jgi.p|Nanoce1779_2|560686, mRNA_9561 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|560686
Unique NamemRNA_9561
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1108
Alignment locationscaffold_44:96175..97461 +

Link to JBrowse

Properties
Property NameValue
TranscriptId560772
TrackFilteredModels2
ProteinId560686
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:96175..97461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560686gene_9561Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560686mRNA_9561-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9561CDS_9561Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9561 ID=mRNA_9561|Name=jgi.p|Nanoce1779_2|560686|organism=Nannochloropsis oceanica|type=mRNA|length=1108bp
AGCACTTATAAACACAGGGACGCTTCTTAGTGCGTTGCTGCCTGTGCCCA
AGCTCGCGACGTCTTTTAGTATCATCATTCGTCCAAGCCCGTCTTGATCA
AGCGCGCTTCAAGAACAAGCACATACGCCAACAATGCGCAGCTCTAATGT
GCTACAGTACTGCCACCAGCAGCCAGCCGTTTTCCTCGTCCTTCTTCTTG
CCATCAAACTAGTGGCACACGTTACCCACAGCTTCCTCCTCCCTTCCATA
TCATCACCACTACTAAGCCGCGGTGCTATCCTCATTCGTCCCCTGTCTCC
CTCCTCCTCTGCCGTCAGCCGGCAAGGCACAAGTCCTTGGGCTCTAAGCG
CAAAAAAACAAAAGACTTTGGCAGAAGAATTGGACGATTTAAGGTTGGAT
GAGTCGGCTATGAGCGAGGAGGAGAAGAAGAAGCTGCAGGGCTTGCGGGC
CTCGTACAAATTGGAGGAAGTGCTGGATTTCGATGGCAAGACGGGAGAGC
CCCTCCCCGCGGGCGCCTCCTATACGCGCAAAGAAGACGACCCCGACTAC
GATCCCCTCGACGACGCCGAGGACTTGTCAGTGGCCGAAACCGCCTGGTC
TGGCCAAGCCGGGCTAGACGTCCTAACACAGGGTAACAATAATCCAACGG
ACCTCGCCGCCCGCCCCTTCCTCGCTCTGGGTGATGTGGCCATGCTGCTC
CTCTTTGCAAGCATCGGCCGGTCCATTCACACAGGAGGCATTTCCCTCGA
CTTTCAGGTGCTTCAAACCGCCGCTCCTTTCATTGGGGCCTGGTTACTGC
TGGCCCCGCTGCTGGGTGCGTTCACTCCGGGTGCCACGCGGTCGACAGGC
GAAGCCGTTAAAACCGTTTCGTTGGCATGGGCAGTGAGTGTGCCCATGGG
CCTGGTGGGGAGAGGGGTCATCAAGGGGGATATCCCCCCGTTGCCATTCA
TGGCTGTGACGATGGTCACTACCTGGGCGTTGCTGGTGCTGTGGCGGGCG
GCGGTGGTGGTGGTGGCAGGGGGGGAGGTGAAGGGGGGGGGGGGGAACAA
GAAGAGTGGAGTGATGGACTTATTCCGGATGGTGACGACGCTGATTGGCC
GATGGTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|560686

>mRNA_9561-protein ID=mRNA_9561-protein|Name=jgi.p|Nanoce1779_2|560686|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MRSSNVLQYCHQQPAVFLVLLLAIKLVAHVTHSFLLPSISSPLLSRGAIL
IRPLSPSSSAVSRQGTSPWALSAKKQKTLAEELDDLRLDESAMSEEEKKK
LQGLRASYKLEEVLDFDGKTGEPLPAGASYTRKEDDPDYDPLDDAEDLSV
AETAWSGQAGLDVLTQGNNNPTDLAARPFLALGDVAMLLLFASIGRSIHT
GGISLDFQVLQTAAPFIGAWLLLAPLLGAFTPGATRSTGEAVKTVSLAWA
VSVPMGLVGRGVIKGDIPPLPFMAVTMVTTWALLVLWRAAVVVVAGGEVK
GGGGNKKSGVMDLFRMVTTLIGRW*
back to top

mRNA from alignment at scaffold_44:96175..97461+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9561 ID=mRNA_9561|Name=jgi.p|Nanoce1779_2|560686|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp|location=Sequence derived from alignment at scaffold_44:96175..97461+ (Nannochloropsis oceanica)
AGCACTTATAAACACAGGGACGCTTCTTAGTGCGTTGCTGCCTGTGCCCA
AGCTCGCGACGTCTTTTAGTATCATCATTCGTCCAAGCCCGTCTTGATCA
AGCGCGCTTCAAGAACAAGCACATACGCCAACAATGCGCAGCTCTAATGT
GCTACAGTACTGCCACCAGCAGCCAGCCGTTTTCCTCGTCCTTCTTCTTG
CCATCAAACTAGTGGCACACGTTACCCACAGCTTCCTCCTCCCTTCCATA
TCATCACCACTACTAAGCCGCGGTGCTATCCTCATTCGTCCCCTGTCTCC
CTCCTCCTCTGCCGTCAGCCGGCAAGGCACAAGTCCTTGGGCTCTAAGCG
CAAAAAAACAAAAGACTTTGGCAGAAGAATTGGACGATTTAAGGTTGGAT
GAGTCGGCTATGAGCGAGGAGGAGAAGAAGAAGCTGCAGGGCTTGCGGGC
CTCGTACAAATTGGAGGAAGTGCTGGATTTCGATGGCAAGACGGGAGAGG
TAGGTTTTGGGTTGAACGAGGTACGGGTAAATGGAGAAATGGTAAGGGAA
AATGATCTTAGAAGAGATAAGTAGATTGATTTGCCGTATCCTCGTGTTTA
ATGCACCATACTTATACTATCAGTCCTAAGTTGCATCCCTCCCTCCCTCG
CCTCCCTCCCCACACTCCTTTCCCCTAGCCCCTCCCCGCGGGCGCCTCCT
ATACGCGCAAAGAAGACGACCCCGACTACGATCCCCTCGACGACGCCGAG
GACTTGTCAGTGGCCGAAACCGCCTGGTCTGGCCAAGCCGGGCTAGACGT
CCTAACACAGGGTAACAATAATCCAACGGACCTCGCCGCCCGCCCCTTCC
TCGCTCTGGGTGATGTGGCCATGCTGCTCCTCTTTGCAAGCATCGGCCGG
TCCATTCACACAGGAGGCATTTCCCTCGACTTTCAGGTGCTTCAAACCGC
CGCTCCTTTCATTGGGGCCTGGTTACTGCTGGCCCCGCTGCTGGGTGCGT
TCACTCCGGGTGCCACGCGGTCGACAGGCGAAGCCGTTAAAACCGTTTCG
TTGGCATGGGCAGTGAGTGTGCCCATGGGCCTGGTGGGGAGAGGGGTCAT
CAAGGGGGATATCCCCCCGTTGCCATTCATGGCTGTGACGATGGTCACTA
CCTGGGCGTTGCTGGTGCTGTGGCGGGCGGCGGTGGTGGTGGTGGCAGGG
GGGGAGGTGAAGGGGGGGGGGGGGAACAAGAAGAGTGGAGTGATGGACTT
ATTCCGGATGGTGACGACGCTGATTGGCCGATGGTGA
back to top

Coding sequence (CDS) from alignment at scaffold_44:96175..97461+

>mRNA_9561 ID=mRNA_9561|Name=jgi.p|Nanoce1779_2|560686|organism=Nannochloropsis oceanica|type=CDS|length=1950bp|location=Sequence derived from alignment at scaffold_44:96175..97461+ (Nannochloropsis oceanica)
ATGCGCAGCTCTAATGTGCTACAGTACTGCCACCAGCAGCCAGCCGTTTT
CCTCGTCCTTCTTCTTGCCATCAAACTAGTGGCACACGTTACCCACAGCT
TCCTCCTCCCTTCCATATCATCACCACTACTAAGCCGCGGTGCTATCCTC
ATTCGTCCCCTGTCTCCCTCCTCCTCTGCCGTCAGCCGGCAAGGCACAAG
TCCTTGGGCTCTAAGCGCAAAAAAACAAAAGACTTTGGCAGAAGAATTGG
ACGATTTAAGGTTGGATGAGTCGGCTATGAGCGAGGAGGAGAAGAAGAAG
CTGCAGGGCTTGCGGGCCTCGTACAAATTGGAGGAAGTGCTGGATTTCGA
TGGCAAGACGGGAGAGCCCCTCCCCGCGGGCGCCTCCTATACGCGCAAAG
AAGACGACCCCGACTACGATCCCCTCGACGACGCCGAGGACTTGTCAGTG
GCCGAAACCGCCTGGTCTGGCCAAGCCGGGCTAGACGTCCTAACACAGGG
TAACAATAATCCAACGGACCTCGCCGCCCGCCCCTTCCTCGCTCTGGGTG
ATGTGGCCATGCTGCTCCTCTTTGCAAGCATCGGCCGGTCCATTCACACA
GGAGGCATTTCCCTCGACTTTCAGGTGCTTCAAACCGCCGCTCCTTTCAT
TGGGGCCTGGTTACTGCTGGCCCCGCTGCTGGGTGCGTTCACTCCGGGTG
CCACGCGGTCGACAGGCGAAGCCGTTAAAACCGTTTCGTTGGCATGGGCA
GTGAGTGTGCCCATGGGCCTGGTGGGGAGAGGGGTCATCAAGGGGGATAT
CCCCCCGTTGCCATTCATGGCTGTGACGATGGTCACTACCTGGGCGTTGC
TGGTGCTGTGGCGGGCGGCGGTGGTGGTGGTGGCAGGGGGGGAGGTGAAG
GGGGGGGGGGGGAACAAGAAGAGTGGAGTGATGGACTTATTCCGGATGGT
GACGACGCTGATTGGCCGATGGTGAATGCGCAGCTCTAATGTGCTACAGT
ACTGCCACCAGCAGCCAGCCGTTTTCCTCGTCCTTCTTCTTGCCATCAAA
CTAGTGGCACACGTTACCCACAGCTTCCTCCTCCCTTCCATATCATCACC
ACTACTAAGCCGCGGTGCTATCCTCATTCGTCCCCTGTCTCCCTCCTCCT
CTGCCGTCAGCCGGCAAGGCACAAGTCCTTGGGCTCTAAGCGCAAAAAAA
CAAAAGACTTTGGCAGAAGAATTGGACGATTTAAGGTTGGATGAGTCGGC
TATGAGCGAGGAGGAGAAGAAGAAGCTGCAGGGCTTGCGGGCCTCGTACA
AATTGGAGGAAGTGCTGGATTTCGATGGCAAGACGGGAGAGCCCCTCCCC
GCGGGCGCCTCCTATACGCGCAAAGAAGACGACCCCGACTACGATCCCCT
CGACGACGCCGAGGACTTGTCAGTGGCCGAAACCGCCTGGTCTGGCCAAG
CCGGGCTAGACGTCCTAACACAGGGTAACAATAATCCAACGGACCTCGCC
GCCCGCCCCTTCCTCGCTCTGGGTGATGTGGCCATGCTGCTCCTCTTTGC
AAGCATCGGCCGGTCCATTCACACAGGAGGCATTTCCCTCGACTTTCAGG
TGCTTCAAACCGCCGCTCCTTTCATTGGGGCCTGGTTACTGCTGGCCCCG
CTGCTGGGTGCGTTCACTCCGGGTGCCACGCGGTCGACAGGCGAAGCCGT
TAAAACCGTTTCGTTGGCATGGGCAGTGAGTGTGCCCATGGGCCTGGTGG
GGAGAGGGGTCATCAAGGGGGATATCCCCCCGTTGCCATTCATGGCTGTG
ACGATGGTCACTACCTGGGCGTTGCTGGTGCTGTGGCGGGCGGCGGTGGT
GGTGGTGGCAGGGGGGGAGGTGAAGGGGGGGGGGGGGAACAAGAAGAGTG
GAGTGATGGACTTATTCCGGATGGTGACGACGCTGATTGGCCGATGGTGA
back to top
Synonyms
Publications