jgi.p|Nanoce1779_2|609109, mRNA_9544 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609109
Unique NamemRNA_9544
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length637
Alignment locationscaffold_44:60119..60755 +

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Properties
Property NameValue
TranscriptId609195
TrackFilteredModels2
ProteinId609109
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:60119..60755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609109gene_9544Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609109mRNA_9544-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9544CDS_9544Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9544 ID=mRNA_9544|Name=jgi.p|Nanoce1779_2|609109|organism=Nannochloropsis oceanica|type=mRNA|length=637bp
AGGAGCCCTCTGGAGACATCTGCTGTCGGAACCCGCATGGCCACAATGCA
CATGCACCCACTCTCTTCTAAGCACCAAATACGCCCTCTATGTACAGGAA
GATGTACGGCTTCTCAAGAAAACTGCGTGCTCTCATGCTGTTGTTCATTT
GCATTTGCCTTCCATTTTCTTTTCCAAACGCGGCAGCAGCCCGTGGAGCA
ACAGCGCCATCCTCCTTCCTAGTGACACCCGTCCCCTCCTTTCCGACCTC
TACTGCTCTTGCACGCAAGGACAGATTAAAAGTCTTTTGGGGGCTCTTTG
GTGGCAATAAGAAGCAGCCCAGTGCCAGCGGTGGCAACAAGGAAGACCCC
AAAAAGGTCAAGGCCCGCATCGCTTCTTGCAAGGTCTGCAATAGGAAAGG
CGCGATCGATTGCCCCACTTGTGCAGGCACGGGTATCGATAAGAAAAACG
GTGCAGTCTTTGAAAGATATAAGTGCTTGAGGTGTCAAGGCTTCGGATAT
GTTTCATGCGATGCCTGTAATCCCGGGGGGCTCACGCCTGAACAGCAAGG
GTTAAGATGAGGGTAGACGGATGCAGGCGACACGCCGGGAGAGTGCGAAT
AGGAACGAATGAGGATTAAATAAAAGAGGCTAGTGAC
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protein sequence of jgi.p|Nanoce1779_2|609109

>mRNA_9544-protein ID=mRNA_9544-protein|Name=jgi.p|Nanoce1779_2|609109|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MYRKMYGFSRKLRALMLLFICICLPFSFPNAAAARGATAPSSFLVTPVPS
FPTSTALARKDRLKVFWGLFGGNKKQPSASGGNKEDPKKVKARIASCKVC
NRKGAIDCPTCAGTGIDKKNGAVFERYKCLRCQGFGYVSCDACNPGGLTP
EQQGLR*
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mRNA from alignment at scaffold_44:60119..60755+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9544 ID=mRNA_9544|Name=jgi.p|Nanoce1779_2|609109|organism=Nannochloropsis oceanica|type=mRNA|length=637bp|location=Sequence derived from alignment at scaffold_44:60119..60755+ (Nannochloropsis oceanica)
AGGAGCCCTCTGGAGACATCTGCTGTCGGAACCCGCATGGCCACAATGCA
CATGCACCCACTCTCTTCTAAGCACCAAATACGCCCTCTATGTACAGGAA
GATGTACGGCTTCTCAAGAAAACTGCGTGCTCTCATGCTGTTGTTCATTT
GCATTTGCCTTCCATTTTCTTTTCCAAACGCGGCAGCAGCCCGTGGAGCA
ACAGCGCCATCCTCCTTCCTAGTGACACCCGTCCCCTCCTTTCCGACCTC
TACTGCTCTTGCACGCAAGGACAGATTAAAAGTCTTTTGGGGGCTCTTTG
GTGGCAATAAGAAGCAGCCCAGTGCCAGCGGTGGCAACAAGGAAGACCCC
AAAAAGGTCAAGGCCCGCATCGCTTCTTGCAAGGTCTGCAATAGGAAAGG
CGCGATCGATTGCCCCACTTGTGCAGGCACGGGTATCGATAAGAAAAACG
GTGCAGTCTTTGAAAGATATAAGTGCTTGAGGTGTCAAGGCTTCGGATAT
GTTTCATGCGATGCCTGTAATCCCGGGGGGCTCACGCCTGAACAGCAAGG
GTTAAGATGAGGGTAGACGGATGCAGGCGACACGCCGGGAGAGTGCGAAT
AGGAACGAATGAGGATTAAATAAAAGAGGCTAGTGAC
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Coding sequence (CDS) from alignment at scaffold_44:60119..60755+

>mRNA_9544 ID=mRNA_9544|Name=jgi.p|Nanoce1779_2|609109|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_44:60119..60755+ (Nannochloropsis oceanica)
ATGTACAGGAAGATGTACGGCTTCTCAAGAAAACTGCGTGCTCTCATGCT
GTTGTTCATTTGCATTTGCCTTCCATTTTCTTTTCCAAACGCGGCAGCAG
CCCGTGGAGCAACAGCGCCATCCTCCTTCCTAGTGACACCCGTCCCCTCC
TTTCCGACCTCTACTGCTCTTGCACGCAAGGACAGATTAAAAGTCTTTTG
GGGGCTCTTTGGTGGCAATAAGAAGCAGCCCAGTGCCAGCGGTGGCAACA
AGGAAGACCCCAAAAAGGTCAAGGCCCGCATCGCTTCTTGCAAGGTCTGC
AATAGGAAAGGCGCGATCGATTGCCCCACTTGTGCAGGCACGGGTATCGA
TAAGAAAAACGGTGCAGTCTTTGAAAGATATAAGTGCTTGAGGTGTCAAG
GCTTCGGATATGTTTCATGCGATGCCTGTAATCCCGGGGGGCTCACGCCT
GAACAGCAAGGGTTAAGATGA
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Synonyms
Publications