jgi.p|Nanoce1779_2|609168, mRNA_9562 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609168
Unique NamemRNA_9562
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1030
Alignment locationscaffold_44:98196..99627 -

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Properties
Property NameValue
TranscriptId609254
TrackFilteredModels2
ProteinId609168
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:98196..99627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609168gene_9562Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609168mRNA_9562-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9562CDS_9562Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9562 ID=mRNA_9562|Name=jgi.p|Nanoce1779_2|609168|organism=Nannochloropsis oceanica|type=mRNA|length=1030bp
ACAGACAACAGCCCGCGCAAAAGCAAGAACGGCCTCCATGTCGATGACGA
CGATGCTCTTGCTGCTGGTCTCCTTCGCCCTGACCACCACGGGCGTGCAT
GCCTTTGTCCCGCCCGCTACATCTACGGTTGCCACACCCAGCAGTCCCAT
CACAGTCCAGCCCCGGGCACGCACGGACCTGGCTCGCACGGCTCGAAGCA
GTGTGGTGATGATGCCCGCGTCGGAGCCCGCAGTGCCGTACAAGGCACCC
GGCACAGACTACCATCGCTATGTAGGTATTTACCAACGCTTGTACTACGA
CCGCGTCCTGCTCTGTGGCCAGTTTATTGATGATCGCGTCGCCAATCAAA
TCATGTCCATTTTGTGGTATCTTCACAACGAGGATAAGAATAAGCCGATC
TACATGTACTTCAATGTCCCGGGGGCGTTGCTTCGACCTGCCTTAAGCGT
GTTCGACACGATGCAAGCCATGAGCAATGAGATTGAGACTATAAACATTG
GATTAACCACGGGAATGGGTGCTTTTTTGTGTGCGGCGGGGACGAAAGGC
CGAAGATTTTCCTTGCCGAATTCCAGGTTCTTGATGCAGAAGACGGGATT
CGAGGAGCAAGTCTACGGCCAAGCCAGCGACATAGTGCTGGAGGTGGACA
GCACCATGCGGGAAAACCAACGTTTTCTCGCCGAGCTCTCCCGCCTCACG
GGCCGCAAGCCCGAGCAGATTAAGAAGGATTTTGGACGTGACTTTTACCT
CTCCGCCGAGGAAAGCGTGGAGTACGGGATGGTCGACCAGGTCATCACCC
CCGGTGCGTGCCTTCCCTCCCTCCCTTCTTACCGCTCTCTCCGCCCTGTG
TGTACACGAACACGACGCACAGACGCACTAGTGGTCATGGAGGTGCAAGC
CGGCTGATCCCTTCCGTCTGTCCCTCCCTTCCTCCCTACCCCCCTCATCC
TTCCTCCTCTCCCTCCGCCCCTCCGTCCCACCCTCCCTCCCATCCTTTCC
GCATACAGGGCGAAAGGATGCGCTATCCGT
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protein sequence of jgi.p|Nanoce1779_2|609168

>mRNA_9562-protein ID=mRNA_9562-protein|Name=jgi.p|Nanoce1779_2|609168|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MSMTTMLLLLVSFALTTTGVHAFVPPATSTVATPSSPITVQPRARTDLAR
TARSSVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDR
VANQIMSILWYLHNEDKNKPIYMYFNVPGALLRPALSVFDTMQAMSNEIE
TINIGLTTGMGAFLCAAGTKGRRFSLPNSRFLMQKTGFEEQVYGQASDIV
LEVDSTMRENQRFLAELSRLTGRKPEQIKKDFGRDFYLSAEESVEYGMVD
QVITPGACLPSLPSYRSLRPVCTRTRRTDALVVMEVQAG*
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mRNA from alignment at scaffold_44:98196..99627-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9562 ID=mRNA_9562|Name=jgi.p|Nanoce1779_2|609168|organism=Nannochloropsis oceanica|type=mRNA|length=1432bp|location=Sequence derived from alignment at scaffold_44:98196..99627- (Nannochloropsis oceanica)
ACAGACAACAGCCCGCGCAAAAGCAAGAACGGCCTCCATGTCGATGACGA
CGATGCTCTTGCTGCTGGTCTCCTTCGCCCTGACCACCACGGGCGTGCAT
GCCTTTGTCCCGCCCGCTACATCTACGGTTGCCACACCCAGCAGTCCCAT
CACAGTCCAGCCCCGGGCACGCACGGACCTGGCTCGCACGGCTCGAAGCA
GTGTGGTGATGATGCCCGCGTCGGAGCCCGCAGTGCCGTACAAGGCACCC
GGCACAGGTATGTGAGCACATTTCAAACCCACCTGTCCTTGGGTTTCTTG
AGCAATTGGTTGAATTCCTTTACTCTGTACGCGTGCTCTATTTCTCCTGT
CCCTGTCCCTCCTTCTTTCTCAACGACCTTGCCACTCTTTCTCCCTTCGT
GCCTGACTCCCTCCCTCCCTCCCAGACTACCATCGCTATGTAGGTATTTA
CCAACGCTTGTACTACGACCGCGTCCTGCTCTGTGGCCAGTTTATTGATG
ATCGCGTCGCCAATCAAATCATGTCCATTTTGTGGTATCTTCACAACGAG
GATAAGAATAAGCCGATCTACATGTACTTCAATGTCCCGGGGGCGTTGCT
TCGACCTGCCTTAAGCGTGTTCGACACGATGCAAGCCATGAGCAATGAGA
TTGAGACTATAAACATTGGATTAACCACGGGAATGGGTGCTTTTTTGTGT
GCGGCGGGGACGAAAGGCCGAAGATTTTCCTTGCCGAATTCCAGGTTCTT
GATGCAGAAGACGGGATTCGAGGAGGTGAGGAAGGACGGAAGGGAGGGAG
AGAGATAGGGTGGGAAGAAGGGACACTGGACGATCTGGTCGTGCTTCTTT
TCCACACCTTTTGATATTACTTGCCACCGTGCCGGCCTTGTCTTCCTGTC
CTGCACATGTACAGATAAAACACTCACCCTCCCTCCCTCTGTCCCCCCCT
TTCTTCCTCCGTCCCTCCCTCCGCGCCTGCCTCCCTCCCTCTCTTCATGG
TCTCCACAGCAAGTCTACGGCCAAGCCAGCGACATAGTGCTGGAGGTGGA
CAGCACCATGCGGGAAAACCAACGTTTTCTCGCCGAGCTCTCCCGCCTCA
CGGGCCGCAAGCCCGAGCAGATTAAGAAGGATTTTGGACGTGACTTTTAC
CTCTCCGCCGAGGAAAGCGTGGAGTACGGGATGGTCGACCAGGTCATCAC
CCCCGGTGCGTGCCTTCCCTCCCTCCCTTCTTACCGCTCTCTCCGCCCTG
TGTGTACACGAACACGACGCACAGACGCACTAGTGGTCATGGAGGTGCAA
GCCGGCTGATCCCTTCCGTCTGTCCCTCCCTTCCTCCCTACCCCCCTCAT
CCTTCCTCCTCTCCCTCCGCCCCTCCGTCCCACCCTCCCTCCCATCCTTT
CCGCATACAGGGCGAAAGGATGCGCTATCCGT
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Coding sequence (CDS) from alignment at scaffold_44:98196..99627-

>mRNA_9562 ID=mRNA_9562|Name=jgi.p|Nanoce1779_2|609168|organism=Nannochloropsis oceanica|type=CDS|length=2610bp|location=Sequence derived from alignment at scaffold_44:98196..99627- (Nannochloropsis oceanica)
CAAGTCTACGGCCAAGCCAGCGACATAGTGCTGGAGGTGGACAGCACCAT
GCGGGAAAACCAACGTTTTCTCGCCGAGCTCTCCCGCCTCACGGGCCGCA
AGCCCGAGCAGATTAAGAAGGATTTTGGACGTGACTTTTACCTCTCCGCC
GAGGAAAGCGTGGAGTACGGGATGGTCGACCAGGTCATCACCCCCGGTGC
GTGCCTTCCCTCCCTCCCTTCTTACCGCTCTCTCCGCCCTGTGTGTACAC
GAACACGACGCACAGACGCACTAGTGGTCATGGAGGTGCAAGCCGGCTGA
ACTACCATCGCTATGTAGGTATTTACCAACGCTTGTACTACGACCGCGTC
CTGCTCTGTGGCCAGTTTATTGATGATCGCGTCGCCAATCAAATCATGTC
CATTTTGTGGTATCTTCACAACGAGGATAAGAATAAGCCGATCTACATGT
ACTTCAATGTCCCGGGGGCGTTGCTTCGACCTGCCTTAAGCGTGTTCGAC
ACGATGCAAGCCATGAGCAATGAGATTGAGACTATAAACATTGGATTAAC
CACGGGAATGGGTGCTTTTTTGTGTGCGGCGGGGACGAAAGGCCGAAGAT
TTTCCTTGCCGAATTCCAGGTTCTTGATGCAGAAGACGGGATTCGAGGAG
ATGTCGATGACGACGATGCTCTTGCTGCTGGTCTCCTTCGCCCTGACCAC
CACGGGCGTGCATGCCTTTGTCCCGCCCGCTACATCTACGGTTGCCACAC
CCAGCAGTCCCATCACAGTCCAGCCCCGGGCACGCACGGACCTGGCTCGC
ACGGCTCGAAGCAGTGTGGTGATGATGCCCGCGTCGGAGCCCGCAGTGCC
GTACAAGGCACCCGGCACAGCAAGTCTACGGCCAAGCCAGCGACATAGTG
CTGGAGGTGGACAGCACCATGCGGGAAAACCAACGTTTTCTCGCCGAGCT
CTCCCGCCTCACGGGCCGCAAGCCCGAGCAGATTAAGAAGGATTTTGGAC
GTGACTTTTACCTCTCCGCCGAGGAAAGCGTGGAGTACGGGATGGTCGAC
CAGGTCATCACCCCCGGTGCGTGCCTTCCCTCCCTCCCTTCTTACCGCTC
TCTCCGCCCTGTGTGTACACGAACACGACGCACAGACGCACTAGTGGTCA
TGGAGGTGCAAGCCGGCTGAACTACCATCGCTATGTAGGTATTTACCAAC
GCTTGTACTACGACCGCGTCCTGCTCTGTGGCCAGTTTATTGATGATCGC
GTCGCCAATCAAATCATGTCCATTTTGTGGTATCTTCACAACGAGGATAA
GAATAAGCCGATCTACATGTACTTCAATGTCCCGGGGGCGTTGCTTCGAC
CTGCCTTAAGCGTGTTCGACACGATGCAAGCCATGAGCAATGAGATTGAG
ACTATAAACATTGGATTAACCACGGGAATGGGTGCTTTTTTGTGTGCGGC
GGGGACGAAAGGCCGAAGATTTTCCTTGCCGAATTCCAGGTTCTTGATGC
AGAAGACGGGATTCGAGGAGATGTCGATGACGACGATGCTCTTGCTGCTG
GTCTCCTTCGCCCTGACCACCACGGGCGTGCATGCCTTTGTCCCGCCCGC
TACATCTACGGTTGCCACACCCAGCAGTCCCATCACAGTCCAGCCCCGGG
CACGCACGGACCTGGCTCGCACGGCTCGAAGCAGTGTGGTGATGATGCCC
GCGTCGGAGCCCGCAGTGCCGTACAAGGCACCCGGCACAGCAAGTCTACG
GCCAAGCCAGCGACATAGTGCTGGAGGTGGACAGCACCATGCGGGAAAAC
CAACGTTTTCTCGCCGAGCTCTCCCGCCTCACGGGCCGCAAGCCCGAGCA
GATTAAGAAGGATTTTGGACGTGACTTTTACCTCTCCGCCGAGGAAAGCG
TGGAGTACGGGATGGTCGACCAGGTCATCACCCCCGGTGCGTGCCTTCCC
TCCCTCCCTTCTTACCGCTCTCTCCGCCCTGTGTGTACACGAACACGACG
CACAGACGCACTAGTGGTCATGGAGGTGCAAGCCGGCTGAACTACCATCG
CTATGTAGGTATTTACCAACGCTTGTACTACGACCGCGTCCTGCTCTGTG
GCCAGTTTATTGATGATCGCGTCGCCAATCAAATCATGTCCATTTTGTGG
TATCTTCACAACGAGGATAAGAATAAGCCGATCTACATGTACTTCAATGT
CCCGGGGGCGTTGCTTCGACCTGCCTTAAGCGTGTTCGACACGATGCAAG
CCATGAGCAATGAGATTGAGACTATAAACATTGGATTAACCACGGGAATG
GGTGCTTTTTTGTGTGCGGCGGGGACGAAAGGCCGAAGATTTTCCTTGCC
GAATTCCAGGTTCTTGATGCAGAAGACGGGATTCGAGGAGATGTCGATGA
CGACGATGCTCTTGCTGCTGGTCTCCTTCGCCCTGACCACCACGGGCGTG
CATGCCTTTGTCCCGCCCGCTACATCTACGGTTGCCACACCCAGCAGTCC
CATCACAGTCCAGCCCCGGGCACGCACGGACCTGGCTCGCACGGCTCGAA
GCAGTGTGGTGATGATGCCCGCGTCGGAGCCCGCAGTGCCGTACAAGGCA
CCCGGCACAG
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Synonyms
Publications