jgi.p|Nanoce1779_2|642952, mRNA_9560 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|642952
Unique Name	mRNA_9560
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2511
Alignment location	scaffold_44:91761..94271 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	643038
Track	FilteredModels2
ProteinId	642952

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:91761..94271 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|642952	gene_9560	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9560	CDS_9560	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|642952	mRNA_9560-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:91761..94271-
coding sequence from alignment at scaffold_44:91761..94271-

mRNA sequence

>mRNA_9560 ID=mRNA_9560|Name=jgi.p|Nanoce1779_2|642952|organism=Nannochloropsis oceanica|type=mRNA|length=2511bp
ATGGCCCTATTCGAAGGGACCGTCCCTCACGTGAGCACATACCTGGGATT
CCGAGAGCACTTGACCTTGGCTTCGACATGCCGCAAGCTCTACAATTGCT
GGCCTGCACAATCTGGGCTTAAAGAGATGGGCATTTATCTTGATCGTTCG
TCCGTTCCCATCACCACTGCCTCTCCGACGCGTGTGCCCCCACCCGTGTT
GTCATTGTCATCTTTGCCTTCGGTCCAGCGTAATCATACTCTCATCAATA
GTGACAATGTCAGCACCACGGTCGTCAGGGGCAGCAGCAGCAACTACACA
ATCTGGCAGCAGCAACAGCAGCCGTCGCGACAGTGGAAGAGCCTCACCCG
CCTGCTTCGGCATTGGTCCCACCTGCAGACCCTGCGATTCACCGGCGCAA
TCAGCGGCCCTCAAGAAGACTACGTTCAAGAGGCATTGGTGACCATGCCG
CTTGCTCTCTCCCCCCCTAAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCG
GCAGCAGCTTAACAAGCCCAGAACAGTGCTGTCCCAGCTCCAAAGGCTCT
CTTTTTCCAAAATTGGTTTGTTCCCTTACAATGCTTCCTGCATCGCATCG
ACCCTCCTGGGCCCCCTCGGCAGCCACCTCCTCGAACTTGACCTCTCCCA
CAATCCACTTAGGGACGAAGGGCTTTCAACTATATTTAAAGCCATAGCCA
ACAACCTCTCGGATCCCACCGTCCGTCGTCATCGTCCCTCGCCCCCAATC
CTTTCCACCTCCCCCCCTCCTCCGCCTCCCCCGCATTCGCACGGCCTCCC
CCACCTGTCGTCACTCGACCTCTCCTACACGGACTGCACGAGCGTTGGTC
TGCATGTTTTCCACCACGCCCTACGGAAGGGAGGGATGCCGCTCCTTCGC
TCCCTCCTTCTGGCCGGAAACCCTTTGAAGGATGAAGGAGGGCTAGTTTT
AGCAACAATACTAGAAGGTAAGAAACTTCCATTTCTAGAGCAGTTGGATA
CGTCTGCGTGTGGCTTAGGTCCACAGGCGTGCCGGGCATTGCTGAATGCA
GGGAGGGGAGGGAGGGATGGAGGGATGGGGAGGGTGAAGGTTTTGAATGT
TGGCAGTAATTATATTGATTCTGCGGGTTTGGAAGGGCTGGCGAGAGGGA
TGAGGGAAGGGGGGTTTGGGGCATTGAGGTCTTTAAAGCTTGGTCTGAGC
TGGGAGGGAGGGGCTCAAGTATTGGCTTCTGGGTGGTGGGAAGGGAATGG
TAGCAGCAGTAGCAGAGGTAGCGATGGTGGGGGAGGAGGGGGAGGGGGAG
AGGGAGAAGGAGGAGTAGGGGAAGGAAAGGAGGGGAAAAGCGCTTGTCCG
GACTTGAAGCGATTGGATCTCGAGGGTAGTTCCTCCTTAAGCGGACAGGC
TTGGTATGAAATGTGCGTGGGAGGACGGGAAGGAGGGAGGGAGGGAGGGC
TGCCTGCTGGGTTGGAGGAGTTGAATTTGGCGATGTGCAAGAGGCTGGGT
GAGAGGGGGTTGATTGGATTGGTGCTGTGGGGGGAGCGACTGTCAAAGAG
CTGCAATCTGACGTCTTTGGATTTGAGCCATACGGGCTTGGATGGTAGTT
GTGTGGCGACGCGACAAGTCCTGGGGGATTTATTTGTCGTTTTCCCACAC
TTGAAGCGATTAAATTTGCAGGGGAATCTATTGGGGAGAGAGGGAGGGAG
GGCGTTGGCGGATGCCCTGGCTTCTCCTCGGGAGAAGCGCACGTTTTTTC
CTTTGGAGGTGCTAGATGTGTTGGAGACGGGATTGGACCACGGGACGTTG
CTGGCTTTGCTCCAGGGGCTTGGGCTTTCATGTGTTCACTTTCGGGAGCT
TAGGGTCGGACAGAACGATTTAGAGAGCTCGAACTGGGAGGGAGTGATGA
ACATTTTGGGTGGAGAAGGAGGGGAAGGGCGAGGGATGGATAGATTGCGT
GTGTTAGATTTGAGTCGGAGCGTGTTAGGGGACGTTTTTATGTGGCGTTC
TCATGAAAGGCCTGCGTTGATGCGGATGATACAGAAGGTGGAAGTCTTAA
AGATGGCCTGGTGTAATTTAGGGCACGAAGATATAGCGGCCTTGGTGGAG
TCATTCGAGAATGCGACGGATGCGAGGAAAAGAGAAAGAGGGGGAGGAGA
GGCAGTGGGGCTGACGTGCCTTGACCTCTCTTACAACCCTCACATGGGAG
AAGAGGGGATAAGGAGAGTGTTGCATTTCGCCTTCAGTCCGGCAATGGGC
CGACTTCGCACACTGTCATTGGTGAGCGTTGGCCTTGGGGATGCATTCAT
TCAGCACCTGGTCTCCTTGTTAACCGTTGAGAACATCGACAGGTGGGGCC
ACATGGAGTCGATTGATTTGAGAGGGAATGGCCAGATAAGCAAGGAGGCC
AGAGTGAGTTTCCAGGGGCACATTTCCCGGCTTCGGACGAAGCTGATGGA
GAATGAGAGGTGGGGATACGCCAGGAGGGTGCAAGGGATGGTGAGGATTG
CGTCGTCGTGA

protein sequence of jgi.p|Nanoce1779_2|642952

>mRNA_9560-protein ID=mRNA_9560-protein|Name=jgi.p|Nanoce1779_2|642952|organism=Nannochloropsis oceanica|type=polypeptide|length=837bp
MALFEGTVPHVSTYLGFREHLTLASTCRKLYNCWPAQSGLKEMGIYLDRS
SVPITTASPTRVPPPVLSLSSLPSVQRNHTLINSDNVSTTVVRGSSSNYT
IWQQQQQPSRQWKSLTRLLRHWSHLQTLRFTGAISGPQEDYVQEALVTMP
LALSPPKQQQQQQQQRRQQLNKPRTVLSQLQRLSFSKIGLFPYNASCIAS
TLLGPLGSHLLELDLSHNPLRDEGLSTIFKAIANNLSDPTVRRHRPSPPI
LSTSPPPPPPPHSHGLPHLSSLDLSYTDCTSVGLHVFHHALRKGGMPLLR
SLLLAGNPLKDEGGLVLATILEGKKLPFLEQLDTSACGLGPQACRALLNA
GRGGRDGGMGRVKVLNVGSNYIDSAGLEGLARGMREGGFGALRSLKLGLS
WEGGAQVLASGWWEGNGSSSSRGSDGGGGGGGGEGEGGVGEGKEGKSACP
DLKRLDLEGSSSLSGQAWYEMCVGGREGGREGGLPAGLEELNLAMCKRLG
ERGLIGLVLWGERLSKSCNLTSLDLSHTGLDGSCVATRQVLGDLFVVFPH
LKRLNLQGNLLGREGGRALADALASPREKRTFFPLEVLDVLETGLDHGTL
LALLQGLGLSCVHFRELRVGQNDLESSNWEGVMNILGGEGGEGRGMDRLR
VLDLSRSVLGDVFMWRSHERPALMRMIQKVEVLKMAWCNLGHEDIAALVE
SFENATDARKRERGGGEAVGLTCLDLSYNPHMGEEGIRRVLHFAFSPAMG
RLRTLSLVSVGLGDAFIQHLVSLLTVENIDRWGHMESIDLRGNGQISKEA
RVSFQGHISRLRTKLMENERWGYARRVQGMVRIASS*

mRNA from alignment at scaffold_44:91761..94271-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9560 ID=mRNA_9560|Name=jgi.p|Nanoce1779_2|642952|organism=Nannochloropsis oceanica|type=mRNA|length=2511bp|location=Sequence derived from alignment at scaffold_44:91761..94271- (Nannochloropsis oceanica)
ATGGCCCTATTCGAAGGGACCGTCCCTCACGTGAGCACATACCTGGGATT
CCGAGAGCACTTGACCTTGGCTTCGACATGCCGCAAGCTCTACAATTGCT
GGCCTGCACAATCTGGGCTTAAAGAGATGGGCATTTATCTTGATCGTTCG
TCCGTTCCCATCACCACTGCCTCTCCGACGCGTGTGCCCCCACCCGTGTT
GTCATTGTCATCTTTGCCTTCGGTCCAGCGTAATCATACTCTCATCAATA
GTGACAATGTCAGCACCACGGTCGTCAGGGGCAGCAGCAGCAACTACACA
ATCTGGCAGCAGCAACAGCAGCCGTCGCGACAGTGGAAGAGCCTCACCCG
CCTGCTTCGGCATTGGTCCCACCTGCAGACCCTGCGATTCACCGGCGCAA
TCAGCGGCCCTCAAGAAGACTACGTTCAAGAGGCATTGGTGACCATGCCG
CTTGCTCTCTCCCCCCCTAAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCG
GCAGCAGCTTAACAAGCCCAGAACAGTGCTGTCCCAGCTCCAAAGGCTCT
CTTTTTCCAAAATTGGTTTGTTCCCTTACAATGCTTCCTGCATCGCATCG
ACCCTCCTGGGCCCCCTCGGCAGCCACCTCCTCGAACTTGACCTCTCCCA
CAATCCACTTAGGGACGAAGGGCTTTCAACTATATTTAAAGCCATAGCCA
ACAACCTCTCGGATCCCACCGTCCGTCGTCATCGTCCCTCGCCCCCAATC
CTTTCCACCTCCCCCCCTCCTCCGCCTCCCCCGCATTCGCACGGCCTCCC
CCACCTGTCGTCACTCGACCTCTCCTACACGGACTGCACGAGCGTTGGTC
TGCATGTTTTCCACCACGCCCTACGGAAGGGAGGGATGCCGCTCCTTCGC
TCCCTCCTTCTGGCCGGAAACCCTTTGAAGGATGAAGGAGGGCTAGTTTT
AGCAACAATACTAGAAGGTAAGAAACTTCCATTTCTAGAGCAGTTGGATA
CGTCTGCGTGTGGCTTAGGTCCACAGGCGTGCCGGGCATTGCTGAATGCA
GGGAGGGGAGGGAGGGATGGAGGGATGGGGAGGGTGAAGGTTTTGAATGT
TGGCAGTAATTATATTGATTCTGCGGGTTTGGAAGGGCTGGCGAGAGGGA
TGAGGGAAGGGGGGTTTGGGGCATTGAGGTCTTTAAAGCTTGGTCTGAGC
TGGGAGGGAGGGGCTCAAGTATTGGCTTCTGGGTGGTGGGAAGGGAATGG
TAGCAGCAGTAGCAGAGGTAGCGATGGTGGGGGAGGAGGGGGAGGGGGAG
AGGGAGAAGGAGGAGTAGGGGAAGGAAAGGAGGGGAAAAGCGCTTGTCCG
GACTTGAAGCGATTGGATCTCGAGGGTAGTTCCTCCTTAAGCGGACAGGC
TTGGTATGAAATGTGCGTGGGAGGACGGGAAGGAGGGAGGGAGGGAGGGC
TGCCTGCTGGGTTGGAGGAGTTGAATTTGGCGATGTGCAAGAGGCTGGGT
GAGAGGGGGTTGATTGGATTGGTGCTGTGGGGGGAGCGACTGTCAAAGAG
CTGCAATCTGACGTCTTTGGATTTGAGCCATACGGGCTTGGATGGTAGTT
GTGTGGCGACGCGACAAGTCCTGGGGGATTTATTTGTCGTTTTCCCACAC
TTGAAGCGATTAAATTTGCAGGGGAATCTATTGGGGAGAGAGGGAGGGAG
GGCGTTGGCGGATGCCCTGGCTTCTCCTCGGGAGAAGCGCACGTTTTTTC
CTTTGGAGGTGCTAGATGTGTTGGAGACGGGATTGGACCACGGGACGTTG
CTGGCTTTGCTCCAGGGGCTTGGGCTTTCATGTGTTCACTTTCGGGAGCT
TAGGGTCGGACAGAACGATTTAGAGAGCTCGAACTGGGAGGGAGTGATGA
ACATTTTGGGTGGAGAAGGAGGGGAAGGGCGAGGGATGGATAGATTGCGT
GTGTTAGATTTGAGTCGGAGCGTGTTAGGGGACGTTTTTATGTGGCGTTC
TCATGAAAGGCCTGCGTTGATGCGGATGATACAGAAGGTGGAAGTCTTAA
AGATGGCCTGGTGTAATTTAGGGCACGAAGATATAGCGGCCTTGGTGGAG
TCATTCGAGAATGCGACGGATGCGAGGAAAAGAGAAAGAGGGGGAGGAGA
GGCAGTGGGGCTGACGTGCCTTGACCTCTCTTACAACCCTCACATGGGAG
AAGAGGGGATAAGGAGAGTGTTGCATTTCGCCTTCAGTCCGGCAATGGGC
CGACTTCGCACACTGTCATTGGTGAGCGTTGGCCTTGGGGATGCATTCAT
TCAGCACCTGGTCTCCTTGTTAACCGTTGAGAACATCGACAGGTGGGGCC
ACATGGAGTCGATTGATTTGAGAGGGAATGGCCAGATAAGCAAGGAGGCC
AGAGTGAGTTTCCAGGGGCACATTTCCCGGCTTCGGACGAAGCTGATGGA
GAATGAGAGGTGGGGATACGCCAGGAGGGTGCAAGGGATGGTGAGGATTG
CGTCGTCGTGA

Coding sequence (CDS) from alignment at scaffold_44:91761..94271-

>mRNA_9560 ID=mRNA_9560|Name=jgi.p|Nanoce1779_2|642952|organism=Nannochloropsis oceanica|type=CDS|length=2511bp|location=Sequence derived from alignment at scaffold_44:91761..94271- (Nannochloropsis oceanica)
ATGGCCCTATTCGAAGGGACCGTCCCTCACGTGAGCACATACCTGGGATT
CCGAGAGCACTTGACCTTGGCTTCGACATGCCGCAAGCTCTACAATTGCT
GGCCTGCACAATCTGGGCTTAAAGAGATGGGCATTTATCTTGATCGTTCG
TCCGTTCCCATCACCACTGCCTCTCCGACGCGTGTGCCCCCACCCGTGTT
GTCATTGTCATCTTTGCCTTCGGTCCAGCGTAATCATACTCTCATCAATA
GTGACAATGTCAGCACCACGGTCGTCAGGGGCAGCAGCAGCAACTACACA
ATCTGGCAGCAGCAACAGCAGCCGTCGCGACAGTGGAAGAGCCTCACCCG
CCTGCTTCGGCATTGGTCCCACCTGCAGACCCTGCGATTCACCGGCGCAA
TCAGCGGCCCTCAAGAAGACTACGTTCAAGAGGCATTGGTGACCATGCCG
CTTGCTCTCTCCCCCCCTAAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCG
GCAGCAGCTTAACAAGCCCAGAACAGTGCTGTCCCAGCTCCAAAGGCTCT
CTTTTTCCAAAATTGGTTTGTTCCCTTACAATGCTTCCTGCATCGCATCG
ACCCTCCTGGGCCCCCTCGGCAGCCACCTCCTCGAACTTGACCTCTCCCA
CAATCCACTTAGGGACGAAGGGCTTTCAACTATATTTAAAGCCATAGCCA
ACAACCTCTCGGATCCCACCGTCCGTCGTCATCGTCCCTCGCCCCCAATC
CTTTCCACCTCCCCCCCTCCTCCGCCTCCCCCGCATTCGCACGGCCTCCC
CCACCTGTCGTCACTCGACCTCTCCTACACGGACTGCACGAGCGTTGGTC
TGCATGTTTTCCACCACGCCCTACGGAAGGGAGGGATGCCGCTCCTTCGC
TCCCTCCTTCTGGCCGGAAACCCTTTGAAGGATGAAGGAGGGCTAGTTTT
AGCAACAATACTAGAAGGTAAGAAACTTCCATTTCTAGAGCAGTTGGATA
CGTCTGCGTGTGGCTTAGGTCCACAGGCGTGCCGGGCATTGCTGAATGCA
GGGAGGGGAGGGAGGGATGGAGGGATGGGGAGGGTGAAGGTTTTGAATGT
TGGCAGTAATTATATTGATTCTGCGGGTTTGGAAGGGCTGGCGAGAGGGA
TGAGGGAAGGGGGGTTTGGGGCATTGAGGTCTTTAAAGCTTGGTCTGAGC
TGGGAGGGAGGGGCTCAAGTATTGGCTTCTGGGTGGTGGGAAGGGAATGG
TAGCAGCAGTAGCAGAGGTAGCGATGGTGGGGGAGGAGGGGGAGGGGGAG
AGGGAGAAGGAGGAGTAGGGGAAGGAAAGGAGGGGAAAAGCGCTTGTCCG
GACTTGAAGCGATTGGATCTCGAGGGTAGTTCCTCCTTAAGCGGACAGGC
TTGGTATGAAATGTGCGTGGGAGGACGGGAAGGAGGGAGGGAGGGAGGGC
TGCCTGCTGGGTTGGAGGAGTTGAATTTGGCGATGTGCAAGAGGCTGGGT
GAGAGGGGGTTGATTGGATTGGTGCTGTGGGGGGAGCGACTGTCAAAGAG
CTGCAATCTGACGTCTTTGGATTTGAGCCATACGGGCTTGGATGGTAGTT
GTGTGGCGACGCGACAAGTCCTGGGGGATTTATTTGTCGTTTTCCCACAC
TTGAAGCGATTAAATTTGCAGGGGAATCTATTGGGGAGAGAGGGAGGGAG
GGCGTTGGCGGATGCCCTGGCTTCTCCTCGGGAGAAGCGCACGTTTTTTC
CTTTGGAGGTGCTAGATGTGTTGGAGACGGGATTGGACCACGGGACGTTG
CTGGCTTTGCTCCAGGGGCTTGGGCTTTCATGTGTTCACTTTCGGGAGCT
TAGGGTCGGACAGAACGATTTAGAGAGCTCGAACTGGGAGGGAGTGATGA
ACATTTTGGGTGGAGAAGGAGGGGAAGGGCGAGGGATGGATAGATTGCGT
GTGTTAGATTTGAGTCGGAGCGTGTTAGGGGACGTTTTTATGTGGCGTTC
TCATGAAAGGCCTGCGTTGATGCGGATGATACAGAAGGTGGAAGTCTTAA
AGATGGCCTGGTGTAATTTAGGGCACGAAGATATAGCGGCCTTGGTGGAG
TCATTCGAGAATGCGACGGATGCGAGGAAAAGAGAAAGAGGGGGAGGAGA
GGCAGTGGGGCTGACGTGCCTTGACCTCTCTTACAACCCTCACATGGGAG
AAGAGGGGATAAGGAGAGTGTTGCATTTCGCCTTCAGTCCGGCAATGGGC
CGACTTCGCACACTGTCATTGGTGAGCGTTGGCCTTGGGGATGCATTCAT
TCAGCACCTGGTCTCCTTGTTAACCGTTGAGAACATCGACAGGTGGGGCC
ACATGGAGTCGATTGATTTGAGAGGGAATGGCCAGATAAGCAAGGAGGCC
AGAGTGAGTTTCCAGGGGCACATTTCCCGGCTTCGGACGAAGCTGATGGA
GAATGAGAGGTGGGGATACGCCAGGAGGGTGCAAGGGATGGTGAGGATTG
CGTCGTCGTGA

Synonyms

Publications