jgi.p|Nanoce1779_2|312397, mRNA_9550 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|312397
Unique Name	mRNA_9550
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1933
Alignment location	scaffold_44:66685..68787 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	312483
Track	FilteredModels2
ProteinId	312397

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:66685..68787 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|312397	gene_9550	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|312397	mRNA_9550-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9550	CDS_9550	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:66685..68787+
coding sequence from alignment at scaffold_44:66685..68787+

mRNA sequence

>mRNA_9550 ID=mRNA_9550|Name=jgi.p|Nanoce1779_2|312397|organism=Nannochloropsis oceanica|type=mRNA|length=1933bp
CCATTCCACACACAGAGAGATAAGCTCAAGGATAAGCTTGTGGTAAACAT
TGCGGGGTATTAGGAGGTTGCTCACTCCGTCGCTCGCAATAGCATGGCCG
GGGAAGGGGAGGAGGAAGACACTGCCGCTTCTCCCGCGGCGGTCGACCAA
CGAGAATCAGGAAGCCTTTTGGCGCGCTTGCTCCGACAGCTCCGCACCGT
CTCCGTCCGCAATCTAGCCGTCAGCCATGACAACGACGATGGACGTCCTT
GCCTCCCACCTTCGACATACGTCCAAATACTGGCCCGGCAGCCGCCCTCC
TCCTCTTCCGCCACCACTACTACTAGACCACCATTCCGCGTCTACTATAC
AAGCGAGGTGGCTCCCTACACGCACAACCCCATCTGGCTTGTTCTAGACC
TAGAACCTTTAGAGAACGACGACATGAATAACGGCGACGAGGGCGAGTAC
GAAGAATGGGAGCAGGAAGGGGGAGAGGAAGGCTCGATAGAACCCAGCCT
CTCCGGGGAAGAAATCTGCATCCGCGTCTTTCTTGCGACCCCGACCGACG
ACGACAATGTCGGAGAGATAAACCGGTCTTCCGATCTCATAACCACCATA
ACCACCAAACAACGAGGAAGGAGAAGGAGAGCCGCACCTCATCTTGGACG
ACTCCAACGTGGACACCATCCCTCCATCACCCCTTCTCCTCCCCTCGCCA
CCTTCCTCTTCCACCTCCCCCGCCTCTGGTGCCTACCCCCTACCGTCAAA
CTATCACAGTTGCACCTGCCTGCTTTTCCGGCTACGTGTTTGTTGGCCAC
GGGGGAGGGTGGGACAGGGCTGTTGGTGGAGGAAGGGGTGGGGGAAGCGT
TGGGGTTGGAATTGAATGGAGGAAGGAGAGGGGATGCACCGCATTTGCTC
GATGAGCAGTACGTGGAGGAGCTGGAAGAGTACCAGCGCCGTCCTCCCTT
CGCTTCTTTCTCCTCCTTGTCCAGTAAGACACCGAATGGGGCGATGCGCA
AGCTGACCTTGGCATCGCCTTCTTCCTCTTCGTCCTGCTCCTCCTCCCAA
AAACGAGAGGAGGAATCAATAACAAATTACCGTGCTGAACAAGCCAAATT
ACAAGCCATGCTTCAAATAAAGCGTCTGGAGCTCGCGAGAGAAGAAAGAG
CACTAGCAGAGGAAGAAGAGGGATTAATGGAGGAAGGCCGCGTGCTTCAC
GCCCTAATGAAACGTCACGCATCCCTAGTCATAGAAGCGGCCAAGATAGA
GAAAGAAACGATGGATGTGGAGGAAGTCTTAATTCAGAAAGAATTTGTGG
TGGCGTTACGGCAACGAAAGCTGGTAGAAGAGCTTCAGAGAATTTATCCC
ATTGAACGCAGGAGTGGTGAGCAAGAATATCGCATTCGGGGATTGGAGTT
GCCTGCAGACACAGTGAACACGACGAGGGACGATGACCTCATCGCGTCTG
CATTGGGGTATGTGTGTCATGTGCTTGTGATGCTGTCCAAGTACTTAGAG
GTTCCATTACGGTATGCTCTTGAATGTCGGTCTTCCCGATCCCTCATCCA
GGATGCCACCGTTGCGTACGCGGTGTTCCCTCTGTATAAACGAGGGGTGG
AACGAGAGCGGTTCGAATGGGCGGTGTACTTATTGAAGAAAAATATTCAG
CAGCTCTTGTGCGCGCGAGGCGTGTCCCGGATGCTGCTCCCGGGGGAAAG
AGAAGCAAGTGGAGGGGGAGGAGGAGGAGGAGGAAGTGGCGGCTTGTTCC
GAGAGCCACCATACTGTTCGCATATTCTCCAAAATTTACAGGCACTTTTC
ATTCACGAACTGGCTTCATCCTCCACAACCCTGTAAAGTATTGTAGATCG
CACGGGCACATTTTTAAATGGCTTGAGGAAACGAAATAAAAGGAAAACTT
AAAATGGGAAAAGAAGGAAAGCCAGCAACGAAC

protein sequence of jgi.p|Nanoce1779_2|312397

>mRNA_9550-protein ID=mRNA_9550-protein|Name=jgi.p|Nanoce1779_2|312397|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MAGEGEEEDTAASPAAVDQRESGSLLARLLRQLRTVSVRNLAVSHDNDDG
RPCLPPSTYVQILARQPPSSSSATTTTRPPFRVYYTSEVAPYTHNPIWLV
LDLEPLENDDMNNGDEGEYEEWEQEGGEEGSIEPSLSGEEICIRVFLATP
TDDDNVGEINRSSDLITTITTKQRGRRRRAAPHLGRLQRGHHPSITPSPP
LATFLFHLPRLWCLPPTVKLSQLHLPAFPATCLLATGEGGTGLLVEEGVG
EALGLELNGGRRGDAPHLLDEQYVEELEEYQRRPPFASFSSLSSKTPNGA
MRKLTLASPSSSSSCSSSQKREEESITNYRAEQAKLQAMLQIKRLELARE
ERALAEEEEGLMEEGRVLHALMKRHASLVIEAAKIEKETMDVEEVLIQKE
FVVALRQRKLVEELQRIYPIERRSGEQEYRIRGLELPADTVNTTRDDDLI
ASALGYVCHVLVMLSKYLEVPLRYALECRSSRSLIQDATVAYAVFPLYKR
GVERERFEWAVYLLKKNIQQLLCARGVSRMLLPGEREASGGGGGGGGSGG
LFREPPYCSHILQNLQALFIHELASSSTTL*

mRNA from alignment at scaffold_44:66685..68787+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9550 ID=mRNA_9550|Name=jgi.p|Nanoce1779_2|312397|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp|location=Sequence derived from alignment at scaffold_44:66685..68787+ (Nannochloropsis oceanica)
CCATTCCACACACAGAGAGATAAGCTCAAGGATAAGCTTGTGGTAAACAT
TGCGGGGTATTAGGAGGTTGCTCACTCCGTCGCTCGCAATAGCATGGCCG
GGGAAGGGGAGGAGGAAGACACTGCCGCTTCTCCCGCGGCGGTCGACCAA
CGAGAATCAGGAAGCCTTTTGGCGGTGCGTATAAAGCCTTATTTTTTTAG
AATAAGGGAATCATGCCCATAAGACGCAGTGTCCTGACGCGTTGCTGTTG
GTGGGAGCCCACTTCATTCTTTGAGAAAGCTAAGCCCGTCGGCACCCTCC
GCCCTACAACACCCTCACCTCCCCCCTCATCTTCCCAATCACAGCGCTTG
CTCCGACAGCTCCGCACCGTCTCCGTCCGCAATCTAGCCGTCAGCCATGA
CAACGACGATGGACGTCCTTGCCTCCCACCTTCGACATACGTCCAAATAC
TGGCCCGGCAGCCGCCCTCCTCCTCTTCCGCCACCACTACTACTAGACCA
CCATTCCGCGTCTACTATACAAGCGAGGTGGCTCCCTACACGCACAACCC
CATCTGGCTTGTTCTAGACCTAGAACCTTTAGAGAACGACGACATGAATA
ACGGCGACGAGGGCGAGTACGAAGAATGGGAGCAGGAAGGGGGAGAGGAA
GGCTCGATAGAACCCAGCCTCTCCGGGGAAGAAATCTGCATCCGCGTCTT
TCTTGCGACCCCGACCGACGACGACAATGTCGGAGAGATAAACCGGTCTT
CCGATCTCATAACCACCATAACCACCAAACAACGAGGAAGGAGAAGGAGA
GCCGCACCTCATCTTGGACGACTCCAACGTGGACACCATCCCTCCATCAC
CCCTTCTCCTCCCCTCGCCACCTTCCTCTTCCACCTCCCCCGCCTCTGGT
GCCTACCCCCTACCGTCAAACTATCACAGTTGCACCTGCCTGCTTTTCCG
GCTACGTGTTTGTTGGCCACGGGGGAGGGTGGGACAGGGCTGTTGGTGGA
GGAAGGGGTGGGGGAAGCGTTGGGGTTGGAATTGAATGGAGGAAGGAGAG
GGGATGCACCGCATTTGCTCGATGAGCAGTACGTGGAGGAGCTGGAAGAG
TACCAGCGCCGTCCTCCCTTCGCTTCTTTCTCCTCCTTGTCCAGTAAGAC
ACCGAATGGGGCGATGCGCAAGCTGACCTTGGCATCGCCTTCTTCCTCTT
CGTCCTGCTCCTCCTCCCAAAAACGAGAGGAGGAATCAATAACAAATTAC
CGTGCTGAACAAGCCAAATTACAAGCCATGCTTCAAATAAAGCGTCTGGA
GCTCGCGAGAGAAGAAAGAGCACTAGCAGAGGAAGAAGAGGGATTAATGG
AGGAAGGCCGCGTGCTTCACGCCCTAATGAAACGTCACGCATCCCTAGTC
ATAGAAGCGGCCAAGATAGAGAAAGAAACGATGGATGTGGAGGAAGTCTT
AATTCAGAAAGAATTTGTGGTGGCGTTACGGCAACGAAAGCTGGTAGAAG
AGCTTCAGAGAATTTATCCCATTGAACGCAGGAGTGGTGAGCAAGAATAT
CGCATTCGGGGATTGGAGTTGCCTGCAGACACAGTGAACACGACGAGGGA
CGATGACCTCATCGCGTCTGCATTGGGGTATGTGTGTCATGTGCTTGTGA
TGCTGTCCAAGTACTTAGAGGTTCCATTACGGTATGCTCTTGAATGTCGG
TCTTCCCGATCCCTCATCCAGGATGCCACCGTTGCGTACGCGGTGTTCCC
TCTGTATAAACGAGGGGTGGAACGAGAGCGGTTCGAATGGGCGGTGTACT
TATTGAAGAAAAATATTCAGCAGCTCTTGTGCGCGCGAGGCGTGTCCCGG
ATGCTGCTCCCGGGGGAAAGAGAAGCAAGTGGAGGGGGAGGAGGAGGAGG
AGGAAGTGGCGGCTTGTTCCGAGAGCCACCATACTGTTCGCATATTCTCC
AAAATTTACAGGCACTTTTCATTCACGAACTGGCTTCATCCTCCACAACC
CTGTAAAGTATTGTAGATCGCACGGGCACATTTTTAAATGGCTTGAGGAA
ACGAAATAAAAGGAAAACTTAAAATGGGAAAAGAAGGAAAGCCAGCAACG
AAC

Coding sequence (CDS) from alignment at scaffold_44:66685..68787+

>mRNA_9550 ID=mRNA_9550|Name=jgi.p|Nanoce1779_2|312397|organism=Nannochloropsis oceanica|type=CDS|length=3486bp|location=Sequence derived from alignment at scaffold_44:66685..68787+ (Nannochloropsis oceanica)
ATGGCCGGGGAAGGGGAGGAGGAAGACACTGCCGCTTCTCCCGCGGCGGT
CGACCAACGAGAATCAGGAAGCCTTTTGGCGCGCTTGCTCCGACAGCTCC
GCACCGTCTCCGTCCGCAATCTAGCCGTCAGCCATGACAACGACGATGGA
CGTCCTTGCCTCCCACCTTCGACATACGTCCAAATACTGGCCCGGCAGCC
GCCCTCCTCCTCTTCCGCCACCACTACTACTAGACCACCATTCCGCGTCT
ACTATACAAGCGAGGTGGCTCCCTACACGCACAACCCCATCTGGCTTGTT
CTAGACCTAGAACCTTTAGAGAACGACGACATGAATAACGGCGACGAGGG
CGAGTACGAAGAATGGGAGCAGGAAGGGGGAGAGGAAGGCTCGATAGAAC
CCAGCCTCTCCGGGGAAGAAATCTGCATCCGCGTCTTTCTTGCGACCCCG
ACCGACGACGACAATGTCGGAGAGATAAACCGGTCTTCCGATCTCATAAC
CACCATAACCACCAAACAACGAGGAAGGAGAAGGAGAGCCGCACCTCATC
TTGGACGACTCCAACGTGGACACCATCCCTCCATCACCCCTTCTCCTCCC
CTCGCCACCTTCCTCTTCCACCTCCCCCGCCTCTGGTGCCTACCCCCTAC
CGTCAAACTATCACAGTTGCACCTGCCTGCTTTTCCGGCTACGTGTTTGT
TGGCCACGGGGGAGGGTGGGACAGGGCTGTTGGTGGAGGAAGGGGTGGGG
GAAGCGTTGGGGTTGGAATTGAATGGAGGAAGGAGAGGGGATGCACCGCA
TTTGCTCGATGAGCAGTACGTGGAGGAGCTGGAAGAGTACCAGCGCCGTC
CTCCCTTCGCTTCTTTCTCCTCCTTGTCCAGTAAGACACCGAATGGGGCG
ATGCGCAAGCTGACCTTGGCATCGCCTTCTTCCTCTTCGTCCTGCTCCTC
CTCCCAAAAACGAGAGGAGGAATCAATAACAAATTACCGTGCTGAACAAG
CCAAATTACAAGCCATGCTTCAAATAAAGCGTCTGGAGCTCGCGAGAGAA
GAAAGAGCACTAGCAGAGGAAGAAGAGGGATTAATGGAGGAAGGCCGCGT
GCTTCACGCCCTAATGAAACGTCACGCATCCCTAGTCATAGAAGCGGCCA
AGATAGAGAAAGAAACGATGGATGTGGAGGAAGTCTTAATTCAGAAAGAA
TTTGTGGTGGCGTTACGGCAACGAAAGCTGGTAGAAGAGCTTCAGAGAAT
TTATCCCATTGAACGCAGGAGTGGTGAGCAAGAATATCGCATTCGGGGAT
TGGAGTTGCCTGCAGACACAGTGAACACGACGAGGGACGATGACCTCATC
GCGTCTGCATTGGGGTATGTGTGTCATGTGCTTGTGATGCTGTCCAAGTA
CTTAGAGGTTCCATTACGGTATGCTCTTGAATGTCGGTCTTCCCGATCCC
TCATCCAGGATGCCACCGTTGCGTACGCGGTGTTCCCTCTGTATAAACGA
GGGGTGGAACGAGAGCGGTTCGAATGGGCGGTGTACTTATTGAAGAAAAA
TATTCAGCAGCTCTTGTGCGCGCGAGGCGTGTCCCGGATGCTGCTCCCGG
GGGAAAGAGAAGCAAGTGGAGGGGGAGGAGGAGGAGGAGGAAGTGGCGGC
TTGTTCCGAGAGCCACCATACTGTTCGCATATTCTCCAAAATTTACAGGC
ACTTTTCATTCACGAACTGGCTTCATCCTCCACAACCCTGTAAATGGCCG
GGGAAGGGGAGGAGGAAGACACTGCCGCTTCTCCCGCGGCGGTCGACCAA
CGAGAATCAGGAAGCCTTTTGGCGCGCTTGCTCCGACAGCTCCGCACCGT
CTCCGTCCGCAATCTAGCCGTCAGCCATGACAACGACGATGGACGTCCTT
GCCTCCCACCTTCGACATACGTCCAAATACTGGCCCGGCAGCCGCCCTCC
TCCTCTTCCGCCACCACTACTACTAGACCACCATTCCGCGTCTACTATAC
AAGCGAGGTGGCTCCCTACACGCACAACCCCATCTGGCTTGTTCTAGACC
TAGAACCTTTAGAGAACGACGACATGAATAACGGCGACGAGGGCGAGTAC
GAAGAATGGGAGCAGGAAGGGGGAGAGGAAGGCTCGATAGAACCCAGCCT
CTCCGGGGAAGAAATCTGCATCCGCGTCTTTCTTGCGACCCCGACCGACG
ACGACAATGTCGGAGAGATAAACCGGTCTTCCGATCTCATAACCACCATA
ACCACCAAACAACGAGGAAGGAGAAGGAGAGCCGCACCTCATCTTGGACG
ACTCCAACGTGGACACCATCCCTCCATCACCCCTTCTCCTCCCCTCGCCA
CCTTCCTCTTCCACCTCCCCCGCCTCTGGTGCCTACCCCCTACCGTCAAA
CTATCACAGTTGCACCTGCCTGCTTTTCCGGCTACGTGTTTGTTGGCCAC
GGGGGAGGGTGGGACAGGGCTGTTGGTGGAGGAAGGGGTGGGGGAAGCGT
TGGGGTTGGAATTGAATGGAGGAAGGAGAGGGGATGCACCGCATTTGCTC
GATGAGCAGTACGTGGAGGAGCTGGAAGAGTACCAGCGCCGTCCTCCCTT
CGCTTCTTTCTCCTCCTTGTCCAGTAAGACACCGAATGGGGCGATGCGCA
AGCTGACCTTGGCATCGCCTTCTTCCTCTTCGTCCTGCTCCTCCTCCCAA
AAACGAGAGGAGGAATCAATAACAAATTACCGTGCTGAACAAGCCAAATT
ACAAGCCATGCTTCAAATAAAGCGTCTGGAGCTCGCGAGAGAAGAAAGAG
CACTAGCAGAGGAAGAAGAGGGATTAATGGAGGAAGGCCGCGTGCTTCAC
GCCCTAATGAAACGTCACGCATCCCTAGTCATAGAAGCGGCCAAGATAGA
GAAAGAAACGATGGATGTGGAGGAAGTCTTAATTCAGAAAGAATTTGTGG
TGGCGTTACGGCAACGAAAGCTGGTAGAAGAGCTTCAGAGAATTTATCCC
ATTGAACGCAGGAGTGGTGAGCAAGAATATCGCATTCGGGGATTGGAGTT
GCCTGCAGACACAGTGAACACGACGAGGGACGATGACCTCATCGCGTCTG
CATTGGGGTATGTGTGTCATGTGCTTGTGATGCTGTCCAAGTACTTAGAG
GTTCCATTACGGTATGCTCTTGAATGTCGGTCTTCCCGATCCCTCATCCA
GGATGCCACCGTTGCGTACGCGGTGTTCCCTCTGTATAAACGAGGGGTGG
AACGAGAGCGGTTCGAATGGGCGGTGTACTTATTGAAGAAAAATATTCAG
CAGCTCTTGTGCGCGCGAGGCGTGTCCCGGATGCTGCTCCCGGGGGAAAG
AGAAGCAAGTGGAGGGGGAGGAGGAGGAGGAGGAAGTGGCGGCTTGTTCC
GAGAGCCACCATACTGTTCGCATATTCTCCAAAATTTACAGGCACTTTTC
ATTCACGAACTGGCTTCATCCTCCACAACCCTGTAA

Synonyms

Publications