jgi.p|Nanoce1779_2|312763, mRNA_9567 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|312763
Unique NamemRNA_9567
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1851
Alignment locationscaffold_44:112046..113953 -

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Properties
Property NameValue
TranscriptId312849
TrackFilteredModels2
ProteinId312763
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:112046..113953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|312763gene_9567Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|312763mRNA_9567-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9567CDS_9567Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9567 ID=mRNA_9567|Name=jgi.p|Nanoce1779_2|312763|organism=Nannochloropsis oceanica|type=mRNA|length=1851bp
CCCCCCTCCCCCCGACCTCTCTACCTTCTTCTCACCCTCCTCCTCCTTCT
CTCCCAAGATTCCGCCTTCAACTCCGCCCTTTTCCGACGGTTGTTTCTTC
CCTCTGTCCCATGGTATAGAGAAAGAATGCTTGCACGGACCTCCCTTGGA
TCCCTCTCCCTCCTCTGCCTTCTTCGTGTCCTCCTCTTTGCGATACAAAC
CCCTCTTCCTCCTCGCCCTCACGAGCACCAGCACCAGCAGTGCCATCTGC
AGCCACATTCGCAGCTAGAGAGTGTTAGCAGCAGCAGCAGCAGCGGAGAT
GGAAGCCGGCTCTACCTTCTCTCCACCACCAGCGCCATCCTCCTGAACCT
TTCAGCCCAAGCAGAACACATTCACGGCTATGCTTCCCTCCGCCTCGTTC
ACGTCCTCCTCCTCCTTCTTCGGCGGTATGTCCAATTTGCCGAGCGTCTC
TCCTCTTCTTCCTCTTCCCCGTCCTCCGTCTCCTCCTCCTCCTCTCCTGT
CCCTGCTGGTGCTGCGACTGCTCCTTCTCCTCAGCCTTCCTCGTCGTCCC
CCACCCTGCCCTCGCATCATCACTCGGCTTCCAACAGCAGCAGCTATAGC
AGCAGCAGCAGCAGCAGCAGCAGCAACAGCTGCAACAACACCAACGGCAC
CCATCATCCCTCATATCCTACTTCCTCCTCGTCCTCCTCGACAGATGACG
ACCCCTCCCTCACGCACGCTCTCCTCTCAACAGCCTTGCGGGCCATCCTG
TCCTTCTTCACGATTGCCCTCTCTCCTCCCCTTCTTCCCACCAACCTCTC
CCTCATCCACTCCCTCCTCTACTCTCGTCACCATCTCGAGCCTCTCCTCT
CCCACCCTTCCATCCGTGCCCTCGCCTCGGCCTCGTTCCCACCCTCTCTC
CCGCCCGCCCTCCATTCCATCCAAGGGGAAGGGGAAGGGGAAGGAGGGAG
CGAGGTAGGGCTAGGAATTGTGCCTGAGGTATTGCTTTTTTTCGGGCGTC
TTTTCGACGAGACGGAAGAGACGCTGTCCGTGGACAAAGCCATGCTATTG
TTAGAGAAAGGAGCAAGGGAATGGCAGGGTAGGAAGGAGGGAGGGAGGGA
GGGCGGACTAGGCCCAGGGGGAGAGATGGCCATAGACCCTGAATTGAAGT
TTACGTATGAGGAGGAGGCGGAAGCGGAGGCGTTCTTTGTGCCTTACATA
TGGGAAATCGTCCATGCAAAGACCAAGGAGGATGTGTGGTGGATCACACC
GTGTATTTCTGCCTTCACACCACCCCTCCCGCCCTCACTCCCGCCCTCAC
TCCCGCCCTCGGCCCCTTCCGCTCCTCCAGAGGAAGGGAAGGGGGTGGTG
AGAAAATTTCTGGCGGGGGCCATGGGGGTTGTGCCGTCCTCCCTCACATC
CTTGTCTTCTTCTTCTTCCTCTCAGCAGCGACAAAGGCAAGAGCAACCAG
CTTATGGAAGCACTGGGAGTAGAGGTGACAGTAGCAGTCGTGCCTCCCCC
CCCCCCGTGGTGGTGACGATGCACGTCTAGCTGCAGCAGGAGGAGGAGCA
ATAGAATCAGTAGCAGCGTCAACATCAGCTGTATAAAGAGGAAGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAATAGCATTAGCATAAGCCATAC
GTTCATGGGACGAATAGCGACAGTTAGGGATGAGAGCAGGAGCAGCAGGA
GCTGGAGCGGATACAGAAGCAGGAGCAGGAGCAGCAACATGGCGGTGATT
AGGGTAAGGGTTGAAAAGATGAAACAGCATTTATGTTTAATATTAGGTCT
AATTGATGATAGATAGAGAAATCCATCATAACGAATGAGGAAAATAATTA
A
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protein sequence of jgi.p|Nanoce1779_2|312763

>mRNA_9567-protein ID=mRNA_9567-protein|Name=jgi.p|Nanoce1779_2|312763|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MLARTSLGSLSLLCLLRVLLFAIQTPLPPRPHEHQHQQCHLQPHSQLESV
SSSSSSGDGSRLYLLSTTSAILLNLSAQAEHIHGYASLRLVHVLLLLLRR
YVQFAERLSSSSSSPSSVSSSSSPVPAGAATAPSPQPSSSSPTLPSHHHS
ASNSSSYSSSSSSSSSNSCNNTNGTHHPSYPTSSSSSSTDDDPSLTHALL
STALRAILSFFTIALSPPLLPTNLSLIHSLLYSRHHLEPLLSHPSIRALA
SASFPPSLPPALHSIQGEGEGEGGSEVGLGIVPEVLLFFGRLFDETEETL
SVDKAMLLLEKGAREWQGRKEGGREGGLGPGGEMAIDPELKFTYEEEAEA
EAFFVPYIWEIVHAKTKEDVWWITPCISAFTPPLPPSLPPSLPPSAPSAP
PEEGKGVVRKFLAGAMGVVPSSLTSLSSSSSSQQRQRQEQPAYGSTGSRG
DSSSRASPPPVVVTMHV*
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mRNA from alignment at scaffold_44:112046..113953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9567 ID=mRNA_9567|Name=jgi.p|Nanoce1779_2|312763|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp|location=Sequence derived from alignment at scaffold_44:112046..113953- (Nannochloropsis oceanica)
CCCCCCTCCCCCCGACCTCTCTACCTTCTTCTCACCCTCCTCCTCCTTCT
CTCCCAAGATTCCGCCTTCAACTCCGCCCTTTTCCGACGGTTGTTTCTTC
CCTCTGTCCCATGGTATAGAGAAAGAATGCTTGCACGGACCTCCCTTGGA
TCCCTCTCCCTCCTCTGCCTTCTTCGTGTCCTCCTCTTTGCGATACAAAC
CCCTCTTCCTCCTCGCCCTCACGAGCACCAGCACCAGCAGTGCCATCTGC
AGCCACATTCGCAGCTAGAGAGTGTTAGCAGCAGCAGCAGCAGCGGAGAT
GGAAGCCGGCTCTACCTTCTCTCCACCACCAGCGCCATCCTCCTGAACCT
TTCAGCCCAAGCAGAACACATTCACGGCTATGCTTCCCTCCGCCTCGTTC
ACGTCCTCCTCCTCCTTCTTCGGCGGTATGTCCAATTTGCCGAGCGTCTC
TCCTCTTCTTCCTCTTCCCCGTCCTCCGTCTCCTCCTCCTCCTCTCCTGT
CCCTGCTGGTGCTGCGACTGCTCCTTCTCCTCAGCCTTCCTCGTCGTCCC
CCACCCTGCCCTCGCATCATCACTCGGCTTCCAACAGCAGCAGCTATAGC
AGCAGCAGCAGCAGCAGCAGCAGCAACAGCTGCAACAACACCAACGGCAC
CCATCATCCCTCATATCCTACTTCCTCCTCGTCCTCCTCGACAGATGACG
ACCCCTCCCTCACGCACGCTCTCCTCTCAACAGCCTTGCGGGCCATCCTG
TCCTTCTTCACGATTGCCCTCTCTCCTCCCCTTCTTCCCACCAACCTCTC
CCTCATCCACTCCCTCCTCTACTCTCGTCACCATCTCGAGCCTCTCCTCT
CCCACCCTTCCATCCGTGCCCTCGCCTCGGCCTCGTTCCCACCCTCTCTC
CCGCCCGCCCTCCATTCCATCCAAGGGGAAGGGGAAGGGGAAGGAGGGAG
CGAGGTAGGGCTAGGAATTGTGCCTGAGGTATTGCTTTTTTTCGGGCGTC
TTTTCGACGAGACGGAAGAGACGCTGTCCGTGGACAAAGCCATGCTATTG
TTAGAGAAAGGAGCAAGGGAATGGCAGGGTAGGAAGGAGGGAGGGAGGGA
GGGCGGACTAGGCCCAGGGGGAGAGATGGCCATAGACCCTGAATTGAAGT
TTACGTATGAGGAGGAGGCGGAAGCGGAGGCGTTCTTTGTGCCTTACATA
TGGGAAATCGTCCATGCAAAGACCAAGGAGGATGTGTGGTGGATCACACC
GTGTATTTCTGCCTTCACACCACCCCTCCCGCCCTCACTCCCGCCCTCAC
TCCCGCCCTCGGCCCCTTCCGCTCCTCCAGAGGAAGGGAAGGGGGTGGTG
AGAAAATTTCTGGCGGGGGCCATGGGGGTTGTGCCGTCCTCCCTCACATC
CTTGTCTTCTTCTTCTTCCTCTCAGCAGCGACAAAGGCAAGAGCAACCAG
CTTATGGAAGCACTGGGAGTAGAGGTGACAGTAGCAGTCGTGCCTCCCCC
CCCCCCGTGGTGGTGACGATGCACGTCTAGCTGCAGCAGGAGGAGGAGCA
ATAGAATCAGTAGCAGCGTCAACATCAGCTGTATAAAGAGGAAGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAATAGCATTAGCATAA
GCCATACGTTCATGGGACGAATAGCGACAGTTAGGGATGAGAGCAGGAGC
AGCAGGAGCTGGAGCGGATACAGAAGCAGGAGCAGGAGCAGCAACATGGC
GGTGATTAGGGTAAGGGTTGAAAAGATGAAACAGCATTTATGTTTAATAT
TAGGTCTAATTGATGATAGATAGAGAAATCCATCATAACGAATGAGGAAA
ATAATTAA
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Coding sequence (CDS) from alignment at scaffold_44:112046..113953-

>mRNA_9567 ID=mRNA_9567|Name=jgi.p|Nanoce1779_2|312763|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_44:112046..113953- (Nannochloropsis oceanica)
ATGCTTGCACGGACCTCCCTTGGATCCCTCTCCCTCCTCTGCCTTCTTCG
TGTCCTCCTCTTTGCGATACAAACCCCTCTTCCTCCTCGCCCTCACGAGC
ACCAGCACCAGCAGTGCCATCTGCAGCCACATTCGCAGCTAGAGAGTGTT
AGCAGCAGCAGCAGCAGCGGAGATGGAAGCCGGCTCTACCTTCTCTCCAC
CACCAGCGCCATCCTCCTGAACCTTTCAGCCCAAGCAGAACACATTCACG
GCTATGCTTCCCTCCGCCTCGTTCACGTCCTCCTCCTCCTTCTTCGGCGG
TATGTCCAATTTGCCGAGCGTCTCTCCTCTTCTTCCTCTTCCCCGTCCTC
CGTCTCCTCCTCCTCCTCTCCTGTCCCTGCTGGTGCTGCGACTGCTCCTT
CTCCTCAGCCTTCCTCGTCGTCCCCCACCCTGCCCTCGCATCATCACTCG
GCTTCCAACAGCAGCAGCTATAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
CAGCTGCAACAACACCAACGGCACCCATCATCCCTCATATCCTACTTCCT
CCTCGTCCTCCTCGACAGATGACGACCCCTCCCTCACGCACGCTCTCCTC
TCAACAGCCTTGCGGGCCATCCTGTCCTTCTTCACGATTGCCCTCTCTCC
TCCCCTTCTTCCCACCAACCTCTCCCTCATCCACTCCCTCCTCTACTCTC
GTCACCATCTCGAGCCTCTCCTCTCCCACCCTTCCATCCGTGCCCTCGCC
TCGGCCTCGTTCCCACCCTCTCTCCCGCCCGCCCTCCATTCCATCCAAGG
GGAAGGGGAAGGGGAAGGAGGGAGCGAGGTAGGGCTAGGAATTGTGCCTG
AGGTATTGCTTTTTTTCGGGCGTCTTTTCGACGAGACGGAAGAGACGCTG
TCCGTGGACAAAGCCATGCTATTGTTAGAGAAAGGAGCAAGGGAATGGCA
GGGTAGGAAGGAGGGAGGGAGGGAGGGCGGACTAGGCCCAGGGGGAGAGA
TGGCCATAGACCCTGAATTGAAGTTTACGTATGAGGAGGAGGCGGAAGCG
GAGGCGTTCTTTGTGCCTTACATATGGGAAATCGTCCATGCAAAGACCAA
GGAGGATGTGTGGTGGATCACACCGTGTATTTCTGCCTTCACACCACCCC
TCCCGCCCTCACTCCCGCCCTCACTCCCGCCCTCGGCCCCTTCCGCTCCT
CCAGAGGAAGGGAAGGGGGTGGTGAGAAAATTTCTGGCGGGGGCCATGGG
GGTTGTGCCGTCCTCCCTCACATCCTTGTCTTCTTCTTCTTCCTCTCAGC
AGCGACAAAGGCAAGAGCAACCAGCTTATGGAAGCACTGGGAGTAGAGGT
GACAGTAGCAGTCGTGCCTCCCCCCCCCCCGTGGTGGTGACGATGCACGT
CTAG
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Synonyms
Publications