jgi.p|Nanoce1779_2|609192, mRNA_9570 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609192
Unique NamemRNA_9570
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1404
Alignment locationscaffold_44:123159..124783 -

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Properties
Property NameValue
TranscriptId609278
TrackFilteredModels2
ProteinId609192
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:123159..124783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609192gene_9570Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609192mRNA_9570-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9570CDS_9570Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9570 ID=mRNA_9570|Name=jgi.p|Nanoce1779_2|609192|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
ACAGACACCGCTTCTATCTCCATTTAATCTTCACAATGGCCCGCACGTCC
ACCCTCTTTGTCGCCGCCGTCGTCGCCCTCATGGCCCTGGTGAGTGCTTC
CTTTCTGCCCTCCCACCCCTCGACCCAGACATACAGCGAGTGTGCCAAAC
AGGCATGGTGGACACCACGCTTTTCGATGTGATTTGTAAGAGGAAGCCGA
TTTTGCAGGAGTATGAGAAGAAGAGAAGAGAGAAGAGGGATGCGGGCAAC
CGCGGAAAATCTCTTCACAGAATGGTTCCCTGTCTTCATCAACCACCTTC
GATGACTTTTTCCTCTTGCCTGCACCATTCGGGAGGGCTTTGTACGGCGC
TTCTTCGATTCTACTCCCTCGCCTTGGCCTTCTTTCTCACCCCTCTTCCC
TTCTTTGCTCTTTCGCCATCAATCACACCCATATAGAGCGCTAGCGCTTT
CATCCCCGCCGCCAAGGTGGTGCAGCCCGCTGCTGTCACTGTCGGCCGCA
AGGCCGCCACCAGCATGAAGCTTGACGTGCCCGCGGTGGTTGCCGGCCTG
GCCCCTGCTGCTTTCCTGACCGCCCCTGCTTTCGCCGCTGGTATGGATAA
GTGGGGGAGGGGTGGGTGAGGATGGGATCGAAAGAGAGCGAACACATTAC
TGAAATGGAAAAAGCGTCACAAGTTGAAAGGACCTGCAACTCGTTCCACC
GGTACTCACACATATATTGTCCTCTTTCCCTTGAAACTCACATTCTGTTT
CCATCATACAGACCAGATCATGACCGCTCTGCCCTCCACCCTCGTCTCGC
TGGAAGTGACCTTCGCCGCCTACCTGGCTGTACTCCTCGGCACTTTTGTC
CCCGTTGCCTTTCTCATCATTCTTTACATCCAATCGGAGTCCCGCAAGGC
TGGTGAGGCCGCTGGGCGAGGAGATTAAAGCAATGCGTTCTGCGAAGGAA
AAATGCAGATGGTTGAGAGGATGGATGGGGAGTTGTCAACCATGAGAGAA
AGGGACACAAGGCTATTTGCAGGCGGGCAAAGGCGTGGAGGCAGAGCTTT
GCGAAGGTGATGGTGTCATAGCAGAAAGTAGTGATGGGATGTGGATTTTT
TTACCGTACGGGTGTCATGAGAGGAGTGGGGGGTAAAGGTGGAGGAGGAG
GAGCAGCAGTGATGAAAGGCAGGGTAGTTTAGAGAGCAAGATGTCCGTCT
TCCGTATTTTTTTTCCGTCTGTCATGATGCGTCCTTGACGTACGATAGTG
ATGAAATGGGAGGGGGAAATGAAAGGGGGCGTGCTTGCTTTACACGGGTG
CCGTCTGAGTCTGGAGAAAAAGAAAACTGCAGGAGGATAGGACGGGGGAG
GGGAAGAGGGTAGGAGAACCAATTAAAGAGAAAAAACAAAACTCATACTA
ACAA
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protein sequence of jgi.p|Nanoce1779_2|609192

>mRNA_9570-protein ID=mRNA_9570-protein|Name=jgi.p|Nanoce1779_2|609192|organism=Nannochloropsis oceanica|type=polypeptide|length=53bp
MTALPSTLVSLEVTFAAYLAVLLGTFVPVAFLIILYIQSESRKAGEAAGR
GD*
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mRNA from alignment at scaffold_44:123159..124783-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9570 ID=mRNA_9570|Name=jgi.p|Nanoce1779_2|609192|organism=Nannochloropsis oceanica|type=mRNA|length=1625bp|location=Sequence derived from alignment at scaffold_44:123159..124783- (Nannochloropsis oceanica)
ACAGACACCGCTTCTATCTCCATTTAATCTTCACAATGGCCCGCACGTCC
ACCCTCTTTGTCGCCGCCGTCGTCGCCCTCATGGCCCTGGTGAGTGCTTC
CTTTCTGCCCTCCCACCCCTCGACCCAGACATACAGCGAGTGTGCCAAAC
AGGCATGGTGGACACCACGCTTTTCGATGTGATTTGTAAGAGGAAGCCGA
TTTTGCAGGAGTATGAGAAGAAGAGAAGAGAGAAGAGGGATGCGGGCAAC
CGCGGAAAATCTCTTCACAGAATGGTTCCCTGTCTTCATCAACCACCTTC
GATGACTTTTTCCTCTTGCCTGCACCATTCGGGAGGGCTTTGTACGGCGC
TTCTTCGATTCTACTCCCTCGCCTTGGCCTTCTTTCTCACCCCTCTTCCC
TTCTTTGCTCTTTCGCCATCAATCACACCCATATAGAGCGCTAGCGCTTT
CATCCCCGCCGCCAAGGTGGTGCAGCCCGCTGCTGTCACTGTCGGCCGCA
AGGCCGCCACCAGCATGAAGCTTGACGTGCCCGCGGTGGTTGCCGGCCTG
GCCCCTGCTGCTTTCCTGACCGCCCCTGCTTTCGCCGCTGGTATGGATAA
GTGGGGGAGGGGTGGGTGAGGATGGGATCGAAAGAGAGCGAACACATTAC
TGAAATGGAAAAAGCGTCACAAGTTGAAAGGACCTGCAACTCGTTCCACC
GGTACTCACACATATATTGTCCTCTTTCCCTTGAAACTCACATTCTGTTT
CCATCATACAGACCAGATCATGACCGCTCTGCCCTCCACCCTCGTCTCGC
TGGAAGTAAGTAGAATGCGTCTTCACCGTCCCCTCTCTCCTTTGTTTCTC
TCCCTGTCTTCGCTTTCTGCCGTCTCCTGTACTTCTGTTCTTCTCGAAGT
GATTTGTTGTCGATTGGCGAACTTTCCCTCCCTCTTTCTCCCTTCTCAGC
GTCATCGTGCGTCATCGTGCCTCTTTTTTTCTCACCTGCTTCCCTTTCCT
TCCTCCATCCCTTCCTCCCCCACAAGGTGACCTTCGCCGCCTACCTGGCT
GTACTCCTCGGCACTTTTGTCCCCGTTGCCTTTCTCATCATTCTTTACAT
CCAATCGGAGTCCCGCAAGGCTGGTGAGGCCGCTGGGCGAGGAGATTAAA
GCAATGCGTTCTGCGAAGGAAAAATGCAGATGGTTGAGAGGATGGATGGG
GAGTTGTCAACCATGAGAGAAAGGGACACAAGGCTATTTGCAGGCGGGCA
AAGGCGTGGAGGCAGAGCTTTGCGAAGGTGATGGTGTCATAGCAGAAAGT
AGTGATGGGATGTGGATTTTTTTACCGTACGGGTGTCATGAGAGGAGTGG
GGGGTAAAGGTGGAGGAGGAGGAGCAGCAGTGATGAAAGGCAGGGTAGTT
TAGAGAGCAAGATGTCCGTCTTCCGTATTTTTTTTCCGTCTGTCATGATG
CGTCCTTGACGTACGATAGTGATGAAATGGGAGGGGGAAATGAAAGGGGG
CGTGCTTGCTTTACACGGGTGCCGTCTGAGTCTGGAGAAAAAGAAAACTG
CAGGAGGATAGGACGGGGGAGGGGAAGAGGGTAGGAGAACCAATTAAAGA
GAAAAAACAAAACTCATACTAACAA
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Coding sequence (CDS) from alignment at scaffold_44:123159..124783-

>mRNA_9570 ID=mRNA_9570|Name=jgi.p|Nanoce1779_2|609192|organism=Nannochloropsis oceanica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_44:123159..124783- (Nannochloropsis oceanica)
GTGACCTTCGCCGCCTACCTGGCTGTACTCCTCGGCACTTTTGTCCCCGT
TGCCTTTCTCATCATTCTTTACATCCAATCGGAGTCCCGCAAGGCTGGTG
AGGCCGCTGGGCGAGGAGATTAAATGACCGCTCTGCCCTCCACCCTCGTC
TCGCTGGAAGTGACCTTCGCCGCCTACCTGGCTGTACTCCTCGGCACTTT
TGTCCCCGTTGCCTTTCTCATCATTCTTTACATCCAATCGGAGTCCCGCA
AGGCTGGTGAGGCCGCTGGGCGAGGAGATTAAATGACCGCTCTGCCCTCC
ACCCTCGTCTCGCTGGAA
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Synonyms
Publications