jgi.p|Nanoce1779_2|609174, mRNA_9565 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609174
Unique NamemRNA_9565
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1417
Alignment locationscaffold_44:107185..108781 +

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Properties
Property NameValue
TranscriptId609260
TrackFilteredModels2
ProteinId609174
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:107185..108781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609174gene_9565Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609174mRNA_9565-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9565CDS_9565Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9565 ID=mRNA_9565|Name=jgi.p|Nanoce1779_2|609174|organism=Nannochloropsis oceanica|type=mRNA|length=1417bp
AGGGCCCCTCCGGGCATCGTACGGGCGCGGGGTGGTGGAACACCAAGTCG
TTGAGCTGTGGAGCACAAGTGAAGACGACCCATAAAAAGTATAAACCAAT
TTCATTTCATTTTTAATCCCTGGAATGAGCCGTATGATCGAGGTCGAGCG
CTTGAAACGCTCCATGCTTGTCCGGGCCCGCCTCTTGCAGTGGCGCCTCC
GCGCCCGTCGTCGGCCGCCCGCCCGGTGGTTTTGTGGTGGTGCCGGCAAT
TCGACTGGGAGGGATCAAGTAGCCGCAACGATGTCGTCCTCGCGGATCCC
ATCAAGCAACGCTAACCACGCGGCTTTCATCGACAATGATTACACTGTGC
CACCTAAACTCAATATGTCATGTCATCATCGGAGGATTATGATGCCGTCC
TTCATCCCTCCTCAAGACCCAGCTTCTCACCTCTCTGATGTCGCCGTGGC
CTGTCCCGAGCTCTTGGAGCAGGTAAGACACGGCCAGGAGGGAGGAGAGA
AGGAGGAAGGAAGAGAGTTTGGAGCAGAGAAGAGCGTGCTTTCGAGATGG
TACCAGCACAGACACACGCATGCCTGCAGATCTATTGTCATCCATCATCC
TTTCCTTAATCCCTCTCTCCCCGCTTGCCCTCCTCAGATATTCCATTTCG
TTCGTTCCCGGGAGCTGCGCGCCGTCACTCTCGCTGCTCGTCCTTTCAAG
TATCAGCTCGATTGCCAAGAGGTGTGGCGTTCTCTGTACTTCCGGCGATT
TACCGCCGCCTTTGGAAAGTTTAAAAATTGGAAAATCTGTTATATTATGA
GGGATGAACGCTGTGACAGGATAAGGATGTGGCGGAATTTTTTCGAGGCC
TCAAGGGGAAAGGCTGCAATGCCGGTGCAGTGAAAGAAATTGGGGAAGGA
GGATGAAAGAGGTGGAAGGAGAAATGATTGGATGTTAATTTCAATATCGG
TACCAATGAATTATAGGCGCTGGTTCTGTAAGTAGAAATCAAGAGTACAC
ACTTGAGAAAAGAATGAGCATACGAAGAGGTAGGGAGAGGAGCAGCTAGA
GACGTGGGACCTGGCAATGGAATTTCTTTTAAAAAACTCCTATACGAAAA
ATTGACAAAGCGAAAGACGCACAGACAGGCTGAGAGATAGAAGGTGTGTG
TATATATAAATACGTAAGTAAGGGCCCAGCCACACACTTTTTGAGGGGAG
CAGGAGACGTTTAGGGAAAGAAAACGAGTAAAAATATGGTGGAAGACGCC
ATCTTTTCACCGGGACCAGACTAATAAAGGGCAGTGCCACAAGTAATTAG
ATGGTCTATCCGGTTCCGTTTTTAAAAAGTAATGCTTGATAAAGGATGAT
AAACGAATGGAGGAAAAAAGAAAGGAAGCGTTTGTAGAAATTACTGAAGG
AAAACCACGTCTCCTGG
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protein sequence of jgi.p|Nanoce1779_2|609174

>mRNA_9565-protein ID=mRNA_9565-protein|Name=jgi.p|Nanoce1779_2|609174|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MSRMIEVERLKRSMLVRARLLQWRLRARRRPPARWFCGGAGNSTGRDQVA
ATMSSSRIPSSNANHAAFIDNDYTVPPKLNMSCHHRRIMMPSFIPPQDPA
SHLSDVAVACPELLEQVRHGQEGGEKEEGREFGAEKSVLSRWYQHRHTHA
CRSIVIHHPFLNPSLPACPPQIFHFVRSRELRAVTLAARPFKYQLDCQEV
WRSLYFRRFTAAFGKFKNWKICYIMRDERCDRIRMWRNFFEASRGKAAMP
VQ*
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mRNA from alignment at scaffold_44:107185..108781+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9565 ID=mRNA_9565|Name=jgi.p|Nanoce1779_2|609174|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp|location=Sequence derived from alignment at scaffold_44:107185..108781+ (Nannochloropsis oceanica)
AGGGCCCCTCCGGGCATCGTACGGGCGCGGGGTGGTGGAACACCAAGTCG
TTGAGCTGTGGAGCACAAGTGAAGACGACCCATAAAAAGTATAAACCAAT
TTCATTTCATTTTTAATCCCTGGAATGAGCCGTATGATCGAGGTCGAGCG
CTTGAAACGCTCCATGCTTGTCCGGGCCCGCCTCTTGCAGTGGCGCCTCC
GCGCCCGTCGTCGGCCGCCCGCCCGGTGGTTTTGTGGTGGTGCCGGCAAT
TCGACTGGGAGGGATCAAGTAGCCGCAACGATGTCGTCCTCGCGGATCCC
ATCAAGCAACGCTAACCACGCGGCTTTCATCGACAATGATTACACTGTGC
CACCTAAACTCAATATGTACGTAATTGGAGTCATGTTAGCTTATTTTTGT
ATCTTCTATGCGCAGGAAACGACCTGCAGCTGATGCAGTTCCAGCTGCTC
TAGCAGCCGGCCGTCGGAAATCCCAAGACAAGGATCGGGTTTTCATCGAT
CTCTTACACACAACTGTTACAAAACAAAAATAATCTTGGATTACAGGTCA
TGTCATCATCGGAGGATTATGATGCCGTCCTTCATCCCTCCTCAAGACCC
AGCTTCTCACCTCTCTGATGTCGCCGTGGCCTGTCCCGAGCTCTTGGAGC
AGGTAAGACACGGCCAGGAGGGAGGAGAGAAGGAGGAAGGAAGAGAGTTT
GGAGCAGAGAAGAGCGTGCTTTCGAGATGGTACCAGCACAGACACACGCA
TGCCTGCAGATCTATTGTCATCCATCATCCTTTCCTTAATCCCTCTCTCC
CCGCTTGCCCTCCTCAGATATTCCATTTCGTTCGTTCCCGGGAGCTGCGC
GCCGTCACTCTCGCTGCTCGTCCTTTCAAGTATCAGCTCGATTGCCAAGA
GGTGTGGCGTTCTCTGTACTTCCGGCGATTTACCGCCGCCTTTGGAAAGT
TTAAAAATTGGAAAATCTGTTATATTATGAGGGATGAACGCTGTGACAGG
ATAAGGATGTGGCGGAATTTTTTCGAGGCCTCAAGGGGAAAGGCTGCAAT
GCCGGTGCAGTGAAAGAAATTGGGGAAGGAGGATGAAAGAGGTGGAAGGA
GAAATGATTGGATGTTAATTTCAATATCGGTACCAATGAATTATAGGCGC
TGGTTCTGTAAGTAGAAATCAAGAGTACACACTTGAGAAAAGAATGAGCA
TACGAAGAGGTAGGGAGAGGAGCAGCTAGAGACGTGGGACCTGGCAATGG
AATTTCTTTTAAAAAACTCCTATACGAAAAATTGACAAAGCGAAAGACGC
ACAGACAGGCTGAGAGATAGAAGGTGTGTGTATATATAAATACGTAAGTA
AGGGCCCAGCCACACACTTTTTGAGGGGAGCAGGAGACGTTTAGGGAAAG
AAAACGAGTAAAAATATGGTGGAAGACGCCATCTTTTCACCGGGACCAGA
CTAATAAAGGGCAGTGCCACAAGTAATTAGATGGTCTATCCGGTTCCGTT
TTTAAAAAGTAATGCTTGATAAAGGATGATAAACGAATGGAGGAAAAAAG
AAAGGAAGCGTTTGTAGAAATTACTGAAGGAAAACCACGTCTCCTGG
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Coding sequence (CDS) from alignment at scaffold_44:107185..108781+

>mRNA_9565 ID=mRNA_9565|Name=jgi.p|Nanoce1779_2|609174|organism=Nannochloropsis oceanica|type=CDS|length=1518bp|location=Sequence derived from alignment at scaffold_44:107185..108781+ (Nannochloropsis oceanica)
ATGAGCCGTATGATCGAGGTCGAGCGCTTGAAACGCTCCATGCTTGTCCG
GGCCCGCCTCTTGCAGTGGCGCCTCCGCGCCCGTCGTCGGCCGCCCGCCC
GGTGGTTTTGTGGTGGTGCCGGCAATTCGACTGGGAGGGATCAAGTAGCC
GCAACGATGTCGTCCTCGCGGATCCCATCAAGCAACGCTAACCACGCGGC
TTTCATCGACAATGATTACACTGTGCCACCTAAACTCAATATGTCATGTC
ATCATCGGAGGATTATGATGCCGTCCTTCATCCCTCCTCAAGACCCAGCT
TCTCACCTCTCTGATGTCGCCGTGGCCTGTCCCGAGCTCTTGGAGCAGGT
AAGACACGGCCAGGAGGGAGGAGAGAAGGAGGAAGGAAGAGAGTTTGGAG
CAGAGAAGAGCGTGCTTTCGAGATGGTACCAGCACAGACACACGCATGCC
TGCAGATCTATTGTCATCCATCATCCTTTCCTTAATCCCTCTCTCCCCGC
TTGCCCTCCTCAGATATTCCATTTCGTTCGTTCCCGGGAGCTGCGCGCCG
TCACTCTCGCTGCTCGTCCTTTCAAGTATCAGCTCGATTGCCAAGAGGTG
TGGCGTTCTCTGTACTTCCGGCGATTTACCGCCGCCTTTGGAAAGTTTAA
AAATTGGAAAATCTGTTATATTATGAGGGATGAACGCTGTGACAGGATAA
GGATGTGGCGGAATTTTTTCGAGGCCTCAAGGGGAAAGGCTGCAATGCCG
GTGCAGTGAATGAGCCGTATGATCGAGGTCGAGCGCTTGAAACGCTCCAT
GCTTGTCCGGGCCCGCCTCTTGCAGTGGCGCCTCCGCGCCCGTCGTCGGC
CGCCCGCCCGGTGGTTTTGTGGTGGTGCCGGCAATTCGACTGGGAGGGAT
CAAGTAGCCGCAACGATGTCGTCCTCGCGGATCCCATCAAGCAACGCTAA
CCACGCGGCTTTCATCGACAATGATTACACTGTGCCACCTAAACTCAATA
TGTCATGTCATCATCGGAGGATTATGATGCCGTCCTTCATCCCTCCTCAA
GACCCAGCTTCTCACCTCTCTGATGTCGCCGTGGCCTGTCCCGAGCTCTT
GGAGCAGGTAAGACACGGCCAGGAGGGAGGAGAGAAGGAGGAAGGAAGAG
AGTTTGGAGCAGAGAAGAGCGTGCTTTCGAGATGGTACCAGCACAGACAC
ACGCATGCCTGCAGATCTATTGTCATCCATCATCCTTTCCTTAATCCCTC
TCTCCCCGCTTGCCCTCCTCAGATATTCCATTTCGTTCGTTCCCGGGAGC
TGCGCGCCGTCACTCTCGCTGCTCGTCCTTTCAAGTATCAGCTCGATTGC
CAAGAGGTGTGGCGTTCTCTGTACTTCCGGCGATTTACCGCCGCCTTTGG
AAAGTTTAAAAATTGGAAAATCTGTTATATTATGAGGGATGAACGCTGTG
ACAGGATAAGGATGTGGCGGAATTTTTTCGAGGCCTCAAGGGGAAAGGCT
GCAATGCCGGTGCAGTGA
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Synonyms
Publications