jgi.p|Nanoce1779_2|609121, mRNA_9549 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609121
Unique NamemRNA_9549
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length626
Alignment locationscaffold_44:65297..66230 +

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Properties
Property NameValue
TranscriptId609207
TrackFilteredModels2
ProteinId609121
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:65297..66230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609121gene_9549Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609121mRNA_9549-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9549CDS_9549Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9549 ID=mRNA_9549|Name=jgi.p|Nanoce1779_2|609121|organism=Nannochloropsis oceanica|type=mRNA|length=626bp
GCCTCCTCTTTCTTCTCCTCATCCCCATCCTCATCCTCATCCCACTCTTC
TTCTCCTCCTTCTTCCTCCTCCTCCTCCTCCTCCTCGCACGGCGTTATGG
AGTCAATCTTCACTTCAGGTAGTTCTCTCTTGGTGATCAAGCCGAAATAC
CTGCTATTGCTCCTGGGGTTGTCTGGAGAAACGTGGTCGGCCCATTGGAC
CTCATACACGTCCGAGTCGTCCTCCGTTTGCTGCAACGTCCACAACTGTT
CGATTTCCATCTTTTCAGTTGGAGATATCGCGACGGTGATACCACATATC
GGTTCGAATCCTGAGTTGTAGAGGTGGAGCATGACCTTAAAATACTTGAT
GCTCCCTCCAGAAGCCTTCTTGTCCACTACTGAGTACTCTGAAATTTCAT
CGAGAATCAGCGTGCCCCTCAACTCGCCGTCCTCGCTCATGAGGTCGTCT
ACGATGTACACCTTTGCCGTTGGCGTTTCTTCGTCGTCTTCCTCATCCTC
TTCCTCTTCGTCCTCCTCGTCCTCTTCCTCGTCTTCGTCCTCCTCATCCT
CTTCTTCATCCTCCTCCTCATACTCATCATCATCACCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCATC
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protein sequence of jgi.p|Nanoce1779_2|609121

>mRNA_9549-protein ID=mRNA_9549-protein|Name=jgi.p|Nanoce1779_2|609121|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MESIFTSGSSLLVIKPKYLLLLLGLSGETWSAHWTSYTSESSSVCCNVHN
CSISIFSVGDIATVIPHIGSNPEL*
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mRNA from alignment at scaffold_44:65297..66230+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9549 ID=mRNA_9549|Name=jgi.p|Nanoce1779_2|609121|organism=Nannochloropsis oceanica|type=mRNA|length=934bp|location=Sequence derived from alignment at scaffold_44:65297..66230+ (Nannochloropsis oceanica)
GCCTCCTCTTTCTTCTCCTCATCCCCATCCTCATCCTCATCCCACTCTTC
TTCTCCTCCTTCTTCCTCCTCCTCCTCCTCCTCCTCGCACGGCGTTATGG
AGTCAATCTTCACTTCAGGTAGTTCTCTCTTGGTGATCAAGCCGAAATAC
CTGCTATTGCTCCTGTGGTATGTGGAAGTGAAATGGGGCAGTTGAGAGGG
GGAGGGAATTAGGGATTGATGCAGATTGTGGAGACTACTGAAGTAGGAAG
GAAGGAAGGGCGGGAGGGAGGGAGGGAGGGAGGGATGGATGGGACGTTGT
CAGTCCGTAGGATTCCGCACACCCATTTTATCTCCACATCCAGTGAGGGA
TGGAGGGAGGGGGGGAGGGGACATGCCTGGGGTTGTCTGGAGAAACGTGG
TCGGCCCATTGGACCTCATACACGTCCGAGTCGTCCTCCGTTTGCTGCAA
CGTCCACAACTGTTCGATTTCCATCTTTTCAGTTGGAGATATCGCGACGG
TGATACCACATATCGGTTCGAATCCTGAGTTGTAGAGGTGGAGCATGACC
TGCGGGAGGAGGGGAGGTAGGGAGGGAGGCGAAGAAGAGATGGAGATAGG
CCATCTTTCATAAGACACGGATCATACACACACGCCCACTAACCTTAAAA
TACTTGATGCTCCCTCCAGAAGCCTTCTTGTCCACTACTGAGTACTCTGA
AATTTCATCGAGAATCAGCGTGCCCCTCAACTCGCCGTCCTCGCTCATGA
GGTCGTCTACGATGTACACCTTTGCCGTTGGCGTTTCTTCGTCGTCTTCC
TCATCCTCTTCCTCTTCGTCCTCCTCGTCCTCTTCCTCGTCTTCGTCCTC
CTCATCCTCTTCTTCATCCTCCTCCTCATACTCATCATCATCACCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATC
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Coding sequence (CDS) from alignment at scaffold_44:65297..66230+

>mRNA_9549 ID=mRNA_9549|Name=jgi.p|Nanoce1779_2|609121|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_44:65297..66230+ (Nannochloropsis oceanica)
ATGGAGTCAATCTTCACTTCAGGTAGTTCTCTCTTGGTGATCAAGCCGAA
ATACCTGCTATTGCTCCTGGGGTTGTCTGGAGAAACGTGGTCGGCCCATT
GGACCTCATACACGTCCGAGTCGTCCTCCGTTTGCTGCAACGTCCACAAC
TGTTCGATTTCCATCTTTTCAGTTGGAGATATCGCGACGGTGATACCACA
TATCGGTTCGAATCCTGAGTTGTAGATGGAGTCAATCTTCACTTCAGGTA
GTTCTCTCTTGGTGATCAAGCCGAAATACCTGCTATTGCTCCTGGGGTTG
TCTGGAGAAACGTGGTCGGCCCATTGGACCTCATACACGTCCGAGTCGTC
CTCCGTTTGCTGCAACGTCCACAACTGTTCGATTTCCATCTTTTCAGTTG
GAGATATCGCGACGGTGATACCACATATCGGTTCGAATCCTGAGTTGTAG
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Synonyms
Publications