jgi.p|Nanoce1779_2|609101, mRNA_9542 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609101
Unique Name	mRNA_9542
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1826
Alignment location	scaffold_44:56452..58316 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	609187
Track	FilteredModels2
ProteinId	609101

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:56452..58316 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609101	gene_9542	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609101	mRNA_9542-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9542	CDS_9542	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:56452..58316+
coding sequence from alignment at scaffold_44:56452..58316+

mRNA sequence

>mRNA_9542 ID=mRNA_9542|Name=jgi.p|Nanoce1779_2|609101|organism=Nannochloropsis oceanica|type=mRNA|length=1826bp
ACAGGAAACAGGCCGTCATTGATTTCTTGTGGTGTCGTCCGTGAGCCAGG
CAGTCTCTGAGGTCCTTCCTGGCCCCAGTACCCTCCTCTATTTTCGCCCC
CCCCGCAAGTCCTCGCGTCCCTCGAGCGGGGGAACTTACCACGACAGCGC
TGCCTCTACTTCATTATTTTACACGAACTCACGATAAGACCATGCAATCG
GTTCCATTGCAGCCATCCATCCGCATCCGTCTTCCCTTTCTGACCAGCAT
TGCAGCCACAGGTGACGTTCACGGGCAGGAAAGGAACTACAAATACTATG
CCCAGATGTCCCAGCGGGCCTTCCTCCAAGACGTAGCCCAGCAATGCGGC
GTGGACTCGATTGAGCTTGTGTCTTCACGAGATTTGGGCGTGCGAATTGT
GGCATCGTCTCGGGCGGCCAATGCTCAAGCCGTGGCAGCCGTGTCATGCC
TTTTGCTTGGTTACTGCCACGGTCGGGCGAGGCCCGCATTGCTAATGGTG
CCCCTCTCCCACGCAGATAAACTACGCATGGAGCTGCCAAACATTCAATC
GGAGCATAGGAATGTACAGATCTTAGCAGGGATATTAATTGCCCCCGCAG
AATTTATTCCAGTGCTGGTTGCGCCGTCACCCTCCTTGTCTGCGGTCGAG
GCGGAAGCGCGAGTGGGTCAGACCGTCCGGCGATTGCAATACATGCTGTT
TGCGGCGGAAAATAAATACCCGTTCTGCCAGCAGCAGCAACAGCAGCAGC
AAAATCAGCAGCAGCAGCAGCTGTTGGTCTCTCCTTGGGGTTGTGTGGTG
GAAGAGAAACCACAAGAGCGGTCAAATATTCTCGGGATCCAGGAGCAGCA
AGCTAGAACCATTTACCGTACCCATGTACTGCCAGTATGGAGTGCCTCTG
TAACCATAATACCATCACCGTCATTGGGTGCGTCTTCTCTTCCCTTGTGG
CAATCACACCCTTCATCTCAATCTATCTCCTTCCCGGCAAGGCCGCTCCC
ACCGGCTTCCCTGCTGCAAGTCTTACACCACCACTATGGGCTCGTTCCCG
CCGAGCCCGAGAGTAATGGCCGAGACTTCTTCCGGATATGTAGTTTATTG
GTGCATGGGATACCTGATCTGAGTGCACAAGTCCGTGAATCTATCGCATC
GGCTATCTCGATGCATGAAGATCTTCTGCTCTATGCCGCGGCTGCAGTTA
CCGGCTCGGCCAATATGGAGTCAGTTGCACATGCTACCACAGCTGCTGCT
GTCTCTAAAGCTGCTAAAAAATACCTGCAAATTATACGCAGTGATTGGGG
TTTTGCTGGAGGGAGACTTGAGATGGAAGCGGCTGCTAGATTTTATGGGT
TTCATCTTGCCGTTTTTGACGCGGAGGCTCCGAATCTTCTGCATTTTCAC
ACGCGATTACCGTTTCCTTCGCCCGGTTGTGGTGGCGGTAACGATGGTGA
TGAAAGGCTCGTGTCCTTGCTGTATCACCGCGGAATGTGCTGGATGCTTC
TGAGAAAAGAAGAGGCCGGAAGAGCGGGAGGAGGGGTGGAGGAGATGGAG
ACAGAGGTGGTGGCGGTGACGGGAGTCGAGAAAGATAAAGACATGCATGA
TTTGTCCATTTCGTTACAGTCGGTGCTTAGTGAGGGCATGTCCGACGCGT
GAACGTAGAAAGAAGGAGAGGGGCAGGCGTTGTACTTGTATGTATGTGCA
TGAGGGTGTAGCTATAATGGTTTTGGTTCACAGAAATTCATCGACGCATG
CAGATGAGATGCTGACGGCCAGCATCCAAAACAGGATGTAGCAGGCTAGC
CAATTAATTTTCTATTTCGCATGGAC

protein sequence of jgi.p|Nanoce1779_2|609101

>mRNA_9542-protein ID=mRNA_9542-protein|Name=jgi.p|Nanoce1779_2|609101|organism=Nannochloropsis oceanica|type=polypeptide|length=487bp
MQSVPLQPSIRIRLPFLTSIAATGDVHGQERNYKYYAQMSQRAFLQDVAQ
QCGVDSIELVSSRDLGVRIVASSRAANAQAVAAVSCLLLGYCHGRARPAL
LMVPLSHADKLRMELPNIQSEHRNVQILAGILIAPAEFIPVLVAPSPSLS
AVEAEARVGQTVRRLQYMLFAAENKYPFCQQQQQQQQNQQQQQLLVSPWG
CVVEEKPQERSNILGIQEQQARTIYRTHVLPVWSASVTIIPSPSLGASSL
PLWQSHPSSQSISFPARPLPPASLLQVLHHHYGLVPAEPESNGRDFFRIC
SLLVHGIPDLSAQVRESIASAISMHEDLLLYAAAAVTGSANMESVAHATT
AAAVSKAAKKYLQIIRSDWGFAGGRLEMEAAARFYGFHLAVFDAEAPNLL
HFHTRLPFPSPGCGGGNDGDERLVSLLYHRGMCWMLLRKEEAGRAGGGVE
EMETEVVAVTGVEKDKDMHDLSISLQSVLSEGMSDA*

mRNA from alignment at scaffold_44:56452..58316+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9542 ID=mRNA_9542|Name=jgi.p|Nanoce1779_2|609101|organism=Nannochloropsis oceanica|type=mRNA|length=1865bp|location=Sequence derived from alignment at scaffold_44:56452..58316+ (Nannochloropsis oceanica)
ACAGGAAACAGGCCGTCATTGATTTCTTGTGGTGTCGTCCGTGAGCCAGG
CAGTCTCTGAGGTCCTTCCTGGCCCCAGTACCCTCCTCTATTTTCGCCCC
CCCCGCAAGTCCTCGCGTCCCTCGAGCGGGGGAACTTACCACGACAGCGC
TGCCTCTACTTCATTATTTTACACGAACTCACGATAAGACCATGCAATCG
GTTCCATTGCAGCCATCCATCCGCATCCGTCTTCCCTTTCTGACCAGCAT
TGCAGCCACAGGTGACGTTCACGGGCAGGAAAGGAACTACAAATACTATG
CCCAGATGTCCCAGCGGGCCTTCCTCCAAGACGTAGCCCAGCAATGCGGC
GTGGACTCGATTGAGCTTGTGTCTTCACGAGATTTGGGCGTGCGAATTGT
GGCATCGTCTCGGGCGGCCAATGCTCAAGCCGTGGCAGCCGTGTCATGCC
TTTTGCTTGGTTACTGCCACGGTCGGGCGAGGCCCGCATTGCTAATGGTG
CCCCTCTCCCACGCAGATAAACTACGCATGGAGCTGCCAAACATTCAATC
GGAGCATAGGAATGTACAGATCTTAGCAGGGATATTAATTGCCCCCGCAG
AATTTATTCCAGTGCTGGTTGCGCCGTCACCCTCCTTGTCTGCGGTCGAG
GCGGAAGCGCGAGTGGGTCAGACCGTCCGGCGATTGCAATACATGCTGTT
TGCGGCGGAAAATAAATACCCGTTCTGCCAGCAGCAGCAAGAGCAGCAGC
AAAATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAATCAGCAG
CAGCAGCAGCTGTTGGTCTCTCCTTGGGGTTGTGTGGTGGAAGAGAAACC
ACAAGAGCGGTCAAATATTCTCGGGATCCAGGAGCAGCAAGCTAGAACCA
TTTACCGTACCCATGTACTGCCAGTATGGAGTGCCTCTGTAACCATAATA
CCATCACCGTCATTGGGTGCGTCTTCTCTTCCCTTGTGGCAATCACACCC
TTCATCTCAATCTATCTCCTTCCCGGCAAGGCCGCTCCCACCGGCTTCCC
TGCTGCAAGTCTTACACCACCACTATGGGCTCGTTCCCGCCGAGCCCGAG
AGTAATGGCCGAGACTTCTTCCGGATATGTAGTTTATTGGTGCATGGGAT
ACCTGATCTGAGTGCACAAGTCCGTGAATCTATCGCATCGGCTATCTCGA
TGCATGAAGATCTTCTGCTCTATGCCGCGGCTGCAGTTACCGGCTCGGCC
AATATGGAGTCAGTTGCACATGCTACCACAGCTGCTGCTGTCTCTAAAGC
TGCTAAAAAATACCTGCAAATTATACGCAGTGATTGGGGTTTTGCTGGAG
GGAGACTTGAGATGGAAGCGGCTGCTAGATTTTATGGGTTTCATCTTGCC
GTTTTTGACGCGGAGGCTCCGAATCTTCTGCATTTTCACACGCGATTACC
GTTTCCTTCGCCCGGTTGTGGTGGCGGTAACGATGGTGATGAAAGGCTCG
TGTCCTTGCTGTATCACCGCGGAATGTGCTGGATGCTTCTGAGAAAAGAA
GAGGCCGGAAGAGCGGGAGGAGGGGTGGAGGAGATGGAGACAGAGGTGGT
GGCGGTGACGGGAGTCGAGAAAGATAAAGACATGCATGATTTGTCCATTT
CGTTACAGTCGGTGCTTAGTGAGGGCATGTCCGACGCGTGAACGTAGAAA
GAAGGAGAGGGGCAGGCGTTGTACTTGTATGTATGTGCATGAGGGTGTAG
CTATAATGGTTTTGGTTCACAGAAATTCATCGACGCATGCAGATGAGATG
CTGACGGCCAGCATCCAAAACAGGATGTAGCAGGCTAGCCAATTAATTTT
CTATTTCGCATGGAC

Coding sequence (CDS) from alignment at scaffold_44:56452..58316+

>mRNA_9542 ID=mRNA_9542|Name=jgi.p|Nanoce1779_2|609101|organism=Nannochloropsis oceanica|type=CDS|length=2922bp|location=Sequence derived from alignment at scaffold_44:56452..58316+ (Nannochloropsis oceanica)
ATGCAATCGGTTCCATTGCAGCCATCCATCCGCATCCGTCTTCCCTTTCT
GACCAGCATTGCAGCCACAGGTGACGTTCACGGGCAGGAAAGGAACTACA
AATACTATGCCCAGATGTCCCAGCGGGCCTTCCTCCAAGACGTAGCCCAG
CAATGCGGCGTGGACTCGATTGAGCTTGTGTCTTCACGAGATTTGGGCGT
GCGAATTGTGGCATCGTCTCGGGCGGCCAATGCTCAAGCCGTGGCAGCCG
TGTCATGCCTTTTGCTTGGTTACTGCCACGGTCGGGCGAGGCCCGCATTG
CTAATGGTGCCCCTCTCCCACGCAGATAAACTACGCATGGAGCTGCCAAA
CATTCAATCGGAGCATAGGAATGTACAGATCTTAGCAGGGATATTAATTG
CCCCCGCAGAATTTATTCCAGTGCTGGTTGCGCCGTCACCCTCCTTGTCT
GCGGTCGAGGCGGAAGCGCGAGTGGGTCAGACCGTCCGGCGATTGCAATA
CATGCTGTTTGCGGCGGAAAATAAATACCCGTTCTGCCAGCAGCAGCAAC
AGCAGCAGCAAAATCAGCAGCAGCAGCAGCTGTTGGTCTCTCCTTGGGGT
TGTGTGGTGGAAGAGAAACCACAAGAGCGGTCAAATATTCTCGGGATCCA
GGAGCAGCAAGCTAGAACCATTTACCGTACCCATGTACTGCCAGTATGGA
GTGCCTCTGTAACCATAATACCATCACCGTCATTGGGTGCGTCTTCTCTT
CCCTTGTGGCAATCACACCCTTCATCTCAATCTATCTCCTTCCCGGCAAG
GCCGCTCCCACCGGCTTCCCTGCTGCAAGTCTTACACCACCACTATGGGC
TCGTTCCCGCCGAGCCCGAGAGTAATGGCCGAGACTTCTTCCGGATATGT
AGTTTATTGGTGCATGGGATACCTGATCTGAGTGCACAAGTCCGTGAATC
TATCGCATCGGCTATCTCGATGCATGAAGATCTTCTGCTCTATGCCGCGG
CTGCAGTTACCGGCTCGGCCAATATGGAGTCAGTTGCACATGCTACCACA
GCTGCTGCTGTCTCTAAAGCTGCTAAAAAATACCTGCAAATTATACGCAG
TGATTGGGGTTTTGCTGGAGGGAGACTTGAGATGGAAGCGGCTGCTAGAT
TTTATGGGTTTCATCTTGCCGTTTTTGACGCGGAGGCTCCGAATCTTCTG
CATTTTCACACGCGATTACCGTTTCCTTCGCCCGGTTGTGGTGGCGGTAA
CGATGGTGATGAAAGGCTCGTGTCCTTGCTGTATCACCGCGGAATGTGCT
GGATGCTTCTGAGAAAAGAAGAGGCCGGAAGAGCGGGAGGAGGGGTGGAG
GAGATGGAGACAGAGGTGGTGGCGGTGACGGGAGTCGAGAAAGATAAAGA
CATGCATGATTTGTCCATTTCGTTACAGTCGGTGCTTAGTGAGGGCATGT
CCGACGCGTGAATGCAATCGGTTCCATTGCAGCCATCCATCCGCATCCGT
CTTCCCTTTCTGACCAGCATTGCAGCCACAGGTGACGTTCACGGGCAGGA
AAGGAACTACAAATACTATGCCCAGATGTCCCAGCGGGCCTTCCTCCAAG
ACGTAGCCCAGCAATGCGGCGTGGACTCGATTGAGCTTGTGTCTTCACGA
GATTTGGGCGTGCGAATTGTGGCATCGTCTCGGGCGGCCAATGCTCAAGC
CGTGGCAGCCGTGTCATGCCTTTTGCTTGGTTACTGCCACGGTCGGGCGA
GGCCCGCATTGCTAATGGTGCCCCTCTCCCACGCAGATAAACTACGCATG
GAGCTGCCAAACATTCAATCGGAGCATAGGAATGTACAGATCTTAGCAGG
GATATTAATTGCCCCCGCAGAATTTATTCCAGTGCTGGTTGCGCCGTCAC
CCTCCTTGTCTGCGGTCGAGGCGGAAGCGCGAGTGGGTCAGACCGTCCGG
CGATTGCAATACATGCTGTTTGCGGCGGAAAATAAATACCCGTTCTGCCA
GCAGCAGCAACAGCAGCAGCAAAATCAGCAGCAGCAGCAGCTGTTGGTCT
CTCCTTGGGGTTGTGTGGTGGAAGAGAAACCACAAGAGCGGTCAAATATT
CTCGGGATCCAGGAGCAGCAAGCTAGAACCATTTACCGTACCCATGTACT
GCCAGTATGGAGTGCCTCTGTAACCATAATACCATCACCGTCATTGGGTG
CGTCTTCTCTTCCCTTGTGGCAATCACACCCTTCATCTCAATCTATCTCC
TTCCCGGCAAGGCCGCTCCCACCGGCTTCCCTGCTGCAAGTCTTACACCA
CCACTATGGGCTCGTTCCCGCCGAGCCCGAGAGTAATGGCCGAGACTTCT
TCCGGATATGTAGTTTATTGGTGCATGGGATACCTGATCTGAGTGCACAA
GTCCGTGAATCTATCGCATCGGCTATCTCGATGCATGAAGATCTTCTGCT
CTATGCCGCGGCTGCAGTTACCGGCTCGGCCAATATGGAGTCAGTTGCAC
ATGCTACCACAGCTGCTGCTGTCTCTAAAGCTGCTAAAAAATACCTGCAA
ATTATACGCAGTGATTGGGGTTTTGCTGGAGGGAGACTTGAGATGGAAGC
GGCTGCTAGATTTTATGGGTTTCATCTTGCCGTTTTTGACGCGGAGGCTC
CGAATCTTCTGCATTTTCACACGCGATTACCGTTTCCTTCGCCCGGTTGT
GGTGGCGGTAACGATGGTGATGAAAGGCTCGTGTCCTTGCTGTATCACCG
CGGAATGTGCTGGATGCTTCTGAGAAAAGAAGAGGCCGGAAGAGCGGGAG
GAGGGGTGGAGGAGATGGAGACAGAGGTGGTGGCGGTGACGGGAGTCGAG
AAAGATAAAGACATGCATGATTTGTCCATTTCGTTACAGTCGGTGCTTAG
TGAGGGCATGTCCGACGCGTGA

Synonyms

Publications