jgi.p|Nanoce1779_2|609106, mRNA_9543 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609106
Unique Name	mRNA_9543
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1654
Alignment location	scaffold_44:58317..60055 -

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Properties


Property Name	Value
TranscriptId	609192
Track	FilteredModels2
ProteinId	609106

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:58317..60055 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609106	gene_9543	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609106	mRNA_9543-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9543	CDS_9543	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:58317..60055-
coding sequence from alignment at scaffold_44:58317..60055-

mRNA sequence

>mRNA_9543 ID=mRNA_9543|Name=jgi.p|Nanoce1779_2|609106|organism=Nannochloropsis oceanica|type=mRNA|length=1654bp
AACAGGACGACATGTCATTTGAGCTTCTACCGTCAGCCTGGAGAGTCGTT
ATTCAGTCACCGCCAGGACTACTCAAAGCTCTCACACAAGAAGGGGCATT
GCTTTGTGCATCATTGTGTGCTAAAGTTAGAGAGGCTATCCAGGCCAAAC
ATTGGACGGAGGTGAAGACCTTGGGGAAAGAGCTACAAGAGGTGTCTTGG
GAGAGTCTCCACAGTGGGGCAGCCTGGAGGGAGGTCACAGTGACCATCAG
AAGGGCATATGCGCATTCCCAATTTGTCCTAGCGGCCGCCGAAATTGTGC
AAATGCAGCAAGATGGATATAGCGACACTGCAGAGACGTGCCTGAAAGAA
TGCATGCGCCGTTTGGACATGGCCCTATTAATGGGACCCCCAGACATTCA
AGCAGAAGCCAACGGTCTGATCGACTGGGTTCAAGACGAACTCCTCCAGC
ACCTGCCACAGAAGCCTTTGTTACCAGCACGGAAACGATTTCGTCCTTCC
AAAGCCCGAATCAACGATGAAGAGGACGATATCCCCCGCCTGGCCTGCCC
CTCCCTTCACGCCTTCCTCGACCAGCACATGAAGCCCCAAGTTCCTGTCA
TCCTCACAGATGGCTTAGAGCATTGGCCGGCATTAAAGTTATGGCGAGAT
TTGAATTACTTGAAACGCGTGGCAGGGCAGCGGGTTGTCCCGGTGGAGGT
GGGCACAGGGACGTACCTGACGGCTGAGACCGAGGAGGAGGGGGAAGACG
AGGAAGGAGGAGAATGGGGGCAGCAGCTTATGCCCCTGACGGATTTTATC
GAACGGTACGTGGTGGATGCTTGTTCTGAGGTGGATGGAGGAGAAGGAGA
GTTTGGAAGGGAGTCAGTGAAAAACTTGATGGTGAGTGGTGCTGATGCGA
AGTTAGAATATACAAGTGGAGGAGGAGAAGGAGAAGGAATAGGAAGAGAT
GTCGGAAAGATAGAAGGTAAGACTAATCGGGCCCTACGTGACAAAAGGAA
GAAGAAAGGATATCTGGCCCAGCACGAATTATTCGAGCAGGTCGCAGCCT
TAAAGAAAGACATTTATGTCCCTGATTACTGCGCTCTGGAGGTGGATGAG
GAGGGCGAGGAGGAGGAGGACGGTCAGGTGATCCTCCACGCTTGGTTTGG
ACCTGGAGGCACTGTCTCGCCGACGCACACTGACCCTTATCATAACCTGC
TAGCTCAAGTCGTGGGCTCCAAGGCCGTAAGACTTTTCGCGCCTTCGCAG
TCTCCTTACCTGTATGCGCATGAAGGCTTATTAAATAACAATAGCAGGGT
AAATGTTCAAAAGCCAGACCTGGAAAAATTTCCATTATTCGCCCAAGCAA
AGAGTCAGAGGTGCGTGCTGAAGGAGGGGGAGATGCTGTATATACCGCCG
TTGTGGTGGCATCACATCGAGAGCTTGGAAACGTCGTTTTCGGTGTCGTT
TTGGTGGGGGCGACGGAGGGGATGAAAGAGAGGGGCAGCGAGGGAGAGAA
AGGTGAAGAATGAAGCATTGAAAAAGGGAAGTGGGAAGCATAAAGCGTGC
AAATGACGAATTTTCGACGCTTGCGGGGTTGGAAACATAAATTTACTTGA
GGGAAGAAAGATCGGCTGTTGATAGTGACACACAGCAAAAGCGAGTAGGA
AAAT

protein sequence of jgi.p|Nanoce1779_2|609106

>mRNA_9543-protein ID=mRNA_9543-protein|Name=jgi.p|Nanoce1779_2|609106|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MSFELLPSAWRVVIQSPPGLLKALTQEGALLCASLCAKVREAIQAKHWTE
VKTLGKELQEVSWESLHSGAAWREVTVTIRRAYAHSQFVLAAAEIVQMQQ
DGYSDTAETCLKECMRRLDMALLMGPPDIQAEANGLIDWVQDELLQHLPQ
KPLLPARKRFRPSKARINDEEDDIPRLACPSLHAFLDQHMKPQVPVILTD
GLEHWPALKLWRDLNYLKRVAGQRVVPVEVGTGTYLTAETEEEGEDEEGG
EWGQQLMPLTDFIERYVVDACSEVDGGEGEFGRESVKNLMVSGADAKLEY
TSGGGEGEGIGRDVGKIEGKTNRALRDKRKKKGYLAQHELFEQVAALKKD
IYVPDYCALEVDEEGEEEEDGQVILHAWFGPGGTVSPTHTDPYHNLLAQV
VGSKAVRLFAPSQSPYLYAHEGLLNNNSRVNVQKPDLEKFPLFAQAKSQR
CVLKEGEMLYIPPLWWHHIESLETSFSVSFWWGRRRG*

mRNA from alignment at scaffold_44:58317..60055-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9543 ID=mRNA_9543|Name=jgi.p|Nanoce1779_2|609106|organism=Nannochloropsis oceanica|type=mRNA|length=1739bp|location=Sequence derived from alignment at scaffold_44:58317..60055- (Nannochloropsis oceanica)
AACAGGACGACATGTCATTTGAGCTTCTACCGTCAGCCTGGAGAGTCGTT
ATTCAGTCACCGCCAGGACTACTCAAAGGTAAAGATGCTCTTCCCCAAAA
TCAACCTCCCCCCATTATTATTGCTTGCCTTGCCTCAACCCATTCCTTTT
CCTACAATCCAAGCTCTCACACAAGAAGGGGCATTGCTTTGTGCATCATT
GTGTGCTAAAGTTAGAGAGGCTATCCAGGCCAAACATTGGACGGAGGTGA
AGACCTTGGGGAAAGAGCTACAAGAGGTGTCTTGGGAGAGTCTCCACAGT
GGGGCAGCCTGGAGGGAGGTCACAGTGACCATCAGAAGGGCATATGCGCA
TTCCCAATTTGTCCTAGCGGCCGCCGAAATTGTGCAAATGCAGCAAGATG
GATATAGCGACACTGCAGAGACGTGCCTGAAAGAATGCATGCGCCGTTTG
GACATGGCCCTATTAATGGGACCCCCAGACATTCAAGCAGAAGCCAACGG
TCTGATCGACTGGGTTCAAGACGAACTCCTCCAGCACCTGCCACAGAAGC
CTTTGTTACCAGCACGGAAACGATTTCGTCCTTCCAAAGCCCGAATCAAC
GATGAAGAGGACGATATCCCCCGCCTGGCCTGCCCCTCCCTTCACGCCTT
CCTCGACCAGCACATGAAGCCCCAAGTTCCTGTCATCCTCACAGATGGCT
TAGAGCATTGGCCGGCATTAAAGTTATGGCGAGATTTGAATTACTTGAAA
CGCGTGGCAGGGCAGCGGGTTGTCCCGGTGGAGGTGGGCACAGGGACGTA
CCTGACGGCTGAGACCGAGGAGGAGGGGGAAGACGAGGAAGGAGGAGAAT
GGGGGCAGCAGCTTATGCCCCTGACGGATTTTATCGAACGGTACGTGGTG
GATGCTTGTTCTGAGGTGGATGGAGGAGAAGGAGAGTTTGGAAGGGAGTC
AGTGAAAAACTTGATGGTGAGTGGTGCTGATGCGAAGTTAGAATATACAA
GTGGAGGAGGAGAAGGAGAAGGAATAGGAAGAGATGTCGGAAAGATAGAA
GGTAAGACTAATCGGGCCCTACGTGACAAAAGGAAGAAGAAAGGATATCT
GGCCCAGCACGAATTATTCGAGCAGGTCGCAGCCTTAAAGAAAGACATTT
ATGTCCCTGATTACTGCGCTCTGGAGGTGGATGAGGAGGGCGAGGAGGAG
GAGGACGGTCAGGTGATCCTCCACGCTTGGTTTGGACCTGGAGGCACTGT
CTCGCCGACGCACACTGACCCTTATCATAACCTGCTAGCTCAAGTCGTGG
GCTCCAAGGCCGTAAGACTTTTCGCGCCTTCGCAGTCTCCTTACCTGTAT
GCGCATGAAGGCTTATTAAATAACAATAGCAGGGTAAATGTTCAAAAGCC
AGACCTGGAAAAATTTCCATTATTCGCCCAAGCAAAGAGTCAGAGGTGCG
TGCTGAAGGAGGGGGAGATGCTGTATATACCGCCGTTGTGGTGGCATCAC
ATCGAGAGCTTGGAAACGTCGTTTTCGGTGTCGTTTTGGTGGGGGCGACG
GAGGGGATGAAAGAGAGGGGCAGCGAGGGAGAGAAAGGTGAAGAATGAAG
CATTGAAAAAGGGAAGTGGGAAGCATAAAGCGTGCAAATGACGAATTTTC
GACGCTTGCGGGGTTGGAAACATAAATTTACTTGAGGGAAGAAAGATCGG
CTGTTGATAGTGACACACAGCAAAAGCGAGTAGGAAAAT

Coding sequence (CDS) from alignment at scaffold_44:58317..60055-

>mRNA_9543 ID=mRNA_9543|Name=jgi.p|Nanoce1779_2|609106|organism=Nannochloropsis oceanica|type=CDS|length=2928bp|location=Sequence derived from alignment at scaffold_44:58317..60055- (Nannochloropsis oceanica)
CTCTCACACAAGAAGGGGCATTGCTTTGTGCATCATTGTGTGCTAAAGTT
AGAGAGGCTATCCAGGCCAAACATTGGACGGAGGTGAAGACCTTGGGGAA
AGAGCTACAAGAGGTGTCTTGGGAGAGTCTCCACAGTGGGGCAGCCTGGA
GGGAGGTCACAGTGACCATCAGAAGGGCATATGCGCATTCCCAATTTGTC
CTAGCGGCCGCCGAAATTGTGCAAATGCAGCAAGATGGATATAGCGACAC
TGCAGAGACGTGCCTGAAAGAATGCATGCGCCGTTTGGACATGGCCCTAT
TAATGGGACCCCCAGACATTCAAGCAGAAGCCAACGGTCTGATCGACTGG
GTTCAAGACGAACTCCTCCAGCACCTGCCACAGAAGCCTTTGTTACCAGC
ACGGAAACGATTTCGTCCTTCCAAAGCCCGAATCAACGATGAAGAGGACG
ATATCCCCCGCCTGGCCTGCCCCTCCCTTCACGCCTTCCTCGACCAGCAC
ATGAAGCCCCAAGTTCCTGTCATCCTCACAGATGGCTTAGAGCATTGGCC
GGCATTAAAGTTATGGCGAGATTTGAATTACTTGAAACGCGTGGCAGGGC
AGCGGGTTGTCCCGGTGGAGGTGGGCACAGGGACGTACCTGACGGCTGAG
ACCGAGGAGGAGGGGGAAGACGAGGAAGGAGGAGAATGGGGGCAGCAGCT
TATGCCCCTGACGGATTTTATCGAACGGTACGTGGTGGATGCTTGTTCTG
AGGTGGATGGAGGAGAAGGAGAGTTTGGAAGGGAGTCAGTGAAAAACTTG
ATGGTGAGTGGTGCTGATGCGAAGTTAGAATATACAAGTGGAGGAGGAGA
AGGAGAAGGAATAGGAAGAGATGTCGGAAAGATAGAAGGTAAGACTAATC
GGGCCCTACGTGACAAAAGGAAGAAGAAAGGATATCTGGCCCAGCACGAA
TTATTCGAGCAGGTCGCAGCCTTAAAGAAAGACATTTATGTCCCTGATTA
CTGCGCTCTGGAGGTGGATGAGGAGGGCGAGGAGGAGGAGGACGGTCAGG
TGATCCTCCACGCTTGGTTTGGACCTGGAGGCACTGTCTCGCCGACGCAC
ACTGACCCTTATCATAACCTGCTAGCTCAAGTCGTGGGCTCCAAGGCCGT
AAGACTTTTCGCGCCTTCGCAGTCTCCTTACCTGTATGCGCATGAAGGCT
TATTAAATAACAATAGCAGGGTAAATGTTCAAAAGCCAGACCTGGAAAAA
TTTCCATTATTCGCCCAAGCAAAGAGTCAGAGGTGCGTGCTGAAGGAGGG
GGAGATGCTGTATATACCGCCGTTGTGGTGGCATCACATCGAGAGCTTGG
AAACGTCGTTTTCGGTGTCGTTTTGGTGGGGGCGACGGAGGGGATGAATG
TCATTTGAGCTTCTACCGTCAGCCTGGAGAGTCGTTATTCAGTCACCGCC
AGGACTACTCAAAGCTCTCACACAAGAAGGGGCATTGCTTTGTGCATCAT
TGTGTGCTAAAGTTAGAGAGGCTATCCAGGCCAAACATTGGACGGAGGTG
AAGACCTTGGGGAAAGAGCTACAAGAGGTGTCTTGGGAGAGTCTCCACAG
TGGGGCAGCCTGGAGGGAGGTCACAGTGACCATCAGAAGGGCATATGCGC
ATTCCCAATTTGTCCTAGCGGCCGCCGAAATTGTGCAAATGCAGCAAGAT
GGATATAGCGACACTGCAGAGACGTGCCTGAAAGAATGCATGCGCCGTTT
GGACATGGCCCTATTAATGGGACCCCCAGACATTCAAGCAGAAGCCAACG
GTCTGATCGACTGGGTTCAAGACGAACTCCTCCAGCACCTGCCACAGAAG
CCTTTGTTACCAGCACGGAAACGATTTCGTCCTTCCAAAGCCCGAATCAA
CGATGAAGAGGACGATATCCCCCGCCTGGCCTGCCCCTCCCTTCACGCCT
TCCTCGACCAGCACATGAAGCCCCAAGTTCCTGTCATCCTCACAGATGGC
TTAGAGCATTGGCCGGCATTAAAGTTATGGCGAGATTTGAATTACTTGAA
ACGCGTGGCAGGGCAGCGGGTTGTCCCGGTGGAGGTGGGCACAGGGACGT
ACCTGACGGCTGAGACCGAGGAGGAGGGGGAAGACGAGGAAGGAGGAGAA
TGGGGGCAGCAGCTTATGCCCCTGACGGATTTTATCGAACGGTACGTGGT
GGATGCTTGTTCTGAGGTGGATGGAGGAGAAGGAGAGTTTGGAAGGGAGT
CAGTGAAAAACTTGATGGTGAGTGGTGCTGATGCGAAGTTAGAATATACA
AGTGGAGGAGGAGAAGGAGAAGGAATAGGAAGAGATGTCGGAAAGATAGA
AGGTAAGACTAATCGGGCCCTACGTGACAAAAGGAAGAAGAAAGGATATC
TGGCCCAGCACGAATTATTCGAGCAGGTCGCAGCCTTAAAGAAAGACATT
TATGTCCCTGATTACTGCGCTCTGGAGGTGGATGAGGAGGGCGAGGAGGA
GGAGGACGGTCAGGTGATCCTCCACGCTTGGTTTGGACCTGGAGGCACTG
TCTCGCCGACGCACACTGACCCTTATCATAACCTGCTAGCTCAAGTCGTG
GGCTCCAAGGCCGTAAGACTTTTCGCGCCTTCGCAGTCTCCTTACCTGTA
TGCGCATGAAGGCTTATTAAATAACAATAGCAGGGTAAATGTTCAAAAGC
CAGACCTGGAAAAATTTCCATTATTCGCCCAAGCAAAGAGTCAGAGGTGC
GTGCTGAAGGAGGGGGAGATGCTGTATATACCGCCGTTGTGGTGGCATCA
CATCGAGAGCTTGGAAACGTCGTTTTCGGTGTCGTTTTGGTGGGGGCGAC
GGAGGGGATGAATGTCATTTGAGCTTCTACCGTCAGCCTGGAGAGTCGTT
ATTCAGTCACCGCCAGGACTACTCAAAG

Synonyms

Publications