jgi.p|Nanoce1779_2|609128, mRNA_9552 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609128
Unique Name	mRNA_9552
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3463
Alignment location	scaffold_44:72515..75977 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	609214
Track	FilteredModels2
ProteinId	609128

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:72515..75977 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609128	gene_9552	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609128	mRNA_9552-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9552	CDS_9552	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:72515..75977+
coding sequence from alignment at scaffold_44:72515..75977+

mRNA sequence

>mRNA_9552 ID=mRNA_9552|Name=jgi.p|Nanoce1779_2|609128|organism=Nannochloropsis oceanica|type=mRNA|length=3463bp
CAGGGACACGTCAGGCCCTTCACCCAGCAGCAGGTTATACAAGGTAGCTT
TTCGTTCTCCTTGACGCCTCGTCCCAACCCGGCCCGTGCAAGTGTCCGCC
TCTTACGACCCCTCTGTCAACATATTTTCGCAAGCATAGCTCAATAGACC
TGCAGCGCTAAGTAAAAAGTACACAAATCAGATATATCATGTCTCCTACA
AGCAGTTCTGTCACCCTGGTCATGAGGAGCAGCGGCAGCAACAGAAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCA
ACAGCGGAAGGAAAAGGAAAGCCCCCCGCTGTCTCACCACCACCACGGCA
GCAGCAGCGGCCGTGGGGCTGCTCTGTATGGCTAGCGCACCGCAAGGTGT
GTTGTCTTTCGCACCTGCGGCATTCGGTCCTCACGCCACCAGCAGCAGCA
CGGCGAGAATACATGCCTTCTCTTCTTCTTCTTTCAACGCTTATCTTGAC
AGAAGCAGCAGCAGGCCGCACCCTTTCTCGCAGCCACAACAACTATCCAT
AGTTCCCTTGCAAGCCGGGAAGACTGACGGAGGGAGTAACAACGCCAAAG
TACGGGCTTTCGACCCTTTGGCCATGGTGGGGGAAAAGAAAAAAAGCAGC
ACCAGCACGGCACTGCTAGAAAAAGGGAGCAAAGATGTCGTTACTGAAGC
AGCAGGGGGAGGTCTGGTTGACGAAGAGGAGGAAAAGCCTGACAATGGCA
TATACAAGGCGATGCTTGTAGTGGTAGCCCTCTTATGGGGATCTAATTTC
GGGGCTCTTAAATACCTCGACACTTGCGGGGTGGACGTCTCGCTGCTCAC
TGCCATGCGGTTCGCCCTGGCTTCGGGCGCGTTACTCCCTTTCCTGTGGG
GGAAAGGTATGCCTGTCTTCAAAGCCGGCCTTGAGGTCGGGTTGTGGGTT
ACCCTTGGATACATTACACAGGCTATCGGCCTCGAGACCACTGAGGCGTC
CAAGTCAGCTTTTATCTGCTCCCTGACCGTGGTGGTAGTCCCCCTCATCC
AGGGCTTGCTGGGCAAGAAAGTCATGCCCACAACATGGGGTGCTTGCGCA
CTGGCCGTCTTTGGGGTGGGGTTGTTGACGTTACAGGGGGCCACGGGACC
GGTTATAGGGGACTTATGGTCGTTAGGACAGCCGTTGGGGTTTGGAATTG
CATTTATGCGGATCGAACATTACATGAAGCAACTGCCAGGGAAGGCTATC
CCGTTGGCAGCAGCCCAAATGGTGTCGGTGTTCGGGATCTCCACCATATG
GGCGGCGATAACGACGCAGGGGTTTACCAACACCGGGGATTTGTCGATTT
TGTCCGATACGCCCCATTTCTTGTCCTTGCTGTACACGGGCCTGATCTCT
TCGGCCTTGGCGGTGGTGATTGAGAGTGCAGCGCTGGAGTACGTGTCGAG
TGAAGAGACGTCGGTGATATTTTCGACCGAGCCGTTGTTCGCGGCGGCAA
CGTCGGCGGTGGTTTTGGGGGAGAGGCTGAAACCGACCGGCATGCTGGGA
GGGCTGGCGATTTTGGGGGCTTGCTTATTGACACAGGTGGATATGACGAC
TTTGGTGACGGTGTTGCCCATGCTGGGGAAGGCGGCAGATGTGAGCGAGC
AGGTAAATGAATGAAATTGGACTCGGCTATCGAGATAAATCAGGATTAAT
TTAGTTTCTAGGGTGGAGAAGAGAGAGGCAGGGAGAAATAGACGTCTGTA
AGAGTGCGGAGTCGAATGGAAAATCTGGTATTAAGAGGAAGACAAAGGAG
AGAGACAGTGGAAAAAAGTGAGAGAGTATGTGAGTGGATAACGATTGGGA
AATGATAGAAGATGAGTGCTGACCAAGAGGGAGCAAAAATAAAACCCATG
CGAAGAAGCTAGCATGTGTCCCTTCCCATCCCCGAGCTTTGCGAAGGGAT
ATTGGGAGAGGAGAGAGGGAGAGGAGGAATGGAAGGGGGGGAGGGGCGGT
TTAACTCTCTCCCGTGTAATGATGTCGTAAGTGCCCCAGCCATACAAGCG
TGCAGCGACGATTTAGGGAAGGGGCTTAATACTCTATTATATAGGTGAAA
AAGGATGAGTGGGAAAGAGACACAAATGACGAGAGGCATAGGGAGGGTTG
AGATATTATTAGAAAGCGAAAATGGGAAGGAGATCGAGTCAAGGAAGAAG
ACGCATTCATGTTGTGTTAATGTATTTTTCTTCTTCTTCTCTCACTCATC
TCAGCACCGCCACGCTACACCCCGCGCACTGACCTCGAGAAAGAAAGCAG
AGTTCACCTCCAGAGCTAGAACCTGAGATGAGATAAGAAGGAAAACAAGG
AGAGAGGAAGAGGGAAGGAAAAGTCGAACGGGCGATGTCCAATAAGGGAC
AACCGTCTAACTCAAAAAGACCGAAAAGTGATAGGTGCAACGTGAATTCA
TGAATTCATGCCTTTCCTTTTATAGGCCCTGCCCTATTCTTTTCCCCTGT
TCCATTTTCCTCCCGATTTTATCTTCATCACTAGACAGCATTCCTCCAAT
TTCCAATTTTCTCCTGCTCTTTTCCCTTTAAATCTCTCTGACGTAGACGC
CGCATTCTTTCCCTCCCCTTGGAATGTTTAGCGCTATTTGACTGTCAGAC
CGTGCATATGGAATAATAATGAAGGGAAGAGATGTGTTGATCAATCCAAC
CTGTGAAAAAAAAGTATGCAAGTACACTGAAATCGCTATTCTCCTATCCT
GCTTTTATACACACATACACACACTACACACACACTACACACACACTGCT
CCTCACATCCCTCGTTCTCCCCCATGCCATGTGATATTCAAGTATACCAT
GCGTTAAAAAATCAGGGAACTTTGAAGGCTAGCTGTAAAAAACTCGCAAA
TGATGCGGCAGTGTGCAAAGACACTGTCGGCATCGTCTAGAGTCAGCAAT
GTAATTGTCATCAACTTTTTCTTGGGGCAAAAGGGGCGGGAGGCAACGAA
AAAAGGGAAGGAGAAAGAAGGGGAGGACCTGAGACGCAGAAAAGGAGACA
CGACACAGAGAAGGAGGCGGGTTTGAACGAGTCCTGGTGCCGCTCCGTCG
GATAACAGTTTACCTTTGTAAGGATCGAGCCGTGGCTGTAGCTGTCGCAG
GTGCTTTGGCCAAGAACTATCTATGCTTATGTGTGGTGGAGGAATGTATG
ACGTTGTCAATGCCTGCTGCTCATTTTTTCCATGTAAATACAAAAGGAGG
CAGAAATTAGGAGAGGAGGGGGGTTGCAAAGTAGGCTCAGACAACAAGTT
CTTCTCATCTACGCTGTCAGGCGCAGTATAGAGCAGGTAAAACGGCGTAT
GTTGATATGAATACATCACGGCCTTTGCATTTCGAGGGTGAAGGAATTTC
TACTGCCTTGTCTCTCCTCTCTTCTGTTGAGCGTCCTTACCTTAGATGTG
ATGCTTGTATAGC

protein sequence of jgi.p|Nanoce1779_2|609128

>mRNA_9552-protein ID=mRNA_9552-protein|Name=jgi.p|Nanoce1779_2|609128|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MSPTSSSVTLVMRSSGSNRSSSSSSSSSSSSSSSNSSNSGRKRKAPRCLT
TTTAAAAAVGLLCMASAPQGVLSFAPAAFGPHATSSSTARIHAFSSSSFN
AYLDRSSSRPHPFSQPQQLSIVPLQAGKTDGGSNNAKVRAFDPLAMVGEK
KKSSTSTALLEKGSKDVVTEAAGGGLVDEEEEKPDNGIYKAMLVVVALLW
GSNFGALKYLDTCGVDVSLLTAMRFALASGALLPFLWGKGMPVFKAGLEV
GLWVTLGYITQAIGLETTEASKSAFICSLTVVVVPLIQGLLGKKVMPTTW
GACALAVFGVGLLTLQGATGPVIGDLWSLGQPLGFGIAFMRIEHYMKQLP
GKAIPLAAAQMVSVFGISTIWAAITTQGFTNTGDLSILSDTPHFLSLLYT
GLISSALAVVIESAALEYVSSEETSVIFSTEPLFAAATSAVVLGERLKPT
GMLGGLAILGACLLTQVDMTTLVTVLPMLGKAADVSEQVNE*

mRNA from alignment at scaffold_44:72515..75977+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9552 ID=mRNA_9552|Name=jgi.p|Nanoce1779_2|609128|organism=Nannochloropsis oceanica|type=mRNA|length=3463bp|location=Sequence derived from alignment at scaffold_44:72515..75977+ (Nannochloropsis oceanica)
CAGGGACACGTCAGGCCCTTCACCCAGCAGCAGGTTATACAAGGTAGCTT
TTCGTTCTCCTTGACGCCTCGTCCCAACCCGGCCCGTGCAAGTGTCCGCC
TCTTACGACCCCTCTGTCAACATATTTTCGCAAGCATAGCTCAATAGACC
TGCAGCGCTAAGTAAAAAGTACACAAATCAGATATATCATGTCTCCTACA
AGCAGTTCTGTCACCCTGGTCATGAGGAGCAGCGGCAGCAACAGAAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCA
ACAGCGGAAGGAAAAGGAAAGCCCCCCGCTGTCTCACCACCACCACGGCA
GCAGCAGCGGCCGTGGGGCTGCTCTGTATGGCTAGCGCACCGCAAGGTGT
GTTGTCTTTCGCACCTGCGGCATTCGGTCCTCACGCCACCAGCAGCAGCA
CGGCGAGAATACATGCCTTCTCTTCTTCTTCTTTCAACGCTTATCTTGAC
AGAAGCAGCAGCAGGCCGCACCCTTTCTCGCAGCCACAACAACTATCCAT
AGTTCCCTTGCAAGCCGGGAAGACTGACGGAGGGAGTAACAACGCCAAAG
TACGGGCTTTCGACCCTTTGGCCATGGTGGGGGAAAAGAAAAAAAGCAGC
ACCAGCACGGCACTGCTAGAAAAAGGGAGCAAAGATGTCGTTACTGAAGC
AGCAGGGGGAGGTCTGGTTGACGAAGAGGAGGAAAAGCCTGACAATGGCA
TATACAAGGCGATGCTTGTAGTGGTAGCCCTCTTATGGGGATCTAATTTC
GGGGCTCTTAAATACCTCGACACTTGCGGGGTGGACGTCTCGCTGCTCAC
TGCCATGCGGTTCGCCCTGGCTTCGGGCGCGTTACTCCCTTTCCTGTGGG
GGAAAGGTATGCCTGTCTTCAAAGCCGGCCTTGAGGTCGGGTTGTGGGTT
ACCCTTGGATACATTACACAGGCTATCGGCCTCGAGACCACTGAGGCGTC
CAAGTCAGCTTTTATCTGCTCCCTGACCGTGGTGGTAGTCCCCCTCATCC
AGGGCTTGCTGGGCAAGAAAGTCATGCCCACAACATGGGGTGCTTGCGCA
CTGGCCGTCTTTGGGGTGGGGTTGTTGACGTTACAGGGGGCCACGGGACC
GGTTATAGGGGACTTATGGTCGTTAGGACAGCCGTTGGGGTTTGGAATTG
CATTTATGCGGATCGAACATTACATGAAGCAACTGCCAGGGAAGGCTATC
CCGTTGGCAGCAGCCCAAATGGTGTCGGTGTTCGGGATCTCCACCATATG
GGCGGCGATAACGACGCAGGGGTTTACCAACACCGGGGATTTGTCGATTT
TGTCCGATACGCCCCATTTCTTGTCCTTGCTGTACACGGGCCTGATCTCT
TCGGCCTTGGCGGTGGTGATTGAGAGTGCAGCGCTGGAGTACGTGTCGAG
TGAAGAGACGTCGGTGATATTTTCGACCGAGCCGTTGTTCGCGGCGGCAA
CGTCGGCGGTGGTTTTGGGGGAGAGGCTGAAACCGACCGGCATGCTGGGA
GGGCTGGCGATTTTGGGGGCTTGCTTATTGACACAGGTGGATATGACGAC
TTTGGTGACGGTGTTGCCCATGCTGGGGAAGGCGGCAGATGTGAGCGAGC
AGGTAAATGAATGAAATTGGACTCGGCTATCGAGATAAATCAGGATTAAT
TTAGTTTCTAGGGTGGAGAAGAGAGAGGCAGGGAGAAATAGACGTCTGTA
AGAGTGCGGAGTCGAATGGAAAATCTGGTATTAAGAGGAAGACAAAGGAG
AGAGACAGTGGAAAAAAGTGAGAGAGTATGTGAGTGGATAACGATTGGGA
AATGATAGAAGATGAGTGCTGACCAAGAGGGAGCAAAAATAAAACCCATG
CGAAGAAGCTAGCATGTGTCCCTTCCCATCCCCGAGCTTTGCGAAGGGAT
ATTGGGAGAGGAGAGAGGGAGAGGAGGAATGGAAGGGGGGGAGGGGCGGT
TTAACTCTCTCCCGTGTAATGATGTCGTAAGTGCCCCAGCCATACAAGCG
TGCAGCGACGATTTAGGGAAGGGGCTTAATACTCTATTATATAGGTGAAA
AAGGATGAGTGGGAAAGAGACACAAATGACGAGAGGCATAGGGAGGGTTG
AGATATTATTAGAAAGCGAAAATGGGAAGGAGATCGAGTCAAGGAAGAAG
ACGCATTCATGTTGTGTTAATGTATTTTTCTTCTTCTTCTCTCACTCATC
TCAGCACCGCCACGCTACACCCCGCGCACTGACCTCGAGAAAGAAAGCAG
AGTTCACCTCCAGAGCTAGAACCTGAGATGAGATAAGAAGGAAAACAAGG
AGAGAGGAAGAGGGAAGGAAAAGTCGAACGGGCGATGTCCAATAAGGGAC
AACCGTCTAACTCAAAAAGACCGAAAAGTGATAGGTGCAACGTGAATTCA
TGAATTCATGCCTTTCCTTTTATAGGCCCTGCCCTATTCTTTTCCCCTGT
TCCATTTTCCTCCCGATTTTATCTTCATCACTAGACAGCATTCCTCCAAT
TTCCAATTTTCTCCTGCTCTTTTCCCTTTAAATCTCTCTGACGTAGACGC
CGCATTCTTTCCCTCCCCTTGGAATGTTTAGCGCTATTTGACTGTCAGAC
CGTGCATATGGAATAATAATGAAGGGAAGAGATGTGTTGATCAATCCAAC
CTGTGAAAAAAAAGTATGCAAGTACACTGAAATCGCTATTCTCCTATCCT
GCTTTTATACACACATACACACACTACACACACACTACACACACACTGCT
CCTCACATCCCTCGTTCTCCCCCATGCCATGTGATATTCAAGTATACCAT
GCGTTAAAAAATCAGGGAACTTTGAAGGCTAGCTGTAAAAAACTCGCAAA
TGATGCGGCAGTGTGCAAAGACACTGTCGGCATCGTCTAGAGTCAGCAAT
GTAATTGTCATCAACTTTTTCTTGGGGCAAAAGGGGCGGGAGGCAACGAA
AAAAGGGAAGGAGAAAGAAGGGGAGGACCTGAGACGCAGAAAAGGAGACA
CGACACAGAGAAGGAGGCGGGTTTGAACGAGTCCTGGTGCCGCTCCGTCG
GATAACAGTTTACCTTTGTAAGGATCGAGCCGTGGCTGTAGCTGTCGCAG
GTGCTTTGGCCAAGAACTATCTATGCTTATGTGTGGTGGAGGAATGTATG
ACGTTGTCAATGCCTGCTGCTCATTTTTTCCATGTAAATACAAAAGGAGG
CAGAAATTAGGAGAGGAGGGGGGTTGCAAAGTAGGCTCAGACAACAAGTT
CTTCTCATCTACGCTGTCAGGCGCAGTATAGAGCAGGTAAAACGGCGTAT
GTTGATATGAATACATCACGGCCTTTGCATTTCGAGGGTGAAGGAATTTC
TACTGCCTTGTCTCTCCTCTCTTCTGTTGAGCGTCCTTACCTTAGATGTG
ATGCTTGTATAGC

Coding sequence (CDS) from alignment at scaffold_44:72515..75977+

>mRNA_9552 ID=mRNA_9552|Name=jgi.p|Nanoce1779_2|609128|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_44:72515..75977+ (Nannochloropsis oceanica)
ATGTCTCCTACAAGCAGTTCTGTCACCCTGGTCATGAGGAGCAGCGGCAG
CAACAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAACAGCAGCAACAGCGGAAGGAAAAGGAAAGCCCCCCGCTGTCTCACC
ACCACCACGGCAGCAGCAGCGGCCGTGGGGCTGCTCTGTATGGCTAGCGC
ACCGCAAGGTGTGTTGTCTTTCGCACCTGCGGCATTCGGTCCTCACGCCA
CCAGCAGCAGCACGGCGAGAATACATGCCTTCTCTTCTTCTTCTTTCAAC
GCTTATCTTGACAGAAGCAGCAGCAGGCCGCACCCTTTCTCGCAGCCACA
ACAACTATCCATAGTTCCCTTGCAAGCCGGGAAGACTGACGGAGGGAGTA
ACAACGCCAAAGTACGGGCTTTCGACCCTTTGGCCATGGTGGGGGAAAAG
AAAAAAAGCAGCACCAGCACGGCACTGCTAGAAAAAGGGAGCAAAGATGT
CGTTACTGAAGCAGCAGGGGGAGGTCTGGTTGACGAAGAGGAGGAAAAGC
CTGACAATGGCATATACAAGGCGATGCTTGTAGTGGTAGCCCTCTTATGG
GGATCTAATTTCGGGGCTCTTAAATACCTCGACACTTGCGGGGTGGACGT
CTCGCTGCTCACTGCCATGCGGTTCGCCCTGGCTTCGGGCGCGTTACTCC
CTTTCCTGTGGGGGAAAGGTATGCCTGTCTTCAAAGCCGGCCTTGAGGTC
GGGTTGTGGGTTACCCTTGGATACATTACACAGGCTATCGGCCTCGAGAC
CACTGAGGCGTCCAAGTCAGCTTTTATCTGCTCCCTGACCGTGGTGGTAG
TCCCCCTCATCCAGGGCTTGCTGGGCAAGAAAGTCATGCCCACAACATGG
GGTGCTTGCGCACTGGCCGTCTTTGGGGTGGGGTTGTTGACGTTACAGGG
GGCCACGGGACCGGTTATAGGGGACTTATGGTCGTTAGGACAGCCGTTGG
GGTTTGGAATTGCATTTATGCGGATCGAACATTACATGAAGCAACTGCCA
GGGAAGGCTATCCCGTTGGCAGCAGCCCAAATGGTGTCGGTGTTCGGGAT
CTCCACCATATGGGCGGCGATAACGACGCAGGGGTTTACCAACACCGGGG
ATTTGTCGATTTTGTCCGATACGCCCCATTTCTTGTCCTTGCTGTACACG
GGCCTGATCTCTTCGGCCTTGGCGGTGGTGATTGAGAGTGCAGCGCTGGA
GTACGTGTCGAGTGAAGAGACGTCGGTGATATTTTCGACCGAGCCGTTGT
TCGCGGCGGCAACGTCGGCGGTGGTTTTGGGGGAGAGGCTGAAACCGACC
GGCATGCTGGGAGGGCTGGCGATTTTGGGGGCTTGCTTATTGACACAGGT
GGATATGACGACTTTGGTGACGGTGTTGCCCATGCTGGGGAAGGCGGCAG
ATGTGAGCGAGCAGGTAAATGAATGA

Synonyms

Publications