jgi.p|Nanoce1779_2|609149, mRNA_9558 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609149
Unique NamemRNA_9558
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1450
Alignment locationscaffold_44:85584..87033 -

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Properties
Property NameValue
TranscriptId609235
TrackFilteredModels2
ProteinId609149
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:85584..87033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609149gene_9558Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609149mRNA_9558-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9558CDS_9558Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9558 ID=mRNA_9558|Name=jgi.p|Nanoce1779_2|609149|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp
ACAGTCCATCATGGCGAGAAGAAGACTAACAGGGCCTGCCACGCTCTGCC
CAAGCAACTTGCTCCTCTTTTCTCTTCTCCCTGCAGCCTGCGCCTTCCTC
CTCCCCTCCTCCGGTCCTGCCCGCCTGCTCCACGCCTCCTCCTCACTATC
ATCCTCCGCCTCCACTACCGCCACCTTCCACCCTAGCTGTAGGCCACCAT
CACACCTCTCTGCGGCCCCCACTGCCGCCGGTGAAACAAAGACGACGCAC
CGCGCCCCCGGCACGGCCGACTTGGACTGGGCCAACCTCGGCTTCGAATT
CAGGCAAACGCGCAGTCACATCAAATTCGTCTGGAAAGACGGGAAATGGT
CCGAAGGCGAGCTGGTGGCCGATCCTTACGTAAAAGTGCATATCGCCAAC
ACAGGGTTGCATTACGGCCAGGCGATTTTTGAGGGTCTCAAGGCCTTTGC
CTGGCAGGATGGTTCAGTGCACATTTTCCGCCCTCAGGAGAACGCGAAGC
GTCTACGCATGTCCGCCGAACGTCTGCTCATGACCCCCTTCCCGGAAGAT
AAATTTGTAGAGGCGGTCAAGCGAGTAGTGGCTGATAATGCTGATTTCGT
CCCTCCGTTTGGCACCGGGGGGAGTATGTATATCCGTCCTTTGCTGTTTG
GGAGTGGGGCACGAATCGGTCTTAATCCTGCAGATGAGTACACGCTCCTC
ATCTTGCCAATCCCGGTGGGAGATTACTATAAGGGGGGATTGTCTCCAGT
TTCAGCGCTCGTGATTGATGACTATGACAGGGCCGCGCCTCGGGGCGTCG
GGCATGTGAAAGTAGCGGGAAATTACGCTGCGGATTTATTGCCTAATATG
CTGGGGAAGAAGAAGGGCTTTCCGATTGGGTTGTACCTGGACGCCAAGAC
CAACAGCTACGTAGAGGAGTTCTCGACGTCGAATTTTGTGGCGATAGATT
CGAAGGGGGCGTTTGTGACGCCGAGCAGTCCGACGGTCCTCCCCTCCATT
ACCAACAAGTCCCTCATGGAGCTGGCGGCCGATATGGGCCTCGAAGTGAA
CGTTCGTCCTATCCCTATAACAGAAGTAAAGACCTTGAAAGAAGTCGCGG
CATGCGGAACTGCCGTGGTGGTCACCCCTGTCAATCGCATTGTCTATAAA
GATGAGGTAATTAAGATTGGTGCCGAAGGAGGGGGGGAGGGAGGGACTGG
GCCCATCACCGCGAAGCTGTACGCAAGAGTGCGGGCGATTCAACAGGGAG
AGGAGGAGGATAAGTTCGGATGGACAGTGAAGGTCTAAGGGGGGAGGGAA
AAGGAAGAAAGGAAGGAGGGAAAGGCCTTGGGCGGCGATTGACTTGGCAT
GACGTTTGAGGCATGGACAGTAACAGAAATGAAGATGCTGAGGGCGAGAA
AAGATCAACAAAGAAAGAAAGAAGAAAAGTGAAGCAAATACACTGAACTC
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protein sequence of jgi.p|Nanoce1779_2|609149

>mRNA_9558-protein ID=mRNA_9558-protein|Name=jgi.p|Nanoce1779_2|609149|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MARRRLTGPATLCPSNLLLFSLLPAACAFLLPSSGPARLLHASSSLSSSA
STTATFHPSCRPPSHLSAAPTAAGETKTTHRAPGTADLDWANLGFEFRQT
RSHIKFVWKDGKWSEGELVADPYVKVHIANTGLHYGQAIFEGLKAFAWQD
GSVHIFRPQENAKRLRMSAERLLMTPFPEDKFVEAVKRVVADNADFVPPF
GTGGSMYIRPLLFGSGARIGLNPADEYTLLILPIPVGDYYKGGLSPVSAL
VIDDYDRAAPRGVGHVKVAGNYAADLLPNMLGKKKGFPIGLYLDAKTNSY
VEEFSTSNFVAIDSKGAFVTPSSPTVLPSITNKSLMELAADMGLEVNVRP
IPITEVKTLKEVAACGTAVVVTPVNRIVYKDEVIKIGAEGGGEGGTGPIT
AKLYARVRAIQQGEEEDKFGWTVKV*
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mRNA from alignment at scaffold_44:85584..87033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9558 ID=mRNA_9558|Name=jgi.p|Nanoce1779_2|609149|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp|location=Sequence derived from alignment at scaffold_44:85584..87033- (Nannochloropsis oceanica)
ACAGTCCATCATGGCGAGAAGAAGACTAACAGGGCCTGCCACGCTCTGCC
CAAGCAACTTGCTCCTCTTTTCTCTTCTCCCTGCAGCCTGCGCCTTCCTC
CTCCCCTCCTCCGGTCCTGCCCGCCTGCTCCACGCCTCCTCCTCACTATC
ATCCTCCGCCTCCACTACCGCCACCTTCCACCCTAGCTGTAGGCCACCAT
CACACCTCTCTGCGGCCCCCACTGCCGCCGGTGAAACAAAGACGACGCAC
CGCGCCCCCGGCACGGCCGACTTGGACTGGGCCAACCTCGGCTTCGAATT
CAGGCAAACGCGCAGTCACATCAAATTCGTCTGGAAAGACGGGAAATGGT
CCGAAGGCGAGCTGGTGGCCGATCCTTACGTAAAAGTGCATATCGCCAAC
ACAGGGTTGCATTACGGCCAGGCGATTTTTGAGGGTCTCAAGGCCTTTGC
CTGGCAGGATGGTTCAGTGCACATTTTCCGCCCTCAGGAGAACGCGAAGC
GTCTACGCATGTCCGCCGAACGTCTGCTCATGACCCCCTTCCCGGAAGAT
AAATTTGTAGAGGCGGTCAAGCGAGTAGTGGCTGATAATGCTGATTTCGT
CCCTCCGTTTGGCACCGGGGGGAGTATGTATATCCGTCCTTTGCTGTTTG
GGAGTGGGGCACGAATCGGTCTTAATCCTGCAGATGAGTACACGCTCCTC
ATCTTGCCAATCCCGGTGGGAGATTACTATAAGGGGGGATTGTCTCCAGT
TTCAGCGCTCGTGATTGATGACTATGACAGGGCCGCGCCTCGGGGCGTCG
GGCATGTGAAAGTAGCGGGAAATTACGCTGCGGATTTATTGCCTAATATG
CTGGGGAAGAAGAAGGGCTTTCCGATTGGGTTGTACCTGGACGCCAAGAC
CAACAGCTACGTAGAGGAGTTCTCGACGTCGAATTTTGTGGCGATAGATT
CGAAGGGGGCGTTTGTGACGCCGAGCAGTCCGACGGTCCTCCCCTCCATT
ACCAACAAGTCCCTCATGGAGCTGGCGGCCGATATGGGCCTCGAAGTGAA
CGTTCGTCCTATCCCTATAACAGAAGTAAAGACCTTGAAAGAAGTCGCGG
CATGCGGAACTGCCGTGGTGGTCACCCCTGTCAATCGCATTGTCTATAAA
GATGAGGTAATTAAGATTGGTGCCGAAGGAGGGGGGGAGGGAGGGACTGG
GCCCATCACCGCGAAGCTGTACGCAAGAGTGCGGGCGATTCAACAGGGAG
AGGAGGAGGATAAGTTCGGATGGACAGTGAAGGTCTAAGGGGGGAGGGAA
AAGGAAGAAAGGAAGGAGGGAAAGGCCTTGGGCGGCGATTGACTTGGCAT
GACGTTTGAGGCATGGACAGTAACAGAAATGAAGATGCTGAGGGCGAGAA
AAGATCAACAAAGAAAGAAAGAAGAAAAGTGAAGCAAATACACTGAACTC
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Coding sequence (CDS) from alignment at scaffold_44:85584..87033-

>mRNA_9558 ID=mRNA_9558|Name=jgi.p|Nanoce1779_2|609149|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_44:85584..87033- (Nannochloropsis oceanica)
ATGGCGAGAAGAAGACTAACAGGGCCTGCCACGCTCTGCCCAAGCAACTT
GCTCCTCTTTTCTCTTCTCCCTGCAGCCTGCGCCTTCCTCCTCCCCTCCT
CCGGTCCTGCCCGCCTGCTCCACGCCTCCTCCTCACTATCATCCTCCGCC
TCCACTACCGCCACCTTCCACCCTAGCTGTAGGCCACCATCACACCTCTC
TGCGGCCCCCACTGCCGCCGGTGAAACAAAGACGACGCACCGCGCCCCCG
GCACGGCCGACTTGGACTGGGCCAACCTCGGCTTCGAATTCAGGCAAACG
CGCAGTCACATCAAATTCGTCTGGAAAGACGGGAAATGGTCCGAAGGCGA
GCTGGTGGCCGATCCTTACGTAAAAGTGCATATCGCCAACACAGGGTTGC
ATTACGGCCAGGCGATTTTTGAGGGTCTCAAGGCCTTTGCCTGGCAGGAT
GGTTCAGTGCACATTTTCCGCCCTCAGGAGAACGCGAAGCGTCTACGCAT
GTCCGCCGAACGTCTGCTCATGACCCCCTTCCCGGAAGATAAATTTGTAG
AGGCGGTCAAGCGAGTAGTGGCTGATAATGCTGATTTCGTCCCTCCGTTT
GGCACCGGGGGGAGTATGTATATCCGTCCTTTGCTGTTTGGGAGTGGGGC
ACGAATCGGTCTTAATCCTGCAGATGAGTACACGCTCCTCATCTTGCCAA
TCCCGGTGGGAGATTACTATAAGGGGGGATTGTCTCCAGTTTCAGCGCTC
GTGATTGATGACTATGACAGGGCCGCGCCTCGGGGCGTCGGGCATGTGAA
AGTAGCGGGAAATTACGCTGCGGATTTATTGCCTAATATGCTGGGGAAGA
AGAAGGGCTTTCCGATTGGGTTGTACCTGGACGCCAAGACCAACAGCTAC
GTAGAGGAGTTCTCGACGTCGAATTTTGTGGCGATAGATTCGAAGGGGGC
GTTTGTGACGCCGAGCAGTCCGACGGTCCTCCCCTCCATTACCAACAAGT
CCCTCATGGAGCTGGCGGCCGATATGGGCCTCGAAGTGAACGTTCGTCCT
ATCCCTATAACAGAAGTAAAGACCTTGAAAGAAGTCGCGGCATGCGGAAC
TGCCGTGGTGGTCACCCCTGTCAATCGCATTGTCTATAAAGATGAGGTAA
TTAAGATTGGTGCCGAAGGAGGGGGGGAGGGAGGGACTGGGCCCATCACC
GCGAAGCTGTACGCAAGAGTGCGGGCGATTCAACAGGGAGAGGAGGAGGA
TAAGTTCGGATGGACAGTGAAGGTCTAA
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Synonyms
Publications