jgi.p|Nanoce1779_2|660873, mRNA_9564 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|660873
Unique Name	mRNA_9564
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1921
Alignment location	scaffold_44:104962..106882 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	660959
Track	FilteredModels2
ProteinId	660873

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:104962..106882 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|660873	gene_9564	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|660873	mRNA_9564-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9564	CDS_9564	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:104962..106882-
coding sequence from alignment at scaffold_44:104962..106882-

mRNA sequence

>mRNA_9564 ID=mRNA_9564|Name=jgi.p|Nanoce1779_2|660873|organism=Nannochloropsis oceanica|type=mRNA|length=1921bp
AGACTCGCTGTATCTGGTTGGAATCTCTGACGAACTCAAAGCTTGTTTGT
GTCGTCTTCCCCTAACAACAACTTCTATTAACCACGAACACACACAATCT
ACAAGTTGGTAGCAGGAGAGAGAAAGTCTAAAGGCGCCAAGCCTGCCCTT
CGGTTGCCGCCATGTCCGCCCCCGAGAAGCCATCGCCCTCGCCCCCTATT
CCGCAGTCTCTCCCCAGTGTCGTGGCTATTGAAGCGGAGCCCGAAGCATT
ACTGATAGGATGGGAGGAAGTACCAAATGCCGTGTGCTACGAGCTCCAGA
TGGCCAGGAAGGCGTCGGAGTCTACAGGCGACGACGAGGAATGGACGTCA
CTATCGGCATCCCGTACGTGCATCTCCCTTCCCTCCCTCCCTCCCACCCT
CCCCATCCCCTCTCCTCCCTCCATTCTTTCTTCCACTACATCGATCGTCA
TTTGTATTGCTGACCAATACTATTCCTCCTCCACTCCCTCAGTCAAAACC
ACCATGGTCCGCAAAAAAAATCTCTGCCCCTCCACCCTTTACCGTTTCCG
GGTCCGAGCCCGTGACAATGTCGATTGGATGCCCTTCCTCCAATCCTCCC
TCCTTCGTACCCTCCCTCCCTCCCTCCAGAAAATGGCGACGCCCAGGGAG
GAGAGAGGGAGGGAGGGAGGGAAAGCGGGGTGTGTGGCTTTGGCCTGGGA
ATCCGTTGATGGGGCCGAGGCATATGTGATAGAGATGAGGGAACAGGGGA
AGGTGAGGTGGAAGGAGGTTGGGAAGGTGGGCGGAACAAGTGTGAAAAAG
AAGAATTTAGACGGGGGGAAAAAGTATCATTTTCGTGTGCGGCCACTGGG
GGAGGGAGGGGAGGTGGGGAGCGAGGAAAATTGGGCTTGGAGTGCATGGA
GCGAGGCGTTAGCCCCTCCCATGCTCTCTCCTGCCTTGAAGAATCTGTTA
GGACCTACATTGTTGGTAGGAGGGCGGGAGGGTGGGACGGCGGGAGGGGT
GGAGGAGCTGCTGGCGGGAAAAGTGGTGGGTGTGTACGCGTCTGCGCACT
GGTGCGGCCCATGTCGACAATTCACTCCCTTGTTGGCCGATTTTTACAAG
AGGATGGGGGGAGGGAGGGAGGGAGGCAGGGAAGGAGGGCGGTTAGAGAT
AGTGTTTGTGAGCTTGGACCAGGAGAAAGAAATGTTCGAGAGTTACTTTG
GAAGCATGCCCTGGTTGGCATTGCCGTGGGAAGACGAAGAAGGGGGGGAG
GGAGGGAGAGAGGGCGTGATAAGTGTATATGGGATTACATCGATTCCCAG
GTTGTTGATATTTGGGAGGGATGGACGGCTGTTGGAGAATAATGCGGTAG
GACAGCAGTACCTCAAAGAGGAGGCATTGAGCGCGTGGTGGGAGGGACGG
TCTTTCCAAGGGCATGTGCATAAAGGAGGAGGGGGTTGCTGTGGAGGGGG
GGGTGGAGGGTGTTAGAAAAGAGTGTTGGGAGGTAGCAGCAGTATTGGGA
GAAGGAGGCGACGAACGTGTTGCACGGGGGCACTCGATGAGAGACAGGAA
GCAAAAGGGTACAAGAGAGAGGGAGTGGAGGAGGGGGTGGAGGAGTTAGG
TGTTGGAAAGCAAGAGTGTTTGAAGGAAGAAGCACGGGAAGTCCGAGAAT
AGAAAGTTATCAGTGCGAGAGGAAAAGAAGGCGATATCTTTTTATGTCTG
TTTGTATGCGGACATTTCTGCTGTATATTTGTTTTTGTTTTGAAGTCGAG
AGCTTCGTGCGTGCGGTTAAAAGATGTCCTCCCATCGCGAACATGACTTG
TTGGTAGTATGGTAGTGCTCTGCTGCCCGACGACATGAGGACAAGATATT
CAACAACCTAATGGAGGGCGGACAAGGAAAATCAAGGCATAGGCGACAAA
GGACGGAGGAGAACAAGGGAA

protein sequence of jgi.p|Nanoce1779_2|660873

>mRNA_9564-protein ID=mRNA_9564-protein|Name=jgi.p|Nanoce1779_2|660873|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MSAPEKPSPSPPIPQSLPSVVAIEAEPEALLIGWEEVPNAVCYELQMARK
ASESTGDDEEWTSLSASRTCISLPSLPPTLPIPSPPSILSSTTSIVICIA
DQYYSSSTPSVKTTMVRKKNLCPSTLYRFRVRARDNVDWMPFLQSSLLRT
LPPSLQKMATPREERGREGGKAGCVALAWESVDGAEAYVIEMREQGKVRW
KEVGKVGGTSVKKKNLDGGKKYHFRVRPLGEGGEVGSEENWAWSAWSEAL
APPMLSPALKNLLGPTLLVGGREGGTAGGVEELLAGKVVGVYASAHWCGP
CRQFTPLLADFYKRMGGGREGGREGGRLEIVFVSLDQEKEMFESYFGSMP
WLALPWEDEEGGEGGREGVISVYGITSIPRLLIFGRDGRLLENNAVGQQY
LKEEALSAWWEGRSFQGHVHKGGGGCCGGGGGGC*

mRNA from alignment at scaffold_44:104962..106882-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9564 ID=mRNA_9564|Name=jgi.p|Nanoce1779_2|660873|organism=Nannochloropsis oceanica|type=mRNA|length=1921bp|location=Sequence derived from alignment at scaffold_44:104962..106882- (Nannochloropsis oceanica)
AGACTCGCTGTATCTGGTTGGAATCTCTGACGAACTCAAAGCTTGTTTGT
GTCGTCTTCCCCTAACAACAACTTCTATTAACCACGAACACACACAATCT
ACAAGTTGGTAGCAGGAGAGAGAAAGTCTAAAGGCGCCAAGCCTGCCCTT
CGGTTGCCGCCATGTCCGCCCCCGAGAAGCCATCGCCCTCGCCCCCTATT
CCGCAGTCTCTCCCCAGTGTCGTGGCTATTGAAGCGGAGCCCGAAGCATT
ACTGATAGGATGGGAGGAAGTACCAAATGCCGTGTGCTACGAGCTCCAGA
TGGCCAGGAAGGCGTCGGAGTCTACAGGCGACGACGAGGAATGGACGTCA
CTATCGGCATCCCGTACGTGCATCTCCCTTCCCTCCCTCCCTCCCACCCT
CCCCATCCCCTCTCCTCCCTCCATTCTTTCTTCCACTACATCGATCGTCA
TTTGTATTGCTGACCAATACTATTCCTCCTCCACTCCCTCAGTCAAAACC
ACCATGGTCCGCAAAAAAAATCTCTGCCCCTCCACCCTTTACCGTTTCCG
GGTCCGAGCCCGTGACAATGTCGATTGGATGCCCTTCCTCCAATCCTCCC
TCCTTCGTACCCTCCCTCCCTCCCTCCAGAAAATGGCGACGCCCAGGGAG
GAGAGAGGGAGGGAGGGAGGGAAAGCGGGGTGTGTGGCTTTGGCCTGGGA
ATCCGTTGATGGGGCCGAGGCATATGTGATAGAGATGAGGGAACAGGGGA
AGGTGAGGTGGAAGGAGGTTGGGAAGGTGGGCGGAACAAGTGTGAAAAAG
AAGAATTTAGACGGGGGGAAAAAGTATCATTTTCGTGTGCGGCCACTGGG
GGAGGGAGGGGAGGTGGGGAGCGAGGAAAATTGGGCTTGGAGTGCATGGA
GCGAGGCGTTAGCCCCTCCCATGCTCTCTCCTGCCTTGAAGAATCTGTTA
GGACCTACATTGTTGGTAGGAGGGCGGGAGGGTGGGACGGCGGGAGGGGT
GGAGGAGCTGCTGGCGGGAAAAGTGGTGGGTGTGTACGCGTCTGCGCACT
GGTGCGGCCCATGTCGACAATTCACTCCCTTGTTGGCCGATTTTTACAAG
AGGATGGGGGGAGGGAGGGAGGGAGGCAGGGAAGGAGGGCGGTTAGAGAT
AGTGTTTGTGAGCTTGGACCAGGAGAAAGAAATGTTCGAGAGTTACTTTG
GAAGCATGCCCTGGTTGGCATTGCCGTGGGAAGACGAAGAAGGGGGGGAG
GGAGGGAGAGAGGGCGTGATAAGTGTATATGGGATTACATCGATTCCCAG
GTTGTTGATATTTGGGAGGGATGGACGGCTGTTGGAGAATAATGCGGTAG
GACAGCAGTACCTCAAAGAGGAGGCATTGAGCGCGTGGTGGGAGGGACGG
TCTTTCCAAGGGCATGTGCATAAAGGAGGAGGGGGTTGCTGTGGAGGGGG
GGGTGGAGGGTGTTAGAAAAGAGTGTTGGGAGGTAGCAGCAGTATTGGGA
GAAGGAGGCGACGAACGTGTTGCACGGGGGCACTCGATGAGAGACAGGAA
GCAAAAGGGTACAAGAGAGAGGGAGTGGAGGAGGGGGTGGAGGAGTTAGG
TGTTGGAAAGCAAGAGTGTTTGAAGGAAGAAGCACGGGAAGTCCGAGAAT
AGAAAGTTATCAGTGCGAGAGGAAAAGAAGGCGATATCTTTTTATGTCTG
TTTGTATGCGGACATTTCTGCTGTATATTTGTTTTTGTTTTGAAGTCGAG
AGCTTCGTGCGTGCGGTTAAAAGATGTCCTCCCATCGCGAACATGACTTG
TTGGTAGTATGGTAGTGCTCTGCTGCCCGACGACATGAGGACAAGATATT
CAACAACCTAATGGAGGGCGGACAAGGAAAATCAAGGCATAGGCGACAAA
GGACGGAGGAGAACAAGGGAA

Coding sequence (CDS) from alignment at scaffold_44:104962..106882-

>mRNA_9564 ID=mRNA_9564|Name=jgi.p|Nanoce1779_2|660873|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_44:104962..106882- (Nannochloropsis oceanica)
ATGTCCGCCCCCGAGAAGCCATCGCCCTCGCCCCCTATTCCGCAGTCTCT
CCCCAGTGTCGTGGCTATTGAAGCGGAGCCCGAAGCATTACTGATAGGAT
GGGAGGAAGTACCAAATGCCGTGTGCTACGAGCTCCAGATGGCCAGGAAG
GCGTCGGAGTCTACAGGCGACGACGAGGAATGGACGTCACTATCGGCATC
CCGTACGTGCATCTCCCTTCCCTCCCTCCCTCCCACCCTCCCCATCCCCT
CTCCTCCCTCCATTCTTTCTTCCACTACATCGATCGTCATTTGTATTGCT
GACCAATACTATTCCTCCTCCACTCCCTCAGTCAAAACCACCATGGTCCG
CAAAAAAAATCTCTGCCCCTCCACCCTTTACCGTTTCCGGGTCCGAGCCC
GTGACAATGTCGATTGGATGCCCTTCCTCCAATCCTCCCTCCTTCGTACC
CTCCCTCCCTCCCTCCAGAAAATGGCGACGCCCAGGGAGGAGAGAGGGAG
GGAGGGAGGGAAAGCGGGGTGTGTGGCTTTGGCCTGGGAATCCGTTGATG
GGGCCGAGGCATATGTGATAGAGATGAGGGAACAGGGGAAGGTGAGGTGG
AAGGAGGTTGGGAAGGTGGGCGGAACAAGTGTGAAAAAGAAGAATTTAGA
CGGGGGGAAAAAGTATCATTTTCGTGTGCGGCCACTGGGGGAGGGAGGGG
AGGTGGGGAGCGAGGAAAATTGGGCTTGGAGTGCATGGAGCGAGGCGTTA
GCCCCTCCCATGCTCTCTCCTGCCTTGAAGAATCTGTTAGGACCTACATT
GTTGGTAGGAGGGCGGGAGGGTGGGACGGCGGGAGGGGTGGAGGAGCTGC
TGGCGGGAAAAGTGGTGGGTGTGTACGCGTCTGCGCACTGGTGCGGCCCA
TGTCGACAATTCACTCCCTTGTTGGCCGATTTTTACAAGAGGATGGGGGG
AGGGAGGGAGGGAGGCAGGGAAGGAGGGCGGTTAGAGATAGTGTTTGTGA
GCTTGGACCAGGAGAAAGAAATGTTCGAGAGTTACTTTGGAAGCATGCCC
TGGTTGGCATTGCCGTGGGAAGACGAAGAAGGGGGGGAGGGAGGGAGAGA
GGGCGTGATAAGTGTATATGGGATTACATCGATTCCCAGGTTGTTGATAT
TTGGGAGGGATGGACGGCTGTTGGAGAATAATGCGGTAGGACAGCAGTAC
CTCAAAGAGGAGGCATTGAGCGCGTGGTGGGAGGGACGGTCTTTCCAAGG
GCATGTGCATAAAGGAGGAGGGGGTTGCTGTGGAGGGGGGGGTGGAGGGT
GTTAG

Synonyms

Publications