jgi.p|Nanoce1779_2|609118, mRNA_9547 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609118
Unique NamemRNA_9547
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length563
Alignment locationscaffold_44:64217..64779 +

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Properties
Property NameValue
TranscriptId609204
TrackFilteredModels2
ProteinId609118
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:64217..64779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609118gene_9547Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609118mRNA_9547-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9547CDS_9547Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9547 ID=mRNA_9547|Name=jgi.p|Nanoce1779_2|609118|organism=Nannochloropsis oceanica|type=mRNA|length=563bp
TTCTGGTTGTTTTGTCTGTGTGCTTCTTTTTCTCGGGGTGCGACGTCTTT
GTCATGTCTCTCTCTCCTCTTTCCATCTTTTTTCATTTCGTGTGCGAGTG
TGTGTGTGTGTGCGTGAGTGGGTGGGGTGGAGGTGTCTGTTGGGCACCCG
CATATCATTACAGGAAGCATCGTCGCTCCCTCTTTCTTCTCTTCCCCCTT
TCCCTCCCTCGTTTCCTTCCCCCATCCTATCTCTTTTTCCAACAATATTA
CAGTGCACACAAAATAAAACATCAAAGACCTTCCTTCCCCTGCTCCGTCT
CTCCCTTCCTACCCCCCTCTCTCTCTCCCTCCTTTCTTCCACAAAGCATT
CTGCTGTTTCCTCCTCTGCAATACCCTCCTGACAACCCTCGATGGCCCTC
CTAGCCACAACATTAAACAACCCGCCCTTCCTCCCCACCCCCTCCTTTGA
CCCCTTCACCAATAAATAAAGACCCTCCACCTCTCCCTCCCTCCTTTCCT
CCCTCAAAGTTTCGCTCCACACGCCTGGCTGGCCCTCACAACCACCATAT
TGGGATACCCGCC
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protein sequence of jgi.p|Nanoce1779_2|609118

>mRNA_9547-protein ID=mRNA_9547-protein|Name=jgi.p|Nanoce1779_2|609118|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MSLSPLSIFFHFVCECVCVCVSGWGGGVCWAPAYHYRKHRRSLFLLFPLS
LPRFLPPSYLFFQQYYSAHKIKHQRPSFPCSVSPFLPPSLSPSFLPQSIL
LFPPLQYPPDNPRWPS*
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mRNA from alignment at scaffold_44:64217..64779+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9547 ID=mRNA_9547|Name=jgi.p|Nanoce1779_2|609118|organism=Nannochloropsis oceanica|type=mRNA|length=563bp|location=Sequence derived from alignment at scaffold_44:64217..64779+ (Nannochloropsis oceanica)
TTCTGGTTGTTTTGTCTGTGTGCTTCTTTTTCTCGGGGTGCGACGTCTTT
GTCATGTCTCTCTCTCCTCTTTCCATCTTTTTTCATTTCGTGTGCGAGTG
TGTGTGTGTGTGCGTGAGTGGGTGGGGTGGAGGTGTCTGTTGGGCACCCG
CATATCATTACAGGAAGCATCGTCGCTCCCTCTTTCTTCTCTTCCCCCTT
TCCCTCCCTCGTTTCCTTCCCCCATCCTATCTCTTTTTCCAACAATATTA
CAGTGCACACAAAATAAAACATCAAAGACCTTCCTTCCCCTGCTCCGTCT
CTCCCTTCCTACCCCCCTCTCTCTCTCCCTCCTTTCTTCCACAAAGCATT
CTGCTGTTTCCTCCTCTGCAATACCCTCCTGACAACCCTCGATGGCCCTC
CTAGCCACAACATTAAACAACCCGCCCTTCCTCCCCACCCCCTCCTTTGA
CCCCTTCACCAATAAATAAAGACCCTCCACCTCTCCCTCCCTCCTTTCCT
CCCTCAAAGTTTCGCTCCACACGCCTGGCTGGCCCTCACAACCACCATAT
TGGGATACCCGCC
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Coding sequence (CDS) from alignment at scaffold_44:64217..64779+

>mRNA_9547 ID=mRNA_9547|Name=jgi.p|Nanoce1779_2|609118|organism=Nannochloropsis oceanica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_44:64217..64779+ (Nannochloropsis oceanica)
ATGTCTCTCTCTCCTCTTTCCATCTTTTTTCATTTCGTGTGCGAGTGTGT
GTGTGTGTGCGTGAGTGGGTGGGGTGGAGGTGTCTGTTGGGCACCCGCAT
ATCATTACAGGAAGCATCGTCGCTCCCTCTTTCTTCTCTTCCCCCTTTCC
CTCCCTCGTTTCCTTCCCCCATCCTATCTCTTTTTCCAACAATATTACAG
TGCACACAAAATAAAACATCAAAGACCTTCCTTCCCCTGCTCCGTCTCTC
CCTTCCTACCCCCCTCTCTCTCTCCCTCCTTTCTTCCACAAAGCATTCTG
CTGTTTCCTCCTCTGCAATACCCTCCTGACAACCCTCGATGGCCCTCCTA
G
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Synonyms
Publications