jgi.p|Nanoce1779_2|609187, mRNA_9568 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609187
Unique NamemRNA_9568
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1224
Alignment locationscaffold_44:115180..116403 -

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Properties
Property NameValue
TranscriptId609273
TrackFilteredModels2
ProteinId609187
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:115180..116403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609187gene_9568Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609187mRNA_9568-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9568CDS_9568Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9568 ID=mRNA_9568|Name=jgi.p|Nanoce1779_2|609187|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp
ACAGACGGGACATTACTCCTGCGCACACTCCATATCTTCCTCATTCCTCG
ACACATCCACAGCTGCAAATAGAGGGGCCTTCGATTGTTGTCGGCGGCGG
TGGCGCGTACTGAACCCGCTCGTCCTCGTTTTTTTCTCCTTTCAACCACT
AGCACTAGCACCAGCACCATCACCACCATCTTTGCCCGCCTTCTCCCACG
ACAAGCTAGCCGCACACTCAGGCGAGAATGATGGCCACCACCACCACCAG
TACCATCCCCTCCGCTTCCTCTAACACAATTACCAGCAGCACGCACCTTC
CCCCTGCAGTCGACCCACACCTGCTGGACCTGCTGGAAACCCTATCTGGA
CCCCACCCCATCCCTTCCAACGCCCCCTTCTGGCGACACGGGCTTCTCCT
TGCACCCGACCTCCGTGAGACCTGCCGCCGAGATGCGGGCGTGCATGCCG
ATAACCCTGTGATGGAACACTTCGCAGCGCGTTTATTGTCCTGTAATCAT
CGATCAGGCAATTTGGGGAGGCTGGTGCAACATACCATACAGAGTGTGGA
GGAGGGAGGGCGGGACGGCGGGAAGGAAGGTGGGATTGAGGTGGAAAGGG
CGATGAATGCCATGAGACTAACGGCAGTTTTTGTAGGCTATTTGCTGGCG
AGAGCGGGTGAGGGTGGAGAAGGAGGAAGGGGCGTCGAGATGGTGCTAGA
GCACATACAGCCATTCTCGTATGTTGAGGAAGGGAGGGAGAGGAGAAGAA
GACGTACTCATGGCTCTTCATCCTCTTCACCCTCCTCTTTCTCGTCTAAT
TCGGTTTCGTCATCGGTGTCGCCGTCGGCGGAAGCAGCAGCAGCAGCAGT
GGCGGAAGGAGGAGAAGGAATTATACGGCTTTCCTCTTCCTCCTCCTCGG
TGTCCTCCCCCCCATCCTCCCCCCCTACCCCCATCATCCCCTCTCTTCTT
CATGCACTGTGCCGCTTTATCCTCTCCGGAAGAGACGCCACCCTTCCGTC
CTCCGTCCCTCCCTCCTCTCTTTCTCCCTCCGCTTACCTGGAAGCAATAA
ATCTTCTCCTTGTACTCTGTTCCAGCCAGCTTTATGGAGCGAGGGACGGG
AGGGAGGGAAGGAGGGAGGGAGGGAAGACTCGCCCCAAGGAACACATTTT
CCTCGATGCGCTCATGGAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCG
TGAGGATGGTAAGGCAATTATTGA
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protein sequence of jgi.p|Nanoce1779_2|609187

>mRNA_9568-protein ID=mRNA_9568-protein|Name=jgi.p|Nanoce1779_2|609187|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MMATTTTSTIPSASSNTITSSTHLPPAVDPHLLDLLETLSGPHPIPSNAP
FWRHGLLLAPDLRETCRRDAGVHADNPVMEHFAARLLSCNHRSGNLGRLV
QHTIQSVEEGGRDGGKEGGIEVERAMNAMRLTAVFVGYLLARAGEGGEGG
RGVEMVLEHIQPFSYVEEGRERRRRRTHGSSSSSPSSFSSNSVSSSVSPS
AEAAAAAVAEGGEGIIRLSSSSSSVSSPPSSPPTPIIPSLLHALCRFILS
GRDATLPSSVPPSSLSPSAYLEAINLLLVLCSSQLYGARDGREGRREGGK
TRPKEHIFLDALMEEGGREGGREGVRMV
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mRNA from alignment at scaffold_44:115180..116403-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9568 ID=mRNA_9568|Name=jgi.p|Nanoce1779_2|609187|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp|location=Sequence derived from alignment at scaffold_44:115180..116403- (Nannochloropsis oceanica)
ACAGACGGGACATTACTCCTGCGCACACTCCATATCTTCCTCATTCCTCG
ACACATCCACAGCTGCAAATAGAGGGGCCTTCGATTGTTGTCGGCGGCGG
TGGCGCGTACTGAACCCGCTCGTCCTCGTTTTTTTCTCCTTTCAACCACT
AGCACTAGCACCAGCACCATCACCACCATCTTTGCCCGCCTTCTCCCACG
ACAAGCTAGCCGCACACTCAGGCGAGAATGATGGCCACCACCACCACCAG
TACCATCCCCTCCGCTTCCTCTAACACAATTACCAGCAGCACGCACCTTC
CCCCTGCAGTCGACCCACACCTGCTGGACCTGCTGGAAACCCTATCTGGA
CCCCACCCCATCCCTTCCAACGCCCCCTTCTGGCGACACGGGCTTCTCCT
TGCACCCGACCTCCGTGAGACCTGCCGCCGAGATGCGGGCGTGCATGCCG
ATAACCCTGTGATGGAACACTTCGCAGCGCGTTTATTGTCCTGTAATCAT
CGATCAGGCAATTTGGGGAGGCTGGTGCAACATACCATACAGAGTGTGGA
GGAGGGAGGGCGGGACGGCGGGAAGGAAGGTGGGATTGAGGTGGAAAGGG
CGATGAATGCCATGAGACTAACGGCAGTTTTTGTAGGCTATTTGCTGGCG
AGAGCGGGTGAGGGTGGAGAAGGAGGAAGGGGCGTCGAGATGGTGCTAGA
GCACATACAGCCATTCTCGTATGTTGAGGAAGGGAGGGAGAGGAGAAGAA
GACGTACTCATGGCTCTTCATCCTCTTCACCCTCCTCTTTCTCGTCTAAT
TCGGTTTCGTCATCGGTGTCGCCGTCGGCGGAAGCAGCAGCAGCAGCAGT
GGCGGAAGGAGGAGAAGGAATTATACGGCTTTCCTCTTCCTCCTCCTCGG
TGTCCTCCCCCCCATCCTCCCCCCCTACCCCCATCATCCCCTCTCTTCTT
CATGCACTGTGCCGCTTTATCCTCTCCGGAAGAGACGCCACCCTTCCGTC
CTCCGTCCCTCCCTCCTCTCTTTCTCCCTCCGCTTACCTGGAAGCAATAA
ATCTTCTCCTTGTACTCTGTTCCAGCCAGCTTTATGGAGCGAGGGACGGG
AGGGAGGGAAGGAGGGAGGGAGGGAAGACTCGCCCCAAGGAACACATTTT
CCTCGATGCGCTCATGGAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCG
TGAGGATGGTAAGGCAATTATTGA
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Coding sequence (CDS) from alignment at scaffold_44:115180..116403-

>mRNA_9568 ID=mRNA_9568|Name=jgi.p|Nanoce1779_2|609187|organism=Nannochloropsis oceanica|type=CDS|length=985bp|location=Sequence derived from alignment at scaffold_44:115180..116403- (Nannochloropsis oceanica)
ATGATGGCCACCACCACCACCAGTACCATCCCCTCCGCTTCCTCTAACAC
AATTACCAGCAGCACGCACCTTCCCCCTGCAGTCGACCCACACCTGCTGG
ACCTGCTGGAAACCCTATCTGGACCCCACCCCATCCCTTCCAACGCCCCC
TTCTGGCGACACGGGCTTCTCCTTGCACCCGACCTCCGTGAGACCTGCCG
CCGAGATGCGGGCGTGCATGCCGATAACCCTGTGATGGAACACTTCGCAG
CGCGTTTATTGTCCTGTAATCATCGATCAGGCAATTTGGGGAGGCTGGTG
CAACATACCATACAGAGTGTGGAGGAGGGAGGGCGGGACGGCGGGAAGGA
AGGTGGGATTGAGGTGGAAAGGGCGATGAATGCCATGAGACTAACGGCAG
TTTTTGTAGGCTATTTGCTGGCGAGAGCGGGTGAGGGTGGAGAAGGAGGA
AGGGGCGTCGAGATGGTGCTAGAGCACATACAGCCATTCTCGTATGTTGA
GGAAGGGAGGGAGAGGAGAAGAAGACGTACTCATGGCTCTTCATCCTCTT
CACCCTCCTCTTTCTCGTCTAATTCGGTTTCGTCATCGGTGTCGCCGTCG
GCGGAAGCAGCAGCAGCAGCAGTGGCGGAAGGAGGAGAAGGAATTATACG
GCTTTCCTCTTCCTCCTCCTCGGTGTCCTCCCCCCCATCCTCCCCCCCTA
CCCCCATCATCCCCTCTCTTCTTCATGCACTGTGCCGCTTTATCCTCTCC
GGAAGAGACGCCACCCTTCCGTCCTCCGTCCCTCCCTCCTCTCTTTCTCC
CTCCGCTTACCTGGAAGCAATAAATCTTCTCCTTGTACTCTGTTCCAGCC
AGCTTTATGGAGCGAGGGACGGGAGGGAGGGAAGGAGGGAGGGAGGGAAG
ACTCGCCCCAAGGAACACATTTTCCTCGATGCGCTCATGGAAGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGCGTGAGGATGGTAA
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Synonyms
Publications