jgi.p|Nanoce1779_2|609137, mRNA_9556 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609137
Unique NamemRNA_9556
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length480
Alignment locationscaffold_44:83699..84497 -

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Properties
Property NameValue
TranscriptId609223
TrackFilteredModels2
ProteinId609137
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:83699..84497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609137gene_9556Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609137mRNA_9556-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9556CDS_9556Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9556 ID=mRNA_9556|Name=jgi.p|Nanoce1779_2|609137|organism=Nannochloropsis oceanica|type=mRNA|length=480bp
AATAGCTTGCTGTTCGTCTAGCCGCGCCTTGCATCACCCTCGCCGCCCTC
ATACACTTCATCAGAGCAGCATGAGCAGCAGCAGTAGCACCCCCGTCGAC
CTCAACTACAGGGACGGCTCGAGGGAAGGTCGTCTGAAGTTCAGCAAGAG
GGCAGAGCAGCACCTCCGAGACGAACTGGCCCTGCACGCGCGGAAAGAAT
GCAAGGATGCCTTGGGCGCGTTCGCGGCCTGCGCCAAAGAGAATGGGATG
TTTGTCGTATTCAAGTGCCGTGGACTCAACAATGCCATGAACGCCTGCTT
AAGCGAGTACACGTCCGAGAGCAAATTCGAAGAATGGAAGAAAACCCGCG
GGATGGCCTTATCGGGCGAATGAATATAGATATGAATACACCTCCACATA
GAAGAAGAGAAAGAGGATAGAAGACAAAAAGCACGTATTGGTCACCCGAA
GCAAAAAATAGAGACCATACGTATCAATAA
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protein sequence of jgi.p|Nanoce1779_2|609137

>mRNA_9556-protein ID=mRNA_9556-protein|Name=jgi.p|Nanoce1779_2|609137|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MSSSSSTPVDLNYRDGSREGRLKFSKRAEQHLRDELALHARKECKDALGA
FAACAKENGMFVVFKCRGLNNAMNACLSEYTSESKFEEWKKTRGMALSGE
*
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mRNA from alignment at scaffold_44:83699..84497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9556 ID=mRNA_9556|Name=jgi.p|Nanoce1779_2|609137|organism=Nannochloropsis oceanica|type=mRNA|length=799bp|location=Sequence derived from alignment at scaffold_44:83699..84497- (Nannochloropsis oceanica)
AATAGCTTGCTGTTCGTCTAGCCGCGCCTTGCATCACCCTCGCCGCCCTC
ATACACTTCATCAGAGCAGCATGAGCAGCAGCAGTAGCACCCCCGTCGAC
CTCAACTACAGGGACGGCTCGAGGGAAGGTCGTCTGAAGTTCAGCAAGAG
GGCAGAGCAGGTTTGGGGACAGAGAGTGAGGTGGCTGCCTCGCACGTGGT
CGTCGTGATTCTCACATATCTTTATCTGCACTCCTCTTCCCCTTAGCACC
TCCGAGACGAACTGGCCCTGCACGCGCGGAAAGAATGCAAGGATGCCTTG
GGCGCGTTCGCGGCCTGCGCCAAAGAGAATGGGATGTTTGTCGTATTCAA
GTGCCGTGGACTCAACAATGCCAGTAAGTGGGAATGAAAGGATGGGAGTG
TGGACATGCTCCATGAGCTTGCTTGACCTGCCCCCTATCCCTCCGTGGGT
CTCTGATTATGCAATGGATCACAAAAAGAGTGTCGTTTCCCACGATCTAT
CCGCATTTTCTTACTCTCACAGTCTGTTTGCTTTCCGCATCATGTCTCGG
CCTGCCCTATTCTTGCTCACGCCCTTGGTCCCTCCCTCCCTTTCTCCAAC
ACACAGTGAACGCCTGCTTAAGCGAGTACACGTCCGAGAGCAAATTCGAA
GAATGGAAGAAAACCCGCGGGATGGCCTTATCGGGCGAATGAATATAGAT
ATGAATACACCTCCACATAGAAGAAGAGAAAGAGGATAGAAGACAAAAAG
CACGTATTGGTCACCCGAAGCAAAAAATAGAGACCATACGTATCAATAA
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Coding sequence (CDS) from alignment at scaffold_44:83699..84497-

>mRNA_9556 ID=mRNA_9556|Name=jgi.p|Nanoce1779_2|609137|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_44:83699..84497- (Nannochloropsis oceanica)
TGAACGCCTGCTTAAGCGAGTACACGTCCGAGAGCAAATTCGAAGAATGG
AAGAAAACCCGCGGGATGGCCTTATCGGGCGAATGACACCTCCGAGACGA
ACTGGCCCTGCACGCGCGGAAAGAATGCAAGGATGCCTTGGGCGCGTTCG
CGGCCTGCGCCAAAGAGAATGGGATGTTTGTCGTATTCAAGTGCCGTGGA
CTCAACAATGCCAATGAGCAGCAGCAGTAGCACCCCCGTCGACCTCAACT
ACAGGGACGGCTCGAGGGAAGGTCGTCTGAAGTTCAGCAAGAGGGCAGAG
CAGTGAACGCCTGCTTAAGCGAGTACACGTCCGAGAGCAAATTCGAAGAA
TGGAAGAAAACCCGCGGGATGGCCTTATCGGGCGAATGACACCTCCGAGA
CGAACTGGCCCTGCACGCGCGGAAAGAATGCAAGGATGCCTTGGGCGCGT
TCGCGGCCTGCGCCAAAGAGAATGGGATGTTTGTCGTATTCAAGTGCCGT
GGACTCAACAATGCCAATGAGCAGCAGCAGTAGCACCCCCGTCGACCTCA
ACTACAGGGACGGCTCGAGGGAAGGTCGTCTGAAGTTCAGCAAGAGGGCA
GAGCAGTGAACGCCTGCTTAAGCGAGTACACGTCCGAGAGCAAATTCGAA
GAATGGAAGAAAACCCGCGGGATGGCCTTATCGGGCGAATGACACCTCCG
AGACGAACTGGCCCTGCACGCGCGGAAAGAATGCAAGGATGCCTTGGGCG
CGTTCGCGGCCTGCGCCAAAGAGAATGGGATGTTTGTCGTATTCAAGTGC
CGTGGACTCAACAATGCCAATGAGCAGCAGCAGTAGCACCCCCGTCGACC
TCAACTACAGGGACGGCTCGAGGGAAGGTCGTCTGAAGTTCAGCAAGAGG
GCAGAGCAG
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Synonyms
Publications