jgi.p|Nanoce1779_2|312521, mRNA_9553 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|312521
Unique NamemRNA_9553
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1154
Alignment locationscaffold_44:75694..76847 +

Link to JBrowse

Properties
Property NameValue
TranscriptId312607
TrackFilteredModels2
ProteinId312521
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:75694..76847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|312521gene_9553Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|312521mRNA_9553-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9553CDS_9553Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9553 ID=mRNA_9553|Name=jgi.p|Nanoce1779_2|312521|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp
TGTGTGGTGGAGGAATGTATGACGTTGTCAATGCCTGCTGCTCATTTTTT
CCATGTAAATACAAAAGGAGGCAGAAATTAGGAGAGGAGGGGGGTTGCAA
AGTAGGCTCAGACAACAAGTTCTTCTCATCTACGCTGTCAGGCGCAGTAT
AGAGCAGGTAAAACGGCGTATGTTGATATGAATACATCACGGCCTTTGCA
TTTCGAGGGTGAAGGAATTTCTACTGCCTTGTCTCTCCTCTCTTCTGTTG
AGCGTCCTTACCTTAGATGTGATGCTTGTATAGCCGGTGCGGTGATGGGG
AGACAGGGTGTGCTCGACGACGAGGATGAGGATGAGAATAGGTCGACGCC
CAGAGGGAAGAGGATTTACGGCAAGGAGTGGCCGAGGAGCGGCAGCAAGC
ATGCGACCAACGCAATGATGCAGCTTGCGAAGCTTGACGTGCTGGTCTGG
ATATGTGATGGTTCGCGCGGGCGTTGGTCGTGGGGGCTTGTGCTCGATCC
GCCGTGCTGCACGCATGATTCGAAGGATAGGAAGAGAGCAAGGCCAGCCA
CGTCCCCTCCGTGGTGTCCCGCCATCTTGAGCCCGCCTTCGAACTCCCTC
GTCGCGCTTGTGGTGGTCGTACTGATGCTCTCCATAGGTCATGGCGTCGC
ATGGTGTAGACAATGGGAGCAGGGACACGACAGCCGCACGCAGAGAGCCC
CTCATTACCAGAAGCATCATGATGATGCACAGGCCTCACATCACGCCGTG
TCTCCTAGTATCGCGCTTGGTCGCTTGAGGCAAGTCGCTGCCTTCAATAA
AAGGGAGGCCACCAGCTTACCGTACTCTAACTTGCATTCACTTTGTGTAA
GTTGTGCCGCCTACTTGCTGTCTGGAGACAAAAGGATGGGGATCGCGCTC
CAGGCACAACCGAGCGCGGCCCTCGGAACGGAACGCTATTGCTATTCTTG
ATTGCACTTCATGGATCGTTGCTATGGAAGGTGCATGTTTAGCGCCCACT
TGCCAAACCATGGCTGGGCTGCTGCGAACATGCAGGCACATTTGTTGGTG
CTTTGAAACTCAGTCAGGCGGGGAGCCTCCTCCGGAGCTCGCACCGTCAC
ACACACACACACACACCCCGAGGCGGGGGGTGCGCCGATCCACAGCACAC
TTTG
back to top

protein sequence of jgi.p|Nanoce1779_2|312521

>mRNA_9553-protein ID=mRNA_9553-protein|Name=jgi.p|Nanoce1779_2|312521|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MNTSRPLHFEGEGISTALSLLSSVERPYLRCDACIAGAVMGRQGVLDDED
EDENRSTPRGKRIYGKEWPRSGSKHATNAMMQLAKLDVLVWICDGSRGRW
SWGLVLDPPCCTHDSKDRKRARPATSPPWCPAILSPPSNSLVALVVVVLM
LSIGHGVAWCRQWEQGHDSRTQRAPHYQKHHDDAQASHHAVSPSIALGRL
RQVAAFNKREATSLPYSNLHSLCVSCAAYLLSGDKRMGIALQAQPSAALG
TERYCYS*
back to top

mRNA from alignment at scaffold_44:75694..76847+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9553 ID=mRNA_9553|Name=jgi.p|Nanoce1779_2|312521|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp|location=Sequence derived from alignment at scaffold_44:75694..76847+ (Nannochloropsis oceanica)
TGTGTGGTGGAGGAATGTATGACGTTGTCAATGCCTGCTGCTCATTTTTT
CCATGTAAATACAAAAGGAGGCAGAAATTAGGAGAGGAGGGGGGTTGCAA
AGTAGGCTCAGACAACAAGTTCTTCTCATCTACGCTGTCAGGCGCAGTAT
AGAGCAGGTAAAACGGCGTATGTTGATATGAATACATCACGGCCTTTGCA
TTTCGAGGGTGAAGGAATTTCTACTGCCTTGTCTCTCCTCTCTTCTGTTG
AGCGTCCTTACCTTAGATGTGATGCTTGTATAGCCGGTGCGGTGATGGGG
AGACAGGGTGTGCTCGACGACGAGGATGAGGATGAGAATAGGTCGACGCC
CAGAGGGAAGAGGATTTACGGCAAGGAGTGGCCGAGGAGCGGCAGCAAGC
ATGCGACCAACGCAATGATGCAGCTTGCGAAGCTTGACGTGCTGGTCTGG
ATATGTGATGGTTCGCGCGGGCGTTGGTCGTGGGGGCTTGTGCTCGATCC
GCCGTGCTGCACGCATGATTCGAAGGATAGGAAGAGAGCAAGGCCAGCCA
CGTCCCCTCCGTGGTGTCCCGCCATCTTGAGCCCGCCTTCGAACTCCCTC
GTCGCGCTTGTGGTGGTCGTACTGATGCTCTCCATAGGTCATGGCGTCGC
ATGGTGTAGACAATGGGAGCAGGGACACGACAGCCGCACGCAGAGAGCCC
CTCATTACCAGAAGCATCATGATGATGCACAGGCCTCACATCACGCCGTG
TCTCCTAGTATCGCGCTTGGTCGCTTGAGGCAAGTCGCTGCCTTCAATAA
AAGGGAGGCCACCAGCTTACCGTACTCTAACTTGCATTCACTTTGTGTAA
GTTGTGCCGCCTACTTGCTGTCTGGAGACAAAAGGATGGGGATCGCGCTC
CAGGCACAACCGAGCGCGGCCCTCGGAACGGAACGCTATTGCTATTCTTG
ATTGCACTTCATGGATCGTTGCTATGGAAGGTGCATGTTTAGCGCCCACT
TGCCAAACCATGGCTGGGCTGCTGCGAACATGCAGGCACATTTGTTGGTG
CTTTGAAACTCAGTCAGGCGGGGAGCCTCCTCCGGAGCTCGCACCGTCAC
ACACACACACACACACCCCGAGGCGGGGGGTGCGCCGATCCACAGCACAC
TTTG
back to top

Coding sequence (CDS) from alignment at scaffold_44:75694..76847+

>mRNA_9553 ID=mRNA_9553|Name=jgi.p|Nanoce1779_2|312521|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_44:75694..76847+ (Nannochloropsis oceanica)
ATGAATACATCACGGCCTTTGCATTTCGAGGGTGAAGGAATTTCTACTGC
CTTGTCTCTCCTCTCTTCTGTTGAGCGTCCTTACCTTAGATGTGATGCTT
GTATAGCCGGTGCGGTGATGGGGAGACAGGGTGTGCTCGACGACGAGGAT
GAGGATGAGAATAGGTCGACGCCCAGAGGGAAGAGGATTTACGGCAAGGA
GTGGCCGAGGAGCGGCAGCAAGCATGCGACCAACGCAATGATGCAGCTTG
CGAAGCTTGACGTGCTGGTCTGGATATGTGATGGTTCGCGCGGGCGTTGG
TCGTGGGGGCTTGTGCTCGATCCGCCGTGCTGCACGCATGATTCGAAGGA
TAGGAAGAGAGCAAGGCCAGCCACGTCCCCTCCGTGGTGTCCCGCCATCT
TGAGCCCGCCTTCGAACTCCCTCGTCGCGCTTGTGGTGGTCGTACTGATG
CTCTCCATAGGTCATGGCGTCGCATGGTGTAGACAATGGGAGCAGGGACA
CGACAGCCGCACGCAGAGAGCCCCTCATTACCAGAAGCATCATGATGATG
CACAGGCCTCACATCACGCCGTGTCTCCTAGTATCGCGCTTGGTCGCTTG
AGGCAAGTCGCTGCCTTCAATAAAAGGGAGGCCACCAGCTTACCGTACTC
TAACTTGCATTCACTTTGTGTAAGTTGTGCCGCCTACTTGCTGTCTGGAG
ACAAAAGGATGGGGATCGCGCTCCAGGCACAACCGAGCGCGGCCCTCGGA
ACGGAACGCTATTGCTATTCTTGA
back to top
Synonyms
Publications