jgi.p|Nanoce1779_2|609179, mRNA_9566 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609179
Unique Name	mRNA_9566
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2178
Alignment location	scaffold_44:109858..112035 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	609265
Track	FilteredModels2
ProteinId	609179

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:109858..112035 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609179	gene_9566	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609179	mRNA_9566-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9566	CDS_9566	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:109858..112035+
coding sequence from alignment at scaffold_44:109858..112035+

mRNA sequence

>mRNA_9566 ID=mRNA_9566|Name=jgi.p|Nanoce1779_2|609179|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp
ACAGGCACACGCCACCATCACCCCTCCACCTCTCCACCATGCGTCGCGTT
GCCATGGGCGCCATGGCCTTGGCCAGCCTCTCTGCCTACTCCACCGCTGC
CCGTGTCGAGGAATGCTTGATCCCCTCCACTTACAGCGTGTCCAAAGACT
ACTTCCCCGCTGCCGCCGGAGCCACCGTGGATGAAGCCCGTAAATTCACC
ATTGAATACGTGCAAGGCTACAAGGTCGTCACCAACCTGAAGGGGAAACG
TCAATATATCCTCTACCCCTGCGGAGCTCCAGAGCCGGACGTCGCAGGTC
TCACCACCCCCGAGGGCTTCGAGCGTCGTTTCCTCAGCGTACCTGCCCAG
AAGGTGGTGACGGCCGAAACGGTGTCGTATGATTTTTTGAACTTGCTTCA
AAACGACCAGACGGAGATGGGGGTGACTGACCGTGTCATCGCCCTCTCCT
CCTACTCCTCCGATGCCTGCGCTCAGAAGGCCTTGAGTTGTTCGTCGAAC
GTCATGGCTCCTGGTGTTAGTGCTGCCAGCCCTGGGTGGGGTGCGAAGGC
GGAGGAATTCGACGCCGTGATGAAAGAGGCCGGTGTGTACTTCGATTACT
CTGAAACTTACGAAGGCACTGCCACCAAGGATAAAACCGTCATTTTCTCG
GCAACCTCTGAAACTAGCCTGTTGGGAAGAGGAGAGTGGATTAAGTTCGT
GGGGGCCTTTTTTAATTTGGACGGGGTGGCGGAGCAGAAGTTTGAAGAGA
CGAAGGAGACGTACTATAAGCTTTCGGATGCGGCGAAGTCTGAGAATGAT
GCACGGCCCAAGGTGAGCTTTCTTCAGGTGGATACTTTTGGAGATAAAAT
AGTTGATTACTACGGGATTTCCGTGGCGGGGTACAAGAGATCGGCGGTCT
TAGATGCGGGAGGATGGATCGCGAATTTGGAGGATTTTGTGGGTTTGCCA
GGAGTCAATTTCACTACGGCGATGAGTACTGCGAGGTGGGAGGTGCCCAA
GGCGGCCGGGCCTGAGAGGGACGCGGCGATCAAGGCTTTCACAGAGCACT
TGAAGGATACGGATATTTTGATTGATGAACGATATTCTTCTACGACGTTG
ACGCGCGATGAGGCGTTGGCGGCGTATGGCTTGACAAGTGCTGATGTCGA
GTTTCCCTTCATTAAGAATGGGAAGTTCTTCCGTCAAGATAAGACCGGGT
CGGCCAGTGGCTCTGCGTGGTTTGAGACGGGTGTTTCTCGTCCCGATGTC
GTCCTGATGGACTTCATCAAGGTCGTCCACCCGACCACGTCTCTGGTGGC
AAAACACGACACGGTCTTCCTTCGTGACCTCTTCAAGGGGGAGGAGAAGA
AGGTCATCACCGCTGAGGAGTGCACGCGTGGCTACCCTGTGTGCGGCCTA
GCCCTCACTGACAAAGCTGCTGCCATCTGCCCCAGCGATTCCTTCAAGAC
CTGCTCTAATGGAAGCAAGGTCTTCCTGTCCACGGCCTCGGGGTGCACTA
AGTACAAGAGCTGCCCGATGAAGAGCTTGAGCGAATACACGGGCCTGCCG
ACGAGCTCCAATATTATTTTGGGTGTTTTCCTGTCCCTGGCTGGTCTCCT
GTTGCTCGCCTGTGGCTTTATGTGGGGGAAGAAGCGAGTGGCGGCTCGCG
CCGGGTCGAATGGCCTTTCCCCCAACGCGGCGAGCATGCATTAATTTATT
TAGTAATTACTTGTTGGAGCGTGGGATTGAGTGACGGAAAGAATGTGGGG
GAAGTGGGGGAGGGGGGTTGGAATGAGGGAGGGAGTTGACTTAACTTCTT
GGGATACGGCAGTCCTAATTTCGCCTTGCGCATTAAGTTCTGGTCCAAGC
TTTCGATGAGTCAATTGAAGTCGCTGGTCCATGACAGAAGAGCGAGGGAG
GAGGAAGTGGGAGGGGAAGGAAGGTCACGGGTGGGTCAGTATATGTGTAG
GTATATGTAGTCACCCTACATACTCGCAACCATCAACCCTCCCCGTATCT
GGAAGGAGAAGAAAAAAAACGGATACAGAGAGTAAAGAAAAAGACGAATT
TGAAGAAGAATGATTTTTAAAATCACTTTTGATTCTTCAAGGGTGGAAAG
AAGGAAAACCAAAGAATCAAGGCCATTAGAGGACTGTGGTAAAGAGGGGA
CCAGTAGAGAAATAATTGGGTGCTATGA

protein sequence of jgi.p|Nanoce1779_2|609179

>mRNA_9566-protein ID=mRNA_9566-protein|Name=jgi.p|Nanoce1779_2|609179|organism=Nannochloropsis oceanica|type=polypeptide|length=552bp
MRRVAMGAMALASLSAYSTAARVEECLIPSTYSVSKDYFPAAAGATVDEA
RKFTIEYVQGYKVVTNLKGKRQYILYPCGAPEPDVAGLTTPEGFERRFLS
VPAQKVVTAETVSYDFLNLLQNDQTEMGVTDRVIALSSYSSDACAQKALS
CSSNVMAPGVSAASPGWGAKAEEFDAVMKEAGVYFDYSETYEGTATKDKT
VIFSATSETSLLGRGEWIKFVGAFFNLDGVAEQKFEETKETYYKLSDAAK
SENDARPKVSFLQVDTFGDKIVDYYGISVAGYKRSAVLDAGGWIANLEDF
VGLPGVNFTTAMSTARWEVPKAAGPERDAAIKAFTEHLKDTDILIDERYS
STTLTRDEALAAYGLTSADVEFPFIKNGKFFRQDKTGSASGSAWFETGVS
RPDVVLMDFIKVVHPTTSLVAKHDTVFLRDLFKGEEKKVITAEECTRGYP
VCGLALTDKAAAICPSDSFKTCSNGSKVFLSTASGCTKYKSCPMKSLSEY
TGLPTSSNIILGVFLSLAGLLLLACGFMWGKKRVAARAGSNGLSPNAASM
H*

mRNA from alignment at scaffold_44:109858..112035+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9566 ID=mRNA_9566|Name=jgi.p|Nanoce1779_2|609179|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp|location=Sequence derived from alignment at scaffold_44:109858..112035+ (Nannochloropsis oceanica)
ACAGGCACACGCCACCATCACCCCTCCACCTCTCCACCATGCGTCGCGTT
GCCATGGGCGCCATGGCCTTGGCCAGCCTCTCTGCCTACTCCACCGCTGC
CCGTGTCGAGGAATGCTTGATCCCCTCCACTTACAGCGTGTCCAAAGACT
ACTTCCCCGCTGCCGCCGGAGCCACCGTGGATGAAGCCCGTAAATTCACC
ATTGAATACGTGCAAGGCTACAAGGTCGTCACCAACCTGAAGGGGAAACG
TCAATATATCCTCTACCCCTGCGGAGCTCCAGAGCCGGACGTCGCAGGTC
TCACCACCCCCGAGGGCTTCGAGCGTCGTTTCCTCAGCGTACCTGCCCAG
AAGGTGGTGACGGCCGAAACGGTGTCGTATGATTTTTTGAACTTGCTTCA
AAACGACCAGACGGAGATGGGGGTGACTGACCGTGTCATCGCCCTCTCCT
CCTACTCCTCCGATGCCTGCGCTCAGAAGGCCTTGAGTTGTTCGTCGAAC
GTCATGGCTCCTGGTGTTAGTGCTGCCAGCCCTGGGTGGGGTGCGAAGGC
GGAGGAATTCGACGCCGTGATGAAAGAGGCCGGTGTGTACTTCGATTACT
CTGAAACTTACGAAGGCACTGCCACCAAGGATAAAACCGTCATTTTCTCG
GCAACCTCTGAAACTAGCCTGTTGGGAAGAGGAGAGTGGATTAAGTTCGT
GGGGGCCTTTTTTAATTTGGACGGGGTGGCGGAGCAGAAGTTTGAAGAGA
CGAAGGAGACGTACTATAAGCTTTCGGATGCGGCGAAGTCTGAGAATGAT
GCACGGCCCAAGGTGAGCTTTCTTCAGGTGGATACTTTTGGAGATAAAAT
AGTTGATTACTACGGGATTTCCGTGGCGGGGTACAAGAGATCGGCGGTCT
TAGATGCGGGAGGATGGATCGCGAATTTGGAGGATTTTGTGGGTTTGCCA
GGAGTCAATTTCACTACGGCGATGAGTACTGCGAGGTGGGAGGTGCCCAA
GGCGGCCGGGCCTGAGAGGGACGCGGCGATCAAGGCTTTCACAGAGCACT
TGAAGGATACGGATATTTTGATTGATGAACGATATTCTTCTACGACGTTG
ACGCGCGATGAGGCGTTGGCGGCGTATGGCTTGACAAGTGCTGATGTCGA
GTTTCCCTTCATTAAGAATGGGAAGTTCTTCCGTCAAGATAAGACCGGGT
CGGCCAGTGGCTCTGCGTGGTTTGAGACGGGTGTTTCTCGTCCCGATGTC
GTCCTGATGGACTTCATCAAGGTCGTCCACCCGACCACGTCTCTGGTGGC
AAAACACGACACGGTCTTCCTTCGTGACCTCTTCAAGGGGGAGGAGAAGA
AGGTCATCACCGCTGAGGAGTGCACGCGTGGCTACCCTGTGTGCGGCCTA
GCCCTCACTGACAAAGCTGCTGCCATCTGCCCCAGCGATTCCTTCAAGAC
CTGCTCTAATGGAAGCAAGGTCTTCCTGTCCACGGCCTCGGGGTGCACTA
AGTACAAGAGCTGCCCGATGAAGAGCTTGAGCGAATACACGGGCCTGCCG
ACGAGCTCCAATATTATTTTGGGTGTTTTCCTGTCCCTGGCTGGTCTCCT
GTTGCTCGCCTGTGGCTTTATGTGGGGGAAGAAGCGAGTGGCGGCTCGCG
CCGGGTCGAATGGCCTTTCCCCCAACGCGGCGAGCATGCATTAATTTATT
TAGTAATTACTTGTTGGAGCGTGGGATTGAGTGACGGAAAGAATGTGGGG
GAAGTGGGGGAGGGGGGTTGGAATGAGGGAGGGAGTTGACTTAACTTCTT
GGGATACGGCAGTCCTAATTTCGCCTTGCGCATTAAGTTCTGGTCCAAGC
TTTCGATGAGTCAATTGAAGTCGCTGGTCCATGACAGAAGAGCGAGGGAG
GAGGAAGTGGGAGGGGAAGGAAGGTCACGGGTGGGTCAGTATATGTGTAG
GTATATGTAGTCACCCTACATACTCGCAACCATCAACCCTCCCCGTATCT
GGAAGGAGAAGAAAAAAAACGGATACAGAGAGTAAAGAAAAAGACGAATT
TGAAGAAGAATGATTTTTAAAATCACTTTTGATTCTTCAAGGGTGGAAAG
AAGGAAAACCAAAGAATCAAGGCCATTAGAGGACTGTGGTAAAGAGGGGA
CCAGTAGAGAAATAATTGGGTGCTATGA

Coding sequence (CDS) from alignment at scaffold_44:109858..112035+

>mRNA_9566 ID=mRNA_9566|Name=jgi.p|Nanoce1779_2|609179|organism=Nannochloropsis oceanica|type=CDS|length=1656bp|location=Sequence derived from alignment at scaffold_44:109858..112035+ (Nannochloropsis oceanica)
ATGCGTCGCGTTGCCATGGGCGCCATGGCCTTGGCCAGCCTCTCTGCCTA
CTCCACCGCTGCCCGTGTCGAGGAATGCTTGATCCCCTCCACTTACAGCG
TGTCCAAAGACTACTTCCCCGCTGCCGCCGGAGCCACCGTGGATGAAGCC
CGTAAATTCACCATTGAATACGTGCAAGGCTACAAGGTCGTCACCAACCT
GAAGGGGAAACGTCAATATATCCTCTACCCCTGCGGAGCTCCAGAGCCGG
ACGTCGCAGGTCTCACCACCCCCGAGGGCTTCGAGCGTCGTTTCCTCAGC
GTACCTGCCCAGAAGGTGGTGACGGCCGAAACGGTGTCGTATGATTTTTT
GAACTTGCTTCAAAACGACCAGACGGAGATGGGGGTGACTGACCGTGTCA
TCGCCCTCTCCTCCTACTCCTCCGATGCCTGCGCTCAGAAGGCCTTGAGT
TGTTCGTCGAACGTCATGGCTCCTGGTGTTAGTGCTGCCAGCCCTGGGTG
GGGTGCGAAGGCGGAGGAATTCGACGCCGTGATGAAAGAGGCCGGTGTGT
ACTTCGATTACTCTGAAACTTACGAAGGCACTGCCACCAAGGATAAAACC
GTCATTTTCTCGGCAACCTCTGAAACTAGCCTGTTGGGAAGAGGAGAGTG
GATTAAGTTCGTGGGGGCCTTTTTTAATTTGGACGGGGTGGCGGAGCAGA
AGTTTGAAGAGACGAAGGAGACGTACTATAAGCTTTCGGATGCGGCGAAG
TCTGAGAATGATGCACGGCCCAAGGTGAGCTTTCTTCAGGTGGATACTTT
TGGAGATAAAATAGTTGATTACTACGGGATTTCCGTGGCGGGGTACAAGA
GATCGGCGGTCTTAGATGCGGGAGGATGGATCGCGAATTTGGAGGATTTT
GTGGGTTTGCCAGGAGTCAATTTCACTACGGCGATGAGTACTGCGAGGTG
GGAGGTGCCCAAGGCGGCCGGGCCTGAGAGGGACGCGGCGATCAAGGCTT
TCACAGAGCACTTGAAGGATACGGATATTTTGATTGATGAACGATATTCT
TCTACGACGTTGACGCGCGATGAGGCGTTGGCGGCGTATGGCTTGACAAG
TGCTGATGTCGAGTTTCCCTTCATTAAGAATGGGAAGTTCTTCCGTCAAG
ATAAGACCGGGTCGGCCAGTGGCTCTGCGTGGTTTGAGACGGGTGTTTCT
CGTCCCGATGTCGTCCTGATGGACTTCATCAAGGTCGTCCACCCGACCAC
GTCTCTGGTGGCAAAACACGACACGGTCTTCCTTCGTGACCTCTTCAAGG
GGGAGGAGAAGAAGGTCATCACCGCTGAGGAGTGCACGCGTGGCTACCCT
GTGTGCGGCCTAGCCCTCACTGACAAAGCTGCTGCCATCTGCCCCAGCGA
TTCCTTCAAGACCTGCTCTAATGGAAGCAAGGTCTTCCTGTCCACGGCCT
CGGGGTGCACTAAGTACAAGAGCTGCCCGATGAAGAGCTTGAGCGAATAC
ACGGGCCTGCCGACGAGCTCCAATATTATTTTGGGTGTTTTCCTGTCCCT
GGCTGGTCTCCTGTTGCTCGCCTGTGGCTTTATGTGGGGGAAGAAGCGAG
TGGCGGCTCGCGCCGGGTCGAATGGCCTTTCCCCCAACGCGGCGAGCATG
CATTAA

Synonyms

Publications