jgi.p|Nanoce1779_2|574792, mRNA_955 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574792
Unique Name	mRNA_955
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2594
Alignment location	scaffold_2:843983..846576 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574878
Track	FilteredModels2
ProteinId	574792

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:843983..846576 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574792	gene_955	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574792	mRNA_955-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_955	CDS_955	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:843983..846576-
coding sequence from alignment at scaffold_2:843983..846576-

mRNA sequence

>mRNA_955 ID=mRNA_955|Name=jgi.p|Nanoce1779_2|574792|organism=Nannochloropsis oceanica|type=mRNA|length=2594bp
ACAGCGCCCCAGGCACTCTTTCATCTTTTAGCCAGCGAGCAGCCATGGCG
TTTTGCATCCTTTCCACGAGCATCATCAAGAACACCAGCAGCGTACACAT
GTGCCGGCGGCACCAGAAAATCTATTCGTGACACCGGCTCTGCACATAGA
CAGTAGAAGCAGCAGTAGCAAGCCAGTGTACAGCAACAGTGTTTTCCTGT
TCGTGATAAAGCGCTGACAGCTTTAAGCAAGAAACATAATCTCTATTCAA
ATCAAGCAGCGCAGCACAACCAACCATCATCAACCGAGCCTTATATTCTG
TCGGAGGTGACATTATCAGCACCAGCAAACCAGCAGCAACAACCTTCAGC
GCTTCACAGAGCTCTTACACGCAATATATCTTACGGCGCTGTCATCACTG
TTGCTCCATTGAGCAACCTTCCTCCGAAAAGTAATGAAACACGCGCATTC
GCCTGTCGTCCCCTCTCTTGACCTGCTCGAGGAGCTACCGGCGCCACAAC
ATCCAATTGTTGAAGTGGTTCCACCCTGTCCTTTGATGCTCATCCGGCGG
TCCGGGATTGCCTCTCAGCCGATTAGCATGGGTGACGACAACAACAATGA
TAACAACATCATCAGCCTGGGGGAGATGGGCCATGACACGCCCTCGACAA
CCATGATCACGGCAGCAGCAACAGCAGCAGTGGCGGGCCTTGGCTATCCT
AAAGTCCTGCGAACCATGTCGGATTCATGTATTCCTCGCGCCCCCCGCAT
GTCTTCTTCAGAGCCCAACCCTCTCTTCTTGGAAAGGATCCCCCAACTTT
CTTTGCCCCCTCCTTCGGTGAAGAACGGCGGACACCTTGTCATGAACACT
GAGAAGTATGCCGGAGAAAAAGGAGGGCACAAATTGTCCTCATCCCTTAG
GGAGCGTATGGGGTCGCTGGCAACTAGTTTAATGCATTTTACGGCGACTT
CATGCCCTAGCTCTGTGGGCGATACCGCTCCAGTTGGTGAGTGGCAAGTC
GAATACGATGAAGAGACACGGCCCACGGTGGTGACCGGTCTCCTGGGCGA
ACGGGAGGGAGGCGCTGCCAAGGCCAAGGTGGAAGTATCGTCGGCATCCT
TGACGGCGCTTTCTCTGTTGATTAACAAGGCCTTTTCTAAAGCAGAAGCA
GGAGGAGCAGGGGCTGGAACAGCAGGCATTGAGGAGAATGGTCGAAATGG
TGTATTGACCGGCGTCCGTTTGGATGGCCCATCGCTGTCGACCTCCTTGC
CTGCTATGCAACTCCCGCCGCCTGCTCTGGCTGTCCATACCATAGCAAGG
TCGGATATGGCGACGACGAGGCACATTCCTGCCCACGCACACGGAGGGAG
GAAAGATGGAGACACCCCTTTCTCGTTTTCGGCTTTCACTAACTCGACGG
CCGCGACGACGGCATCTTCTGTCTCTTCTGCTAGTGACGGGCTGGGGGGA
GATGAGGACGTCACCAGCGCTGTGTCCCCTGCCGCCTCTGCCTTGTCGTC
CTCGTCCTCGTCCCAGGCCTCGTATGGGGAGGTGGAGGAAGAGGAGGAAG
CTGTGGGCTCGCCGTCGGCAGATGCGACGATGGGGCCCTTCATGCTGGAG
GAGCTCAACCTTAATCACTAGGCCAGCACCAGAGGAGGAAATGTGAGGAT
TATAATGATAGCTGAGAGTGATGTCTGTCGAGACGAGTCTGCCATAATTG
GGATGAGAGGCTCCACCATCCCCCCTACCTTGTCATCGTCCCCGCTCTTT
TTGCGAAGGGAGAAATAAAGGCGAGTGGGACGGAGAAGTGGAGGGCGAAT
ATGTAGAGAGCTAGGGACAAGGAAAGTGTATGTGGCTGCTGCTGTTGTGG
CTGTAGCTTTGGGTGGGTGAGGGTGTGGGTTTAATGTGGGTGTCAGCCTG
TGTACCATGCAGAGAGAGCAGGAACAATGGCGATGATGAAATGACAGGGA
GAGAGGGAGGAGAAGAGAGATGAGGGTAGAGCAAGCTTTTGTATTTCTCT
TCCACCTTTTTGATTTTATGGGTTCAAGGGAAGGAAGAGAATGAGAAGAT
GCGGCCGCCGCCCTGTCTGTCAAGCAACAGCATAAGAGATGCCTCAATCC
TCACGTGAAGATGCGGTGCCATCCATACCATCATTACCTCTGCTACCATC
AGTTAGTATTTGGTATAGCAAAAATACACCATGACTGATAAGAAGGGAGA
TAGAGAAAGGTCGAGAGATCAGCAAAAGGGACGGTGGCAGCAACAGAGTG
GTCCTGCAAGCAAACAAATAAGTAACCCCAAATGTGTTTAAAATGTTTTA
CATTTAATAGTCGATTAAGCTGTCACCAGCTGCAATAGTGACAGCACCAG
GAGGGGCAGTGAATACCGCCGTCTCAAGAAGCAGCAGCATACAGTGGAGC
AGCAGGTCTATGAAAAGACAATGTCGGAGCATTTTTCCACATATACTAAC
CTTGTTTGATCGTCTAAATGTTCTAATATTTCACTCTTAGGATGGGAAGA
AGTGCGCACGCAAGTCAAGGAAAAGGACTAGGGGTAAATAGTTGTATTAG
CGGGAATGTAGGGGCGTGTGTTTGTGTTTTTGTGTGTTCTCGGT

protein sequence of jgi.p|Nanoce1779_2|574792

>mRNA_955-protein ID=mRNA_955-protein|Name=jgi.p|Nanoce1779_2|574792|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MKHAHSPVVPSLDLLEELPAPQHPIVEVVPPCPLMLIRRSGIASQPISMG
DDNNNDNNIISLGEMGHDTPSTTMITAAATAAVAGLGYPKVLRTMSDSCI
PRAPRMSSSEPNPLFLERIPQLSLPPPSVKNGGHLVMNTEKYAGEKGGHK
LSSSLRERMGSLATSLMHFTATSCPSSVGDTAPVGEWQVEYDEETRPTVV
TGLLGEREGGAAKAKVEVSSASLTALSLLINKAFSKAEAGGAGAGTAGIE
ENGRNGVLTGVRLDGPSLSTSLPAMQLPPPALAVHTIARSDMATTRHIPA
HAHGGRKDGDTPFSFSAFTNSTAATTASSVSSASDGLGGDEDVTSAVSPA
ASALSSSSSSQASYGEVEEEEEAVGSPSADATMGPFMLEELNLNH*

mRNA from alignment at scaffold_2:843983..846576-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_955 ID=mRNA_955|Name=jgi.p|Nanoce1779_2|574792|organism=Nannochloropsis oceanica|type=mRNA|length=2594bp|location=Sequence derived from alignment at scaffold_2:843983..846576- (Nannochloropsis oceanica)
ACAGCGCCCCAGGCACTCTTTCATCTTTTAGCCAGCGAGCAGCCATGGCG
TTTTGCATCCTTTCCACGAGCATCATCAAGAACACCAGCAGCGTACACAT
GTGCCGGCGGCACCAGAAAATCTATTCGTGACACCGGCTCTGCACATAGA
CAGTAGAAGCAGCAGTAGCAAGCCAGTGTACAGCAACAGTGTTTTCCTGT
TCGTGATAAAGCGCTGACAGCTTTAAGCAAGAAACATAATCTCTATTCAA
ATCAAGCAGCGCAGCACAACCAACCATCATCAACCGAGCCTTATATTCTG
TCGGAGGTGACATTATCAGCACCAGCAAACCAGCAGCAACAACCTTCAGC
GCTTCACAGAGCTCTTACACGCAATATATCTTACGGCGCTGTCATCACTG
TTGCTCCATTGAGCAACCTTCCTCCGAAAAGTAATGAAACACGCGCATTC
GCCTGTCGTCCCCTCTCTTGACCTGCTCGAGGAGCTACCGGCGCCACAAC
ATCCAATTGTTGAAGTGGTTCCACCCTGTCCTTTGATGCTCATCCGGCGG
TCCGGGATTGCCTCTCAGCCGATTAGCATGGGTGACGACAACAACAATGA
TAACAACATCATCAGCCTGGGGGAGATGGGCCATGACACGCCCTCGACAA
CCATGATCACGGCAGCAGCAACAGCAGCAGTGGCGGGCCTTGGCTATCCT
AAAGTCCTGCGAACCATGTCGGATTCATGTATTCCTCGCGCCCCCCGCAT
GTCTTCTTCAGAGCCCAACCCTCTCTTCTTGGAAAGGATCCCCCAACTTT
CTTTGCCCCCTCCTTCGGTGAAGAACGGCGGACACCTTGTCATGAACACT
GAGAAGTATGCCGGAGAAAAAGGAGGGCACAAATTGTCCTCATCCCTTAG
GGAGCGTATGGGGTCGCTGGCAACTAGTTTAATGCATTTTACGGCGACTT
CATGCCCTAGCTCTGTGGGCGATACCGCTCCAGTTGGTGAGTGGCAAGTC
GAATACGATGAAGAGACACGGCCCACGGTGGTGACCGGTCTCCTGGGCGA
ACGGGAGGGAGGCGCTGCCAAGGCCAAGGTGGAAGTATCGTCGGCATCCT
TGACGGCGCTTTCTCTGTTGATTAACAAGGCCTTTTCTAAAGCAGAAGCA
GGAGGAGCAGGGGCTGGAACAGCAGGCATTGAGGAGAATGGTCGAAATGG
TGTATTGACCGGCGTCCGTTTGGATGGCCCATCGCTGTCGACCTCCTTGC
CTGCTATGCAACTCCCGCCGCCTGCTCTGGCTGTCCATACCATAGCAAGG
TCGGATATGGCGACGACGAGGCACATTCCTGCCCACGCACACGGAGGGAG
GAAAGATGGAGACACCCCTTTCTCGTTTTCGGCTTTCACTAACTCGACGG
CCGCGACGACGGCATCTTCTGTCTCTTCTGCTAGTGACGGGCTGGGGGGA
GATGAGGACGTCACCAGCGCTGTGTCCCCTGCCGCCTCTGCCTTGTCGTC
CTCGTCCTCGTCCCAGGCCTCGTATGGGGAGGTGGAGGAAGAGGAGGAAG
CTGTGGGCTCGCCGTCGGCAGATGCGACGATGGGGCCCTTCATGCTGGAG
GAGCTCAACCTTAATCACTAGGCCAGCACCAGAGGAGGAAATGTGAGGAT
TATAATGATAGCTGAGAGTGATGTCTGTCGAGACGAGTCTGCCATAATTG
GGATGAGAGGCTCCACCATCCCCCCTACCTTGTCATCGTCCCCGCTCTTT
TTGCGAAGGGAGAAATAAAGGCGAGTGGGACGGAGAAGTGGAGGGCGAAT
ATGTAGAGAGCTAGGGACAAGGAAAGTGTATGTGGCTGCTGCTGTTGTGG
CTGTAGCTTTGGGTGGGTGAGGGTGTGGGTTTAATGTGGGTGTCAGCCTG
TGTACCATGCAGAGAGAGCAGGAACAATGGCGATGATGAAATGACAGGGA
GAGAGGGAGGAGAAGAGAGATGAGGGTAGAGCAAGCTTTTGTATTTCTCT
TCCACCTTTTTGATTTTATGGGTTCAAGGGAAGGAAGAGAATGAGAAGAT
GCGGCCGCCGCCCTGTCTGTCAAGCAACAGCATAAGAGATGCCTCAATCC
TCACGTGAAGATGCGGTGCCATCCATACCATCATTACCTCTGCTACCATC
AGTTAGTATTTGGTATAGCAAAAATACACCATGACTGATAAGAAGGGAGA
TAGAGAAAGGTCGAGAGATCAGCAAAAGGGACGGTGGCAGCAACAGAGTG
GTCCTGCAAGCAAACAAATAAGTAACCCCAAATGTGTTTAAAATGTTTTA
CATTTAATAGTCGATTAAGCTGTCACCAGCTGCAATAGTGACAGCACCAG
GAGGGGCAGTGAATACCGCCGTCTCAAGAAGCAGCAGCATACAGTGGAGC
AGCAGGTCTATGAAAAGACAATGTCGGAGCATTTTTCCACATATACTAAC
CTTGTTTGATCGTCTAAATGTTCTAATATTTCACTCTTAGGATGGGAAGA
AGTGCGCACGCAAGTCAAGGAAAAGGACTAGGGGTAAATAGTTGTATTAG
CGGGAATGTAGGGGCGTGTGTTTGTGTTTTTGTGTGTTCTCGGT

Coding sequence (CDS) from alignment at scaffold_2:843983..846576-

>mRNA_955 ID=mRNA_955|Name=jgi.p|Nanoce1779_2|574792|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_2:843983..846576- (Nannochloropsis oceanica)
ATGAAACACGCGCATTCGCCTGTCGTCCCCTCTCTTGACCTGCTCGAGGA
GCTACCGGCGCCACAACATCCAATTGTTGAAGTGGTTCCACCCTGTCCTT
TGATGCTCATCCGGCGGTCCGGGATTGCCTCTCAGCCGATTAGCATGGGT
GACGACAACAACAATGATAACAACATCATCAGCCTGGGGGAGATGGGCCA
TGACACGCCCTCGACAACCATGATCACGGCAGCAGCAACAGCAGCAGTGG
CGGGCCTTGGCTATCCTAAAGTCCTGCGAACCATGTCGGATTCATGTATT
CCTCGCGCCCCCCGCATGTCTTCTTCAGAGCCCAACCCTCTCTTCTTGGA
AAGGATCCCCCAACTTTCTTTGCCCCCTCCTTCGGTGAAGAACGGCGGAC
ACCTTGTCATGAACACTGAGAAGTATGCCGGAGAAAAAGGAGGGCACAAA
TTGTCCTCATCCCTTAGGGAGCGTATGGGGTCGCTGGCAACTAGTTTAAT
GCATTTTACGGCGACTTCATGCCCTAGCTCTGTGGGCGATACCGCTCCAG
TTGGTGAGTGGCAAGTCGAATACGATGAAGAGACACGGCCCACGGTGGTG
ACCGGTCTCCTGGGCGAACGGGAGGGAGGCGCTGCCAAGGCCAAGGTGGA
AGTATCGTCGGCATCCTTGACGGCGCTTTCTCTGTTGATTAACAAGGCCT
TTTCTAAAGCAGAAGCAGGAGGAGCAGGGGCTGGAACAGCAGGCATTGAG
GAGAATGGTCGAAATGGTGTATTGACCGGCGTCCGTTTGGATGGCCCATC
GCTGTCGACCTCCTTGCCTGCTATGCAACTCCCGCCGCCTGCTCTGGCTG
TCCATACCATAGCAAGGTCGGATATGGCGACGACGAGGCACATTCCTGCC
CACGCACACGGAGGGAGGAAAGATGGAGACACCCCTTTCTCGTTTTCGGC
TTTCACTAACTCGACGGCCGCGACGACGGCATCTTCTGTCTCTTCTGCTA
GTGACGGGCTGGGGGGAGATGAGGACGTCACCAGCGCTGTGTCCCCTGCC
GCCTCTGCCTTGTCGTCCTCGTCCTCGTCCCAGGCCTCGTATGGGGAGGT
GGAGGAAGAGGAGGAAGCTGTGGGCTCGCCGTCGGCAGATGCGACGATGG
GGCCCTTCATGCTGGAGGAGCTCAACCTTAATCACTAG

Synonyms

Publications