jgi.p|Nanoce1779_2|574799, mRNA_957 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574799
Unique Name	mRNA_957
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3201
Alignment location	scaffold_2:852790..855990 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574885
Track	FilteredModels2
ProteinId	574799

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:852790..855990 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574799	gene_957	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574799	mRNA_957-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_957	CDS_957	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:852790..855990+
coding sequence from alignment at scaffold_2:852790..855990+

mRNA sequence

>mRNA_957 ID=mRNA_957|Name=jgi.p|Nanoce1779_2|574799|organism=Nannochloropsis oceanica|type=mRNA|length=3201bp
GGGGGATTGGGGGAAGGGTGTTGAACCAAATGTGGTGACATATTCGAGCT
TGATGAATGCGTATGCAATGTGCGGGCAGGTTGAGGGAGCGGAGGCGGTT
TTGGAACGCATGCAAGTGCAGGGTGTACAGCCGAACCTGATCACATTTAA
CTCGCTCGCGACTGCTTATGCACGCGATGGAAATATAGCGGGGGCGGCGG
ACGTGCTGCGGCGGATGCAGACAGACGCGCATGTGATGCCGAATACTGTA
TCATATAATGCAGTCTTGAGTGCTCATGCGCAATTAGGCTCGTGGAAGGG
GGCGGAAGAGGTGATCCAACACATGAGCAAGAGCAACGTGCAGCCCAACG
CCGCGAGTTTCAATACATTGATTGATGCCTATGCAGCTAAGGGTAACGTG
GAGGGCGCTGAAAATGTTTTGCAGCGTATGAATAATCTAACGGAGGTGGA
GCCGAATGTGATTTCCTTCTCCTCTGTAATCAACGCTTATTCCATGAGGG
GCGATTGGCGCGGGGCGGAAAATTTGCTGAGGCGGATGCAGTACCAGGGT
GTGCAACCTAATCTCGTAACATACAACTCTTTGATGACAGCTTACTCGAA
AGACGGCAATTACAACGGCGCGGAGGACGTATTGCGGCGCATGCACGCTG
ACCCACACGTCGAACCCACGACGACAACGTATAATTTGCTCATCAACAGC
TATGCTCAGAAGGGAGCTTGGAGGGGTGCGGAAGAGGTGCTCCAGCGTAT
GTTGTCCACCTCAATAACAGGAGGAGGGAGTTTGATTGTGCCGACGATAA
TGACTTACAATAGCTTGATAAATGCACATGCCAAGGACGGAAACTACAAT
GGGGCCCTTTCTGTGTTGGCGCGGCTATTGGAGCGAGGCGTAGAGCCCAC
CGTTACCACATTCAATTCGATTATCAAAGCTTTCAGTAAGGAGGGGCACG
CAGAGGGCGCGGAAGGTGTGCTGGCACGGATGATGCATGAATTTGGGCTG
GCAGCGAATGTTACGACGTGGTCGAGCGTGGTGAATGCTTATGCGACTAG
AGGGGATTTCGCTGGGGCAGAGGACGTTTTGGTGCGTATGCAGGAGTATG
GGGTTGAGCCGAACGTGACTACCTTGTCGAGTGTGATTAATGCTTATGCA
AATAAGGGCTCGTGGGCGGGGGCGGAGAGTGTTTTGCGCCGTTTGGAGGC
CAAAGGCCTGGAGTGCGATGTGATCACGATCAATAGTATGCTCAAGGTGT
ATGCAAATGCTCGAGACGTGGACGGCTGTGGGCGGGGCCTGGACCTGGTG
CGGCGCTTGCTCGATTCTAGCCGACATAAACCCACGCACGTAACGTTCAA
GACGCTTTTTACTCTTCTCCTTAAGCATCCGGATGAAACAAAACTTCATG
CGGCACTAGCATTGTTGAATGAGCATTTACACGTGCGTTCCCGTACTTCA
TCCATATACGCGCCGCTGATTGAACTGTGCGGGGCAACGGGGCAGGTGGA
TCTGGCAATGCGCTACTTGGAAGAAGCCCGCCGAGGGGGGCATGTTGATA
AGTGTGTTTTGCGGGCGGCGCGGGCGGCCGGATTGAATACGGGGGGCGGT
GGAGCTGGTTATGGTGGTGGGGACGATCATTTTCCTGGAAGGCGGGGGCG
AGGTCAGGGCCACCATCATCACCATCAGCATTACGCCGCACCGGCACCAG
TGGGGGTTGTGCCTTTGATGCGGCGGTAGAGATAGAGTAGGCATGTTGCC
TTAATTGGATGCTTCACGATCAAGTTGCCAAGTGGCATTCATGATAAATA
TACTGTGCGCGGAATCGTATTTTTTCCATTCTATTTAGATATTTATACAT
CGAGATCATGACAGTTGCTCAAAAGTGACAGTAGGCAGCTAACCACGTTT
TTGAATTACGCGCACGAGGATGGTGGGGCTGACAGGGGAGGATAGCTAAT
GATGCCCAATTGTCTACAGTGTGGTAGAAGTAAGCTGATGGAATCTGGAG
TATATAAATTAAGTACGTAGACTATGTTATTCTTTTTCTGACCTAGCCTT
TCGTAAGGCCGAGGATCACGTGACGAGAAAAAAGTCATAAGAGATAGAAG
TCAAGCAACATTCAGGAAGTAGGGATAATAATGAGAGAGAAAAAAAGAGG
AAATAAATGACAGAGGGCGTATCTGTGCATGTGTGGTGAATGTCCGAGAC
AGCAAATGGAGAAGTAGATGAATCTAGGAAGGGCAAGTTGAGAGAATCGC
ACAAAAAGACGTCTTGGGCAAGCCACCAGAAGGAGTTTGTAAAGGGTTTT
AGGGCTCCTAGCAGCAGCAGAAGAATGAAGGGCTTGCATTGAGTGAGCAA
AGACAATCACACGCGACGTGTGGGAGATTCTAAGGCGAACGACTAGACCA
ATTGTCAATGAACACAGAAACCTCGCGCTTCGCACAAGCGAACAGCAAAA
GAGTAAGCATTTGTTTCATGTAGAAAAGAAGAGGGGAAAGAAGAGAATTA
AAGAATGAGGGAACATGGGAGCAGCCGGAGAAAAAAGTGTCGCCCGCTTT
CAGATATCAGAAAGAGAGAAAAGATAACTATAGGAGCAAAAATACGAAAA
AAAGAGCGACAGGAGGGGTAGGAGGGAGCAGTCTGGTAAAGAGGCTTATC
CTCTTTGGGAGAAAATGAGGGAAAGTTTACCAAATACAAATAGGAGAATA
GCAAAAATACTTAGACGACAAGCAAACCCTAGTTTAGGTTATAGCCCTTA
CCCAGTGGTAGCTGCGAGCACAATTTGTGTGTGTTTAGGAATAAGGCGCT
CTTCACCAAAATACCGAAAGAGCGCGGCTGTCGCAATCTCAGCATATTGT
CCGCATTCCGTGCGCCTATGTACGAGGCAGAGGTATACGGTAGAAATGGG
TTGAGAACAACAGCATAACAAAAACTGATGAAAGGCGGCCCATTTTGAAT
CAGGCAGATCATAGCAAAAAACATGTCAGACAGAGAAGTCGGGTCGTCTC
AGGTCTTTTGCGATTTCAAAAACACAGACCCATCGATCAACATTTGAACT
TAGACACCTTTCATGCCTGTGTGATTTAGATTACGATATGACAAGAAGCA
CACAATTAAGTGATGACAAAACAAAACACCAAAAACTGACACGAATAAAC
GAAAGAGGAGAGAAAAATGAGGAAAGAAGCAAACAAGAAGGGAATAAGAA
A

protein sequence of jgi.p|Nanoce1779_2|574799

>mRNA_957-protein ID=mRNA_957-protein|Name=jgi.p|Nanoce1779_2|574799|organism=Nannochloropsis oceanica|type=polypeptide|length=559bp
MNAYAMCGQVEGAEAVLERMQVQGVQPNLITFNSLATAYARDGNIAGAAD
VLRRMQTDAHVMPNTVSYNAVLSAHAQLGSWKGAEEVIQHMSKSNVQPNA
ASFNTLIDAYAAKGNVEGAENVLQRMNNLTEVEPNVISFSSVINAYSMRG
DWRGAENLLRRMQYQGVQPNLVTYNSLMTAYSKDGNYNGAEDVLRRMHAD
PHVEPTTTTYNLLINSYAQKGAWRGAEEVLQRMLSTSITGGGSLIVPTIM
TYNSLINAHAKDGNYNGALSVLARLLERGVEPTVTTFNSIIKAFSKEGHA
EGAEGVLARMMHEFGLAANVTTWSSVVNAYATRGDFAGAEDVLVRMQEYG
VEPNVTTLSSVINAYANKGSWAGAESVLRRLEAKGLECDVITINSMLKVY
ANARDVDGCGRGLDLVRRLLDSSRHKPTHVTFKTLFTLLLKHPDETKLHA
ALALLNEHLHVRSRTSSIYAPLIELCGATGQVDLAMRYLEEARRGGHVDK
CVLRAARAAGLNTGGGGAGYGGGDDHFPGRRGRGQGHHHHHQHYAAPAPV
GVVPLMRR*

mRNA from alignment at scaffold_2:852790..855990+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_957 ID=mRNA_957|Name=jgi.p|Nanoce1779_2|574799|organism=Nannochloropsis oceanica|type=mRNA|length=3201bp|location=Sequence derived from alignment at scaffold_2:852790..855990+ (Nannochloropsis oceanica)
GGGGGATTGGGGGAAGGGTGTTGAACCAAATGTGGTGACATATTCGAGCT
TGATGAATGCGTATGCAATGTGCGGGCAGGTTGAGGGAGCGGAGGCGGTT
TTGGAACGCATGCAAGTGCAGGGTGTACAGCCGAACCTGATCACATTTAA
CTCGCTCGCGACTGCTTATGCACGCGATGGAAATATAGCGGGGGCGGCGG
ACGTGCTGCGGCGGATGCAGACAGACGCGCATGTGATGCCGAATACTGTA
TCATATAATGCAGTCTTGAGTGCTCATGCGCAATTAGGCTCGTGGAAGGG
GGCGGAAGAGGTGATCCAACACATGAGCAAGAGCAACGTGCAGCCCAACG
CCGCGAGTTTCAATACATTGATTGATGCCTATGCAGCTAAGGGTAACGTG
GAGGGCGCTGAAAATGTTTTGCAGCGTATGAATAATCTAACGGAGGTGGA
GCCGAATGTGATTTCCTTCTCCTCTGTAATCAACGCTTATTCCATGAGGG
GCGATTGGCGCGGGGCGGAAAATTTGCTGAGGCGGATGCAGTACCAGGGT
GTGCAACCTAATCTCGTAACATACAACTCTTTGATGACAGCTTACTCGAA
AGACGGCAATTACAACGGCGCGGAGGACGTATTGCGGCGCATGCACGCTG
ACCCACACGTCGAACCCACGACGACAACGTATAATTTGCTCATCAACAGC
TATGCTCAGAAGGGAGCTTGGAGGGGTGCGGAAGAGGTGCTCCAGCGTAT
GTTGTCCACCTCAATAACAGGAGGAGGGAGTTTGATTGTGCCGACGATAA
TGACTTACAATAGCTTGATAAATGCACATGCCAAGGACGGAAACTACAAT
GGGGCCCTTTCTGTGTTGGCGCGGCTATTGGAGCGAGGCGTAGAGCCCAC
CGTTACCACATTCAATTCGATTATCAAAGCTTTCAGTAAGGAGGGGCACG
CAGAGGGCGCGGAAGGTGTGCTGGCACGGATGATGCATGAATTTGGGCTG
GCAGCGAATGTTACGACGTGGTCGAGCGTGGTGAATGCTTATGCGACTAG
AGGGGATTTCGCTGGGGCAGAGGACGTTTTGGTGCGTATGCAGGAGTATG
GGGTTGAGCCGAACGTGACTACCTTGTCGAGTGTGATTAATGCTTATGCA
AATAAGGGCTCGTGGGCGGGGGCGGAGAGTGTTTTGCGCCGTTTGGAGGC
CAAAGGCCTGGAGTGCGATGTGATCACGATCAATAGTATGCTCAAGGTGT
ATGCAAATGCTCGAGACGTGGACGGCTGTGGGCGGGGCCTGGACCTGGTG
CGGCGCTTGCTCGATTCTAGCCGACATAAACCCACGCACGTAACGTTCAA
GACGCTTTTTACTCTTCTCCTTAAGCATCCGGATGAAACAAAACTTCATG
CGGCACTAGCATTGTTGAATGAGCATTTACACGTGCGTTCCCGTACTTCA
TCCATATACGCGCCGCTGATTGAACTGTGCGGGGCAACGGGGCAGGTGGA
TCTGGCAATGCGCTACTTGGAAGAAGCCCGCCGAGGGGGGCATGTTGATA
AGTGTGTTTTGCGGGCGGCGCGGGCGGCCGGATTGAATACGGGGGGCGGT
GGAGCTGGTTATGGTGGTGGGGACGATCATTTTCCTGGAAGGCGGGGGCG
AGGTCAGGGCCACCATCATCACCATCAGCATTACGCCGCACCGGCACCAG
TGGGGGTTGTGCCTTTGATGCGGCGGTAGAGATAGAGTAGGCATGTTGCC
TTAATTGGATGCTTCACGATCAAGTTGCCAAGTGGCATTCATGATAAATA
TACTGTGCGCGGAATCGTATTTTTTCCATTCTATTTAGATATTTATACAT
CGAGATCATGACAGTTGCTCAAAAGTGACAGTAGGCAGCTAACCACGTTT
TTGAATTACGCGCACGAGGATGGTGGGGCTGACAGGGGAGGATAGCTAAT
GATGCCCAATTGTCTACAGTGTGGTAGAAGTAAGCTGATGGAATCTGGAG
TATATAAATTAAGTACGTAGACTATGTTATTCTTTTTCTGACCTAGCCTT
TCGTAAGGCCGAGGATCACGTGACGAGAAAAAAGTCATAAGAGATAGAAG
TCAAGCAACATTCAGGAAGTAGGGATAATAATGAGAGAGAAAAAAAGAGG
AAATAAATGACAGAGGGCGTATCTGTGCATGTGTGGTGAATGTCCGAGAC
AGCAAATGGAGAAGTAGATGAATCTAGGAAGGGCAAGTTGAGAGAATCGC
ACAAAAAGACGTCTTGGGCAAGCCACCAGAAGGAGTTTGTAAAGGGTTTT
AGGGCTCCTAGCAGCAGCAGAAGAATGAAGGGCTTGCATTGAGTGAGCAA
AGACAATCACACGCGACGTGTGGGAGATTCTAAGGCGAACGACTAGACCA
ATTGTCAATGAACACAGAAACCTCGCGCTTCGCACAAGCGAACAGCAAAA
GAGTAAGCATTTGTTTCATGTAGAAAAGAAGAGGGGAAAGAAGAGAATTA
AAGAATGAGGGAACATGGGAGCAGCCGGAGAAAAAAGTGTCGCCCGCTTT
CAGATATCAGAAAGAGAGAAAAGATAACTATAGGAGCAAAAATACGAAAA
AAAGAGCGACAGGAGGGGTAGGAGGGAGCAGTCTGGTAAAGAGGCTTATC
CTCTTTGGGAGAAAATGAGGGAAAGTTTACCAAATACAAATAGGAGAATA
GCAAAAATACTTAGACGACAAGCAAACCCTAGTTTAGGTTATAGCCCTTA
CCCAGTGGTAGCTGCGAGCACAATTTGTGTGTGTTTAGGAATAAGGCGCT
CTTCACCAAAATACCGAAAGAGCGCGGCTGTCGCAATCTCAGCATATTGT
CCGCATTCCGTGCGCCTATGTACGAGGCAGAGGTATACGGTAGAAATGGG
TTGAGAACAACAGCATAACAAAAACTGATGAAAGGCGGCCCATTTTGAAT
CAGGCAGATCATAGCAAAAAACATGTCAGACAGAGAAGTCGGGTCGTCTC
AGGTCTTTTGCGATTTCAAAAACACAGACCCATCGATCAACATTTGAACT
TAGACACCTTTCATGCCTGTGTGATTTAGATTACGATATGACAAGAAGCA
CACAATTAAGTGATGACAAAACAAAACACCAAAAACTGACACGAATAAAC
GAAAGAGGAGAGAAAAATGAGGAAAGAAGCAAACAAGAAGGGAATAAGAA
A

Coding sequence (CDS) from alignment at scaffold_2:852790..855990+

>mRNA_957 ID=mRNA_957|Name=jgi.p|Nanoce1779_2|574799|organism=Nannochloropsis oceanica|type=CDS|length=1677bp|location=Sequence derived from alignment at scaffold_2:852790..855990+ (Nannochloropsis oceanica)
ATGAATGCGTATGCAATGTGCGGGCAGGTTGAGGGAGCGGAGGCGGTTTT
GGAACGCATGCAAGTGCAGGGTGTACAGCCGAACCTGATCACATTTAACT
CGCTCGCGACTGCTTATGCACGCGATGGAAATATAGCGGGGGCGGCGGAC
GTGCTGCGGCGGATGCAGACAGACGCGCATGTGATGCCGAATACTGTATC
ATATAATGCAGTCTTGAGTGCTCATGCGCAATTAGGCTCGTGGAAGGGGG
CGGAAGAGGTGATCCAACACATGAGCAAGAGCAACGTGCAGCCCAACGCC
GCGAGTTTCAATACATTGATTGATGCCTATGCAGCTAAGGGTAACGTGGA
GGGCGCTGAAAATGTTTTGCAGCGTATGAATAATCTAACGGAGGTGGAGC
CGAATGTGATTTCCTTCTCCTCTGTAATCAACGCTTATTCCATGAGGGGC
GATTGGCGCGGGGCGGAAAATTTGCTGAGGCGGATGCAGTACCAGGGTGT
GCAACCTAATCTCGTAACATACAACTCTTTGATGACAGCTTACTCGAAAG
ACGGCAATTACAACGGCGCGGAGGACGTATTGCGGCGCATGCACGCTGAC
CCACACGTCGAACCCACGACGACAACGTATAATTTGCTCATCAACAGCTA
TGCTCAGAAGGGAGCTTGGAGGGGTGCGGAAGAGGTGCTCCAGCGTATGT
TGTCCACCTCAATAACAGGAGGAGGGAGTTTGATTGTGCCGACGATAATG
ACTTACAATAGCTTGATAAATGCACATGCCAAGGACGGAAACTACAATGG
GGCCCTTTCTGTGTTGGCGCGGCTATTGGAGCGAGGCGTAGAGCCCACCG
TTACCACATTCAATTCGATTATCAAAGCTTTCAGTAAGGAGGGGCACGCA
GAGGGCGCGGAAGGTGTGCTGGCACGGATGATGCATGAATTTGGGCTGGC
AGCGAATGTTACGACGTGGTCGAGCGTGGTGAATGCTTATGCGACTAGAG
GGGATTTCGCTGGGGCAGAGGACGTTTTGGTGCGTATGCAGGAGTATGGG
GTTGAGCCGAACGTGACTACCTTGTCGAGTGTGATTAATGCTTATGCAAA
TAAGGGCTCGTGGGCGGGGGCGGAGAGTGTTTTGCGCCGTTTGGAGGCCA
AAGGCCTGGAGTGCGATGTGATCACGATCAATAGTATGCTCAAGGTGTAT
GCAAATGCTCGAGACGTGGACGGCTGTGGGCGGGGCCTGGACCTGGTGCG
GCGCTTGCTCGATTCTAGCCGACATAAACCCACGCACGTAACGTTCAAGA
CGCTTTTTACTCTTCTCCTTAAGCATCCGGATGAAACAAAACTTCATGCG
GCACTAGCATTGTTGAATGAGCATTTACACGTGCGTTCCCGTACTTCATC
CATATACGCGCCGCTGATTGAACTGTGCGGGGCAACGGGGCAGGTGGATC
TGGCAATGCGCTACTTGGAAGAAGCCCGCCGAGGGGGGCATGTTGATAAG
TGTGTTTTGCGGGCGGCGCGGGCGGCCGGATTGAATACGGGGGGCGGTGG
AGCTGGTTATGGTGGTGGGGACGATCATTTTCCTGGAAGGCGGGGGCGAG
GTCAGGGCCACCATCATCACCATCAGCATTACGCCGCACCGGCACCAGTG
GGGGTTGTGCCTTTGATGCGGCGGTAG

Synonyms

Publications