jgi.p|Nanoce1779_2|574798, mRNA_956 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574798
Unique Name	mRNA_956
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2715
Alignment location	scaffold_2:850037..852751 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574884
Track	FilteredModels2
ProteinId	574798

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:850037..852751 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574798	gene_956	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574798	mRNA_956-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_956	CDS_956	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:850037..852751+
coding sequence from alignment at scaffold_2:850037..852751+

mRNA sequence

>mRNA_956 ID=mRNA_956|Name=jgi.p|Nanoce1779_2|574798|organism=Nannochloropsis oceanica|type=mRNA|length=2715bp
TGGCGAAAAAATTGGAGGCAACGGTAAGCTTTTCATTCTGTATCTATGCT
TTGACCTTTTTGGTATTTGGATTTTACTTTCCATTAAGCATGAGTTGTGA
TTCTCATGTGTTTTTGTTTTATCACCCTTAAAAGACCCTAGCAAACATTG
TGGCTCGATCATACTCCCAATTCTCTCACATTTTCCAAAAACAAAACAGT
GACTACACTGGGAAAAGGTCATGCGGGGAGCCAAATGCATGGAGACGATG
CGAACTGGACGTCAACCGCAGGAGGGGATGGAGGGGAAGGGGCAGAGGGA
GGGAGTCAGACGGGTGATTTGGACAAAGCACTCGATAATACTCACGGCCG
GCCGCATAACCTTTCTAACCTCAAGTCGTGCCTCACGCCTTCGTCAGCTT
CCACGGCGGCAGCAGCAGTGGCTGTGGCTTTGAGTGCGAGTGACCAAGAG
CAGCACAAGCATCAGCAGCAGAACTCTCATCAGAAGAATGTTTACCTGGA
CAACGGCGCTGGATGGCTGGCTGATTTCAAAATTTCTGGTTCGACCACAA
CTTCCACCTCTACCTCTCCTGGAGCGCTGTCCATGGCCAGCCTTCATACG
CCGGCCCCTGCCCCGGGCTCGGTCTCGCACAACTCTTCCTCCTCCTCTTC
CTCCTCGTCCTCGTGTTCGTCTTCACCCTCCCCATCCTCCTCCACCTCGT
CCTCATGTTCCTCCTCGTCGTCATCTAATTCAGGGACTTCGACTGCCTCC
CTTTCTGCGTCTCATTGCTCCTCATCCTTGCTGCTGGGCGCCTCCCCCTT
CCATCCGCAGCTCTACACGACAACAGTCAGTGACGTCGGCGGTTGGCGCG
ACGAAAAGGCAGACACGGTGGACATGCAGGTCCATTCTAAACCACCCACC
CCGCCGCCTTCTACTTGCTCGACGCTTATGGATACGGAGACGATAATGTC
AAGCATGCATAGTGCTTTGCAAGGCGCTAATTCCTCCCCTATCAAGTTCC
ATGGCCTCTACGACCCGCGGTCAACGCAAGATGTGTCCAGGGCCTCGCTT
TCAGTCTTGCCGCCGTCTTTCTCCTCAGCCTCACCTCCGTTCACTTCCCC
AGACTCCTTATCTTCCTCGTCCTCATCTCATTCTACGTCCTCGTCGTCCT
CGTCGTCCTCGTCGTCCTCGTCCTCATCTCATTCTGCGTCCTCGTCGTCA
TCGTCGTCCTCGTCCTCCAACTCGCCCACGCTTGAAGGCATGTCGCAAGG
GGGGCTTCAGCCGTACAAAGGTAGTGGCCCCAGCCACTACAGCTCCTTCA
TGAATGGCAGTGACCAAGGGATGGCAAGGCCTGTCCTGGTCCCTGACGGT
GGACGCGTATTTATCTCATCTTCTACTCGTTCGAAAACGCCGCCTAAGTT
TGGGAAGCATATCTCCTTGGGTTCCATTCTTCACTCTCCAGCCTCCGCAC
CAGTGGTGAAACATACTCAGCACAAGCCGATCTATGTGGGAGCACCGGGG
AGCCAAAGCAATAGCTTCCATTGTCAACCGCAGAGTCAGCCTTATTCCCA
CCAGCATTACCATTATCAGCAATTTCAGCACAAGCACCACCAGGAGCAGC
AGCAGTTGCAACAGGCTGCACCTACCCTCCACCACTCCTCCCGACAGATG
GGCTTTGTCGAGGCGCAAGCTGCTTCACCCTTCCCCGGCGTTCCGGCTCC
TCCTGCTGCTGGTACCGCTGCTCCTCTCGCTCTGTGTGAAGCCCCGGCGA
GAAGCAGCAACAGCATTCGACACGGTAGCAATATCAGAGCCGGAAGTGGC
GGTGCTTTTCCCCTGGGTGTTGTACCGCTCGATAAGATGTCTCGCACCGG
CGGTGCAGTCCATAATTATCAAAATGGTGTTTCCTTCCCGCGGAATTTTA
CTCATCCGCATTCTCCGTACCGGCAACTGCCGCACCAACACCATCGAGAG
TACACGCACAACCACCATGACCCAGCCCCGGTTGTTCCGCAGCAGCCGTT
CCCCACCCCAGTCCATTTCTACCACGCTCCAACAGGCTTTACACATGCAT
CTGCTTCAATTCCAACAGCCGGGGACGTCGATTTGCTGGAAGGCAGTTTT
CGCAGCATAAATCTGACTTCGACCAGCGCCCCAGCGTCCCGCAACAACGC
CGGGGTGCTGCCTCGCCCGACGCCCGCGCCGCCGAGCTCGCTGCCTTCGC
ATCATTCATTGCTGCGAGACCTTTTCCCCGTCGGTTTTCACTCTCCTCCC
TCGGCTTCTTCCGCTTCGTCCTCTCCTCCCCATCTGGGACCACCTATGGC
AGTGGTAGGCAGGGCGGTCATGCACTCACAACAGGAGCAGGAGCAGCAGC
AGGAGCAGCAGAAGCAGCAGAAGCAGCAGGAGCAGCAGGAGCAGGAGCAG
GAGCAGCGAAAGCAGCAGCAGCGGTTGGTGCAGCCCCAGCACGTGCCGCT
GCTACCGGTAGTGACGAAGGCAGAGTCGAGGTCGATGGGGATCAAGGCGC
CAGGATTGCCTGGCTCAGATCAAAGCAATGTCGCTTATGCTTCGATTATT
AAATCGTTTGCGAGCATCGGGGACGAGACTGGGGCAGAAGAAGCACTCAG
TCAGCTGAAGGATAAAAATGTGAAGCCTGATGTTGTGATGTACAACGCGT
TGTTGTCTGCATATGCGGCGAATGGCAATGTTGAAGGAGCCGAGGCAGTT
TTGGGGAGAATGAGG

protein sequence of jgi.p|Nanoce1779_2|574798

>mRNA_956-protein ID=mRNA_956-protein|Name=jgi.p|Nanoce1779_2|574798|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MWEHRGAKAIASIVNRRVSLIPTSITIISNFSTSTTRSSSSCNRLHLPST
TPPDRWALSRRKLLHPSPAFRLLLLLVPLLLSLCVKPRREAATAFDTVAI
SEPEVAVLFPWVLYRSIRCLAPAVQSIIIKMVFPSRGILLIRILRTGNCR
TNTIESTRTTTMTQPRLFRSSRSPPQSISTTLQQALHMHLLQFQQPGTSI
CWKAVFAA*

mRNA from alignment at scaffold_2:850037..852751+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_956 ID=mRNA_956|Name=jgi.p|Nanoce1779_2|574798|organism=Nannochloropsis oceanica|type=mRNA|length=2715bp|location=Sequence derived from alignment at scaffold_2:850037..852751+ (Nannochloropsis oceanica)
TGGCGAAAAAATTGGAGGCAACGGTAAGCTTTTCATTCTGTATCTATGCT
TTGACCTTTTTGGTATTTGGATTTTACTTTCCATTAAGCATGAGTTGTGA
TTCTCATGTGTTTTTGTTTTATCACCCTTAAAAGACCCTAGCAAACATTG
TGGCTCGATCATACTCCCAATTCTCTCACATTTTCCAAAAACAAAACAGT
GACTACACTGGGAAAAGGTCATGCGGGGAGCCAAATGCATGGAGACGATG
CGAACTGGACGTCAACCGCAGGAGGGGATGGAGGGGAAGGGGCAGAGGGA
GGGAGTCAGACGGGTGATTTGGACAAAGCACTCGATAATACTCACGGCCG
GCCGCATAACCTTTCTAACCTCAAGTCGTGCCTCACGCCTTCGTCAGCTT
CCACGGCGGCAGCAGCAGTGGCTGTGGCTTTGAGTGCGAGTGACCAAGAG
CAGCACAAGCATCAGCAGCAGAACTCTCATCAGAAGAATGTTTACCTGGA
CAACGGCGCTGGATGGCTGGCTGATTTCAAAATTTCTGGTTCGACCACAA
CTTCCACCTCTACCTCTCCTGGAGCGCTGTCCATGGCCAGCCTTCATACG
CCGGCCCCTGCCCCGGGCTCGGTCTCGCACAACTCTTCCTCCTCCTCTTC
CTCCTCGTCCTCGTGTTCGTCTTCACCCTCCCCATCCTCCTCCACCTCGT
CCTCATGTTCCTCCTCGTCGTCATCTAATTCAGGGACTTCGACTGCCTCC
CTTTCTGCGTCTCATTGCTCCTCATCCTTGCTGCTGGGCGCCTCCCCCTT
CCATCCGCAGCTCTACACGACAACAGTCAGTGACGTCGGCGGTTGGCGCG
ACGAAAAGGCAGACACGGTGGACATGCAGGTCCATTCTAAACCACCCACC
CCGCCGCCTTCTACTTGCTCGACGCTTATGGATACGGAGACGATAATGTC
AAGCATGCATAGTGCTTTGCAAGGCGCTAATTCCTCCCCTATCAAGTTCC
ATGGCCTCTACGACCCGCGGTCAACGCAAGATGTGTCCAGGGCCTCGCTT
TCAGTCTTGCCGCCGTCTTTCTCCTCAGCCTCACCTCCGTTCACTTCCCC
AGACTCCTTATCTTCCTCGTCCTCATCTCATTCTACGTCCTCGTCGTCCT
CGTCGTCCTCGTCGTCCTCGTCCTCATCTCATTCTGCGTCCTCGTCGTCA
TCGTCGTCCTCGTCCTCCAACTCGCCCACGCTTGAAGGCATGTCGCAAGG
GGGGCTTCAGCCGTACAAAGGTAGTGGCCCCAGCCACTACAGCTCCTTCA
TGAATGGCAGTGACCAAGGGATGGCAAGGCCTGTCCTGGTCCCTGACGGT
GGACGCGTATTTATCTCATCTTCTACTCGTTCGAAAACGCCGCCTAAGTT
TGGGAAGCATATCTCCTTGGGTTCCATTCTTCACTCTCCAGCCTCCGCAC
CAGTGGTGAAACATACTCAGCACAAGCCGATCTATGTGGGAGCACCGGGG
AGCCAAAGCAATAGCTTCCATTGTCAACCGCAGAGTCAGCCTTATTCCCA
CCAGCATTACCATTATCAGCAATTTCAGCACAAGCACCACCAGGAGCAGC
AGCAGTTGCAACAGGCTGCACCTACCCTCCACCACTCCTCCCGACAGATG
GGCTTTGTCGAGGCGCAAGCTGCTTCACCCTTCCCCGGCGTTCCGGCTCC
TCCTGCTGCTGGTACCGCTGCTCCTCTCGCTCTGTGTGAAGCCCCGGCGA
GAAGCAGCAACAGCATTCGACACGGTAGCAATATCAGAGCCGGAAGTGGC
GGTGCTTTTCCCCTGGGTGTTGTACCGCTCGATAAGATGTCTCGCACCGG
CGGTGCAGTCCATAATTATCAAAATGGTGTTTCCTTCCCGCGGAATTTTA
CTCATCCGCATTCTCCGTACCGGCAACTGCCGCACCAACACCATCGAGAG
TACACGCACAACCACCATGACCCAGCCCCGGTTGTTCCGCAGCAGCCGTT
CCCCACCCCAGTCCATTTCTACCACGCTCCAACAGGCTTTACACATGCAT
CTGCTTCAATTCCAACAGCCGGGGACGTCGATTTGCTGGAAGGCAGTTTT
CGCAGCATAAATCTGACTTCGACCAGCGCCCCAGCGTCCCGCAACAACGC
CGGGGTGCTGCCTCGCCCGACGCCCGCGCCGCCGAGCTCGCTGCCTTCGC
ATCATTCATTGCTGCGAGACCTTTTCCCCGTCGGTTTTCACTCTCCTCCC
TCGGCTTCTTCCGCTTCGTCCTCTCCTCCCCATCTGGGACCACCTATGGC
AGTGGTAGGCAGGGCGGTCATGCACTCACAACAGGAGCAGGAGCAGCAGC
AGGAGCAGCAGAAGCAGCAGAAGCAGCAGGAGCAGCAGGAGCAGGAGCAG
GAGCAGCGAAAGCAGCAGCAGCGGTTGGTGCAGCCCCAGCACGTGCCGCT
GCTACCGGTAGTGACGAAGGCAGAGTCGAGGTCGATGGGGATCAAGGCGC
CAGGATTGCCTGGCTCAGATCAAAGCAATGTCGCTTATGCTTCGATTATT
AAATCGTTTGCGAGCATCGGGGACGAGACTGGGGCAGAAGAAGCACTCAG
TCAGCTGAAGGATAAAAATGTGAAGCCTGATGTTGTGATGTACAACGCGT
TGTTGTCTGCATATGCGGCGAATGGCAATGTTGAAGGAGCCGAGGCAGTT
TTGGGGAGAATGAGG

Coding sequence (CDS) from alignment at scaffold_2:850037..852751+

>mRNA_956 ID=mRNA_956|Name=jgi.p|Nanoce1779_2|574798|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_2:850037..852751+ (Nannochloropsis oceanica)
ATGTGGGAGCACCGGGGAGCCAAAGCAATAGCTTCCATTGTCAACCGCAG
AGTCAGCCTTATTCCCACCAGCATTACCATTATCAGCAATTTCAGCACAA
GCACCACCAGGAGCAGCAGCAGTTGCAACAGGCTGCACCTACCCTCCACC
ACTCCTCCCGACAGATGGGCTTTGTCGAGGCGCAAGCTGCTTCACCCTTC
CCCGGCGTTCCGGCTCCTCCTGCTGCTGGTACCGCTGCTCCTCTCGCTCT
GTGTGAAGCCCCGGCGAGAAGCAGCAACAGCATTCGACACGGTAGCAATA
TCAGAGCCGGAAGTGGCGGTGCTTTTCCCCTGGGTGTTGTACCGCTCGAT
AAGATGTCTCGCACCGGCGGTGCAGTCCATAATTATCAAAATGGTGTTTC
CTTCCCGCGGAATTTTACTCATCCGCATTCTCCGTACCGGCAACTGCCGC
ACCAACACCATCGAGAGTACACGCACAACCACCATGACCCAGCCCCGGTT
GTTCCGCAGCAGCCGTTCCCCACCCCAGTCCATTTCTACCACGCTCCAAC
AGGCTTTACACATGCATCTGCTTCAATTCCAACAGCCGGGGACGTCGATT
TGCTGGAAGGCAGTTTTCGCAGCATAA

Synonyms

Publications