAGCTGTCACTGAGTTCGGTCTAATGATCCGCTAGCCAATGACGTGTT
GAACAAGAACGAGTCACCTACATGCATTCTCACTGACATGTAAGCGGTGA
TTAATGAACCCGCTTTTTAAATTAAAAAAAAACGGAACACCTCTCGCACC
TCCGTTGTTCCTGTCTCCCTGACTTTCTCCTTTTCAACCCCAACAGGTGG
AATGTCTAAAGCATATTACCGCCCATCCTGTTTTCAAGTCTAATCCTCAC
ACTGCTATCCGGGAACACCTTCGCAGCCAGCTGGCTGCCTCTGCTGCTGC
TGCCCGTGCAGTGGCCAAAGAGAAAGGAGAAGGCGGAGAAGGTGAAGAAG
GAAGGAGACATGGGAGTCTGTCGCTCAAGAAACGAGAGGAAGGAGGAGAT
GGAGGAAGAAGGCTTAGTCGGTACGTCAATTCAGTTGAATGTCATATGTT
GGAATATGGGACGAGAGTGCTGGTGGGAGTAAAGGGAGTGGGAATGCCAC
TAGTTAATTGACAGACTGACGTTCACCTTCCTTTGTGAAACGCACACAGG
CAAGCCATTCCCCCGGCAAGACGGCATAAACGATAATTATTTGATGTTTG
AAATAGACCAAAGTATGAAAGGAAAGAAGAAGAAGCCGCGCAAATATGTA
TCCGACGACAGACCATAAGTATGGCTATATGCTTTTGTTCCATGTGTGGG
GGGTGCACATGATGGGGACTAGCGTCCCTCGTTTCCATCGTACCAAGCTT
ACCAAAAACCACAATCACCTTGATAACGGCCCAATCAATAATTTTGACCC
ACAAATTCTTTTGCATTGTCTACATGCACGCCATTCCAAGACTTTTCAAA
GGCATTACCTCCGACCTCTCCTCCCTCCCCGCACCCCGCACAATCGCCAA
C

Coding sequence (CDS) from alignment at scaffold_44:127721..130021+

>mRNA_9572 ID=mRNA_9572|Name=jgi.p|Nanoce1779_2|633822|organism=Nannochloropsis oceanica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_44:127721..130021+ (Nannochloropsis oceanica)
ATGCCTAAGGTCACCGCTGCGAGTCAACGGCGGGCTCGCGCCCGGGCATC
GAGTCAGCCTTACACCAAGCAACCTCCTGTCCCCGCTGCCATTACCGTCC
TTCCCGACCCCAACCGCCCTGATTTGGCCGGGACTGGCTTGCAAAAGCCC
GCGCACCGACAAAAACTCATGCGTAAAAAAGCATTTTTAGAGAGTATTGG
AGAATCAGCGGCGGCTGCGGCGGTAGACGTGGGGGCTCGGAGTCAAAAAG
CAGCTTGCAAGGGGAGCAAGCACGGGGAGGAAAGTTTGACACCGAGCTGG
AGCGATGTGCGCGGCCTGCTGGTCTCGCTAAAGTCCCCGTCGATAGCGTT
GGAAGGAGAAAAAGCCGCAAAAGCGATGACAAGCGAGAACTTTCAAAAGA
TCAAGTCTAACGCGGCGAAGCAAATAATTGCCGCTAAGGAGGTGGAATGT
CTAAAGCATATTACCGCCCATCCTGTTTTCAAGTCTAATCCTCACACTGC
TATCCGGGAACACCTTCGCAGCCAGCTGGCTGCCTCTGCTGCTGCTGCCC
GTGCAGTGGCCAAAGAGAAAGGAGAAGGCGGAGAAGGTGAAGAAGGAAGG
AGACATGGGAGTCTGTCGCTCAAGAAACGAGAGGAAGGAGGAGATGGAGG
AAGAAGGCTTAGTCGGTACGTCAATTCAGTTGAATGTCATATGTTGGAAT
ATGGGACGAGAGTGCTGGTGGGAGTAAAGGGAGTGGGAATGCCACTAGTT
AATTGAATGCCTAAGGTCACCGCTGCGAGTCAACGGCGGGCTCGCGCCCG
GGCATCGAGTCAGCCTTACACCAAGCAACCTCCTGTCCCCGCTGCCATTA
CCGTCCTTCCCGACCCCAACCGCCCTGATTTGGCCGGGACTGGCTTGCAA
AAGCCCGCGCACCGACAAAAACTCATGCGTAAAAAAGCATTTTTAGAGAG
TATTGGAGAATCAGCGGCGGCTGCGGCGGTAGACGTGGGGGCTCGGAGTC
AAAAAGCAGCTTGCAAGGGGAGCAAGCACGGGGAGGAAAGTTTGACACCG
AGCTGGAGCGATGTGCGCGGCCTGCTGGTCTCGCTAAAGTCCCCGTCGAT
AGCGTTGGAAGGAGAAAAAGCCGCAAAAGCGATGACAAGCGAGAACTTTC
AAAAGATCAAGTCTAACGCGGCGAAGCAAATAATTGCCGCTAAGGAGGTG
GAATGTCTAAAGCATATTACCGCCCATCCTGTTTTCAAGTCTAATCCTCA
CACTGCTATCCGGGAACACCTTCGCAGCCAGCTGGCTGCCTCTGCTGCTG
CTGCCCGTGCAGTGGCCAAAGAGAAAGGAGAAGGCGGAGAAGGTGAAGAA
GGAAGGAGACATGGGAGTCTGTCGCTCAAGAAACGAGAGGAAGGAGGAGA
TGGAGGAAGAAGGCTTAGTCGGTACGTCAATTCAGTTGAATGTCATATGT
TGGAATATGGGACGAGAGTGCTGGTGGGAGTAAAGGGAGTGGGAATGCCA
CTAGTTAATTGAATGCCTAAGGTCACCGCTGCGAGTCAACGGCGGGCTCG
CGCCCGGGCATCGAGTCAGCCTTACACCAAGCAACCTCCTGTCCCCGCTG
CCATTACCGTCCTTCCCGACCCCAACCGCCCTGATTTGGCCGGGACTGGC
TTGCAAAAGCCCGCGCACCGACAAAAACTCATGCGTAAAAAAGCATTTTT
AGAGAGTATTGGAGAATCAGCGGCGGCTGCGGCGGTAGACGTGGGGGCTC
GGAGTCAAAAAGCAGCTTGCAAGGGGAGCAAGCACGGGGAGGAAAGTTTG
ACACCGAGCTGGAGCGATGTGCGCGGCCTGCTGGTCTCGCTAAAGTCCCC
GTCGATAGCGTTGGAAGGAGAAAAAGCCGCAAAAGCGATGACAAGCGAGA
ACTTTCAAAAGATCAAGTCTAACGCGGCGAAGCAAATAATTGCCGCTAAG
GAGGTGGAATGTCTAAAGCATATTACCGCCCATCCTGTTTTCAAGTCTAA
TCCTCACACTGCTATCCGGGAACACCTTCGCAGCCAGCTGGCTGCCTCTG
CTGCTGCTGCCCGTGCAGTGGCCAAAGAGAAAGGAGAAGGCGGAGAAGGT
GAAGAAGGAAGGAGACATGGGAGTCTGTCGCTCAAGAAACGAGAGGAAGG
AGGAGATGGAGGAAGAAGGCTTAGTCGGTACGTCAATTCAGTTGAATGTC
ATATGTTGGAATATGGGACGAGAGTGCTGGTGGGAGTAAAGGGAGTGGGA
ATGCCACTAGTTAATTGA

Synonyms

Publications