jgi.p|Nanoce1779_2|533682, mRNA_9559 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533682
Unique Name	mRNA_9559
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1416
Alignment location	scaffold_44:88781..90406 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	533768
Track	FilteredModels2
ProteinId	533682

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:88781..90406 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533682	gene_9559	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533682	mRNA_9559-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9559	CDS_9559	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:88781..90406+
coding sequence from alignment at scaffold_44:88781..90406+

mRNA sequence

>mRNA_9559 ID=mRNA_9559|Name=jgi.p|Nanoce1779_2|533682|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp
ATGGCGGATGCGAACATAGAGAAGCCGACGCCTACCCTCCTTGCGGAAGG
GCCTGACTTTCTTTTTGAGTACATTTCTCAATGTGAACTACCCACGGACA
GAGGCCTTTTCCATCTCCGTGCGTACCGATACACGCACAAGACAAGTAAG
CTGGTGGTGGAGCCGGTGGTGATGTTCCAGGGCGAGCACCAGGGAGGGAA
GGGGGTTTGGGTCCGAGTGCATGACCAATGCCTGACTTCCGAGGTGCTGG
GCTCTCGACGATGCGATTGCAAAGAACAACTGGAGCTAGCCCTTGATCGT
ATCGTGGGAAATGGAGAAGAGGGGGGGTTGGTAATCTACCTACCACAGGA
AGGGAGGGGGATTGGGCTCGCCAACAAGGTTGCAGCGTACGCGCTGCAGG
AGCAAGGGCTGGACACTGTGGATGCAAATCTGTTCTTGGGGTTTGGGGAC
GATGAAAGAAAGTATGATTATGTTGGATTTATCCTGAAGGATTTGGGGGT
GGAATCCATCAGACTGGCCACGAACAATCCTTTCAAGACGCGGTCGTTAA
GAGCCGTAGGTGTCAAGGTGGATGTGGTGGAGGCCCTGCAAACACCGGCC
AACCGGCATAATCTACACTACCTTCGAACGAAGATCTTGAAGATGGAGCA
TTCGATGGACTTGTCCTTGAATGGGGGAAAAAGGAAGGAAGGAGAGAGGG
AGGAAGGGGGTAGTTTGGATGGGACGGATGCCGCAACCACCCCGGAGCTT
CTCACGGACACCGCAGCAGAATTGGAGCAACCACAGTATTGTTTTGGCAA
GGCCACGGTAGAAGCAGCAATCCAGGCCATGGCCCAAGGAGGGATGGTGG
TGGTGGTGGACGACGAGGATCGCGAAAATGAAGGTGACCTCATCATGGCA
GCCGACGCAGTAACCACCCAACAGATGGCATTCATCGTCCGTTACTGTTC
TGGCGTTGTCTGCGTCTCTCTTGAAGGAAAAGACTTGGACAGACTCGCCC
TCCCTCCTATGATTGCTCAGAACGAGGACCCGAAACACACCGCGTTCGCG
GTCTCTGTCGACTACAAACATGGCACCACCACTGGTATCTCCGCTCATGA
TCGTGCTGCTACCCTCCGAGCCCTCGCTGACCCTGCCAGCAAGGCAAGCG
ACTTTACACGTCCTGGGCATATATTCCCTCTGCGATACACCCCGGGGGGG
GTGAAGAACCGAAGGGGTCACACCGAGGCGGCGCTCGACCTCAGTCGGCT
GGCGGGACGGAGGCCTATGGGGGTGCTGTGCGAGATTTGCTCAGAGGATG
GAAGTATGGCGAAGGTGCCAGAATTGAAGGAATTCTGTAAAACACATGGC
TTGGTTTTAACGAGCATTGCTGATTTGGTGGCGTACAGGATCGAGAAGGA
GAGGAAGGAGAGATAA

protein sequence of jgi.p|Nanoce1779_2|533682

>mRNA_9559-protein ID=mRNA_9559-protein|Name=jgi.p|Nanoce1779_2|533682|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MADANIEKPTPTLLAEGPDFLFEYISQCELPTDRGLFHLRAYRYTHKTSK
LVVEPVVMFQGEHQGGKGVWVRVHDQCLTSEVLGSRRCDCKEQLELALDR
IVGNGEEGGLVIYLPQEGRGIGLANKVAAYALQEQGLDTVDANLFLGFGD
DERKYDYVGFILKDLGVESIRLATNNPFKTRSLRAVGVKVDVVEALQTPA
NRHNLHYLRTKILKMEHSMDLSLNGGKRKEGEREEGGSLDGTDAATTPEL
LTDTAAELEQPQYCFGKATVEAAIQAMAQGGMVVVVDDEDRENEGDLIMA
ADAVTTQQMAFIVRYCSGVVCVSLEGKDLDRLALPPMIAQNEDPKHTAFA
VSVDYKHGTTTGISAHDRAATLRALADPASKASDFTRPGHIFPLRYTPGG
VKNRRGHTEAALDLSRLAGRRPMGVLCEICSEDGSMAKVPELKEFCKTHG
LVLTSIADLVAYRIEKERKER*

mRNA from alignment at scaffold_44:88781..90406+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9559 ID=mRNA_9559|Name=jgi.p|Nanoce1779_2|533682|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp|location=Sequence derived from alignment at scaffold_44:88781..90406+ (Nannochloropsis oceanica)
ATGGCGGATGCGAACATAGAGAAGCCGACGCCTACCCTCCTTGCGGAAGG
GCCTGACTTTCTTTTTGAGTACATTTCTCAATGTGAACTACCCACGGACA
GAGGCCTTTTCCATCTCCGTGCGTACCGATACACGCACAAGACAAGTAAG
CTGGTGGTGGAGCCGGTGGTGATGTTCCAGGGCGAGCACCAGGGAGGGAA
GGGGGTTTGGGTCCGAGTGCATGACCAATGCCTGACTTCCGAGGTGCTGG
GCTCTCGACGATGCGATTGCAAAGAACAACTGGAGCTAGCCCTTGATCGT
ATCGTGGGAAATGGAGAAGAGGGGGGGTTGGTAATCTACCTACCACAGGA
AGGGAGGGGGATTGGGCTCGCCAACAAGGTTGCAGCGTACGCGCTGCAGG
AGCAAGGGCTGGACACTGTGGATGCAAATCTGTTCTTGGGGTTTGGGGAC
GATGAAAGAAAGTATGATTATGTTGGATTTATCCTGAAGGATTTGGGGGT
GGAATCCATCAGACTGGCCACGAACAATCCTTTCAAGACGCGGTCGTTAA
GAGCCGTAGGTGTCAAGGTGGATGTGGTGGAGGCCCTGCAAACACCGGCC
AACCGGCATAATCTACACTACCTTCGAACGAAGATCTTGAAGATGGAGCA
TTCGATGGACTTGTCCTTGAATGGGGGAAAAAGGAAGGAAGGAGAGAGGG
AGGAAGGGGGTAGTTTGGATGGGACGGATGCCGCAACCACCCCGGAGCTT
CTCACGGACAGTGACAAAAATTCCGTGAGGGAGGACCTGGAGGGACTGAT
GGAGGACGAGGAAGGGAGGGAGGGTGAGGACGGGCTGGAGGGGGAGGAGG
AGGACGAGGCACGACTGTTGACGGCGGCCAAGGCGGCAGCAAGGGCCATG
CAAGAAGGAGGGAATGGACAAGTAGGGGCAGGAACCGCGGCAGCATCAGC
AGCGGCAGCAGCAGCAGCAGCCGCAGCAGAATTGGAGCAACCACAGTATT
GTTTTGGCAAGGCCACGGTAGAAGCAGCAATCCAGGCCATGGCCCAAGGA
GGGATGGTGGTGGTGGTGGACGACGAGGATCGCGAAAATGAAGGTGACCT
CATCATGGCAGCCGACGCAGTAACCACCCAACAGATGGCATTCATCGTCC
GTTACTGTTCTGGCGTTGTCTGCGTCTCTCTTGAAGGAAAAGACTTGGAC
AGACTCGCCCTCCCTCCTATGATTGCTCAGAACGAGGACCCGAAACACAC
CGCGTTCGCGGTCTCTGTCGACTACAAACATGGCACCACCACTGGTATCT
CCGCTCATGATCGTGCTGCTACCCTCCGAGCCCTCGCTGACCCTGCCAGC
AAGGCAAGCGACTTTACACGTCCTGGGCATATATTCCCTCTGCGATACAC
CCCGGGGGGGGTGAAGAACCGAAGGGGTCACACCGAGGCGGCGCTCGACC
TCAGTCGGCTGGCGGGACGGAGGCCTATGGGGGTGCTGTGCGAGATTTGC
TCAGAGGATGGAAGTATGGCGAAGGTGCCAGAATTGAAGGAATTCTGTAA
AACACATGGCTTGGTTTTAACGAGCATTGCTGATTTGGTGGCGTACAGGA
TCGAGAAGGAGAGGAAGGAGAGATAA

Coding sequence (CDS) from alignment at scaffold_44:88781..90406+

>mRNA_9559 ID=mRNA_9559|Name=jgi.p|Nanoce1779_2|533682|organism=Nannochloropsis oceanica|type=CDS|length=2832bp|location=Sequence derived from alignment at scaffold_44:88781..90406+ (Nannochloropsis oceanica)
ATGGCGGATGCGAACATAGAGAAGCCGACGCCTACCCTCCTTGCGGAAGG
GCCTGACTTTCTTTTTGAGTACATTTCTCAATGTGAACTACCCACGGACA
GAGGCCTTTTCCATCTCCGTGCGTACCGATACACGCACAAGACAAGTAAG
CTGGTGGTGGAGCCGGTGGTGATGTTCCAGGGCGAGCACCAGGGAGGGAA
GGGGGTTTGGGTCCGAGTGCATGACCAATGCCTGACTTCCGAGGTGCTGG
GCTCTCGACGATGCGATTGCAAAGAACAACTGGAGCTAGCCCTTGATCGT
ATCGTGGGAAATGGAGAAGAGGGGGGGTTGGTAATCTACCTACCACAGGA
AGGGAGGGGGATTGGGCTCGCCAACAAGGTTGCAGCGTACGCGCTGCAGG
AGCAAGGGCTGGACACTGTGGATGCAAATCTGTTCTTGGGGTTTGGGGAC
GATGAAAGAAAGTATGATTATGTTGGATTTATCCTGAAGGATTTGGGGGT
GGAATCCATCAGACTGGCCACGAACAATCCTTTCAAGACGCGGTCGTTAA
GAGCCGTAGGTGTCAAGGTGGATGTGGTGGAGGCCCTGCAAACACCGGCC
AACCGGCATAATCTACACTACCTTCGAACGAAGATCTTGAAGATGGAGCA
TTCGATGGACTTGTCCTTGAATGGGGGAAAAAGGAAGGAAGGAGAGAGGG
AGGAAGGGGGTAGTTTGGATGGGACGGATGCCGCAACCACCCCGGAGCTT
CTCACGGACACCGCAGCAGAATTGGAGCAACCACAGTATTGTTTTGGCAA
GGCCACGGTAGAAGCAGCAATCCAGGCCATGGCCCAAGGAGGGATGGTGG
TGGTGGTGGACGACGAGGATCGCGAAAATGAAGGTGACCTCATCATGGCA
GCCGACGCAGTAACCACCCAACAGATGGCATTCATCGTCCGTTACTGTTC
TGGCGTTGTCTGCGTCTCTCTTGAAGGAAAAGACTTGGACAGACTCGCCC
TCCCTCCTATGATTGCTCAGAACGAGGACCCGAAACACACCGCGTTCGCG
GTCTCTGTCGACTACAAACATGGCACCACCACTGGTATCTCCGCTCATGA
TCGTGCTGCTACCCTCCGAGCCCTCGCTGACCCTGCCAGCAAGGCAAGCG
ACTTTACACGTCCTGGGCATATATTCCCTCTGCGATACACCCCGGGGGGG
GTGAAGAACCGAAGGGGTCACACCGAGGCGGCGCTCGACCTCAGTCGGCT
GGCGGGACGGAGGCCTATGGGGGTGCTGTGCGAGATTTGCTCAGAGGATG
GAAGTATGGCGAAGGTGCCAGAATTGAAGGAATTCTGTAAAACACATGGC
TTGGTTTTAACGAGCATTGCTGATTTGGTGGCGTACAGGATCGAGAAGGA
GAGGAAGGAGAGATAAATGGCGGATGCGAACATAGAGAAGCCGACGCCTA
CCCTCCTTGCGGAAGGGCCTGACTTTCTTTTTGAGTACATTTCTCAATGT
GAACTACCCACGGACAGAGGCCTTTTCCATCTCCGTGCGTACCGATACAC
GCACAAGACAAGTAAGCTGGTGGTGGAGCCGGTGGTGATGTTCCAGGGCG
AGCACCAGGGAGGGAAGGGGGTTTGGGTCCGAGTGCATGACCAATGCCTG
ACTTCCGAGGTGCTGGGCTCTCGACGATGCGATTGCAAAGAACAACTGGA
GCTAGCCCTTGATCGTATCGTGGGAAATGGAGAAGAGGGGGGGTTGGTAA
TCTACCTACCACAGGAAGGGAGGGGGATTGGGCTCGCCAACAAGGTTGCA
GCGTACGCGCTGCAGGAGCAAGGGCTGGACACTGTGGATGCAAATCTGTT
CTTGGGGTTTGGGGACGATGAAAGAAAGTATGATTATGTTGGATTTATCC
TGAAGGATTTGGGGGTGGAATCCATCAGACTGGCCACGAACAATCCTTTC
AAGACGCGGTCGTTAAGAGCCGTAGGTGTCAAGGTGGATGTGGTGGAGGC
CCTGCAAACACCGGCCAACCGGCATAATCTACACTACCTTCGAACGAAGA
TCTTGAAGATGGAGCATTCGATGGACTTGTCCTTGAATGGGGGAAAAAGG
AAGGAAGGAGAGAGGGAGGAAGGGGGTAGTTTGGATGGGACGGATGCCGC
AACCACCCCGGAGCTTCTCACGGACACCGCAGCAGAATTGGAGCAACCAC
AGTATTGTTTTGGCAAGGCCACGGTAGAAGCAGCAATCCAGGCCATGGCC
CAAGGAGGGATGGTGGTGGTGGTGGACGACGAGGATCGCGAAAATGAAGG
TGACCTCATCATGGCAGCCGACGCAGTAACCACCCAACAGATGGCATTCA
TCGTCCGTTACTGTTCTGGCGTTGTCTGCGTCTCTCTTGAAGGAAAAGAC
TTGGACAGACTCGCCCTCCCTCCTATGATTGCTCAGAACGAGGACCCGAA
ACACACCGCGTTCGCGGTCTCTGTCGACTACAAACATGGCACCACCACTG
GTATCTCCGCTCATGATCGTGCTGCTACCCTCCGAGCCCTCGCTGACCCT
GCCAGCAAGGCAAGCGACTTTACACGTCCTGGGCATATATTCCCTCTGCG
ATACACCCCGGGGGGGGTGAAGAACCGAAGGGGTCACACCGAGGCGGCGC
TCGACCTCAGTCGGCTGGCGGGACGGAGGCCTATGGGGGTGCTGTGCGAG
ATTTGCTCAGAGGATGGAAGTATGGCGAAGGTGCCAGAATTGAAGGAATT
CTGTAAAACACATGGCTTGGTTTTAACGAGCATTGCTGATTTGGTGGCGT
ACAGGATCGAGAAGGAGAGGAAGGAGAGATAA

Synonyms

Publications