jgi.p|Nanoce1779_2|609097, mRNA_9541 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609097
Unique NamemRNA_9541
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1569
Alignment locationscaffold_44:53611..55402 -

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Properties
Property NameValue
TranscriptId609183
TrackFilteredModels2
ProteinId609097
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:53611..55402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609097gene_9541Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609097mRNA_9541-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9541CDS_9541Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9541 ID=mRNA_9541|Name=jgi.p|Nanoce1779_2|609097|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCACCACCACCA
CCACCAGGGAAAGACCCATTGTCGCAATTCCAATGCCACAACAACAACAA
CAGCCACCACTACAATTACAACGAAAACGCATTCCTGTGGACCCTACCTG
GGAGGACAAAGTGGTGTATGTCATGGCTCAGTACTACCAAGAAGACAACT
CCGAGACACCCCTTGCCGTCATCAAAAACCTTTCAGGGGCCCTTTCCATT
GAGCTTATCCCACCTTTCTCTGAGGGCAGCAACAGCAGCAGCAGCAGCAG
CTTTAGTAGAAGTGGTAGTGGGTCGGAGATTGAGATCGTGGCGAGGACAT
GGCAGGAGCTCAAAGAGGCGGAAGCCTTACTGAGGCTCGTCTTCCAGTAC
TACAAGGGGGAGGGAAAATGGTGGCTTTACACGATTCCGACTTTCGTCTC
GTGCATCATCGCGGGGACAAAAGGCACAGAACTCCCGCAATTTTCCAACC
CCAGCCTCGGCCTCCATTGCGCCATCGCCCCCTACGACGAAGCTTCCACC
CGGCGCGCCTTCTTTTTAACTTGCCCCGAGTGGGGACCCCAGGACGCAGC
CTACCATTTCATTAAAAAGTGTTGGGAGTACTGGAAAGAGCTGGGGCTTG
AGCGGCAGCTGGATCGTTACTTGTCGGTGTTGCTGGGGGTGGTGGTGGTG
CCCATACGCGCAGATGGGAATTGTCTTTTTCGGGCCTTGGCAAAGTGTGT
GATGGGGGAGGAGGAGGCACACATGGTGGTGAGGAAGGCGGTGGTGAGCT
TCTTAAGGCGCAGCGATGAATTGAAGAGTTTTATCGTGGCGGAGGATGAG
GGGGAGGACAGTGCGGCGTTTGCGGAGAGGTATTGCGAGGAGATGGAGAA
GGACGGAACGTGGGGAGGTGAGTCAAGATGGGATGGATGGATGGATGGAT
GGAGGGAGGGAGGGAAGGAGGGAAGGAGGGGAGCAGGGAGGGCGGTTGCA
TGGTTCTGTCAGCACGTACATTTTAAAGCTGATGTCTCCTGCCCTCCCTC
TTCCCCTCCCTTTCTCCTTCCTTCCCTTCCTCTCGGTAGACCAAGTGGAA
ATAACGGCTTTTACACACGTGTATCGCCGCCCTGTCCGTGTCTGGAGCTA
CAACTACGCCGAGGCCCGCCTCCTCTCCGTCATTACTCCCCTCGAGGAAC
CCACGCCCACCACCCCTCCTTCTAACCCTACAGCAACTGGTACTGCTAGT
GCTGCTGCTCCTGCGGAGGAGATCTGGCTGTTACACCTTCACGGGCATTA
CTCACTGCTACAAAAGGGTGAACCCCCTCAGGACGAGGCCTGGGAGCAGA
TGCTGAGAGAGTGGGGTAAGACAAAGGAAGAGCGCACCCAAGCCTTATCG
GCCCATCAGCAGCAGCAACAGCCGCCGCAGCATCCACAGAAGTTGCAGGA
GGAGGACGTGGGAGAGCAAGCGCAGGAAAAGGAGGAGGTGAAGGAGGGAA
GGAGGGAGGGAAGGAGGGAGTTGCCGAGGATTTTCCCGGCGTTGTCTGGG
GAGGCGGACGAGCAGCAGG
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protein sequence of jgi.p|Nanoce1779_2|609097

>mRNA_9541-protein ID=mRNA_9541-protein|Name=jgi.p|Nanoce1779_2|609097|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MPQQQQQPPLQLQRKRIPVDPTWEDKVVYVMAQYYQEDNSETPLAVIKNL
SGALSIELIPPFSEGSNSSSSSSFSRSGSGSEIEIVARTWQELKEAEALL
RLVFQYYKGEGKWWLYTIPTFVSCIIAGTKGTELPQFSNPSLGLHCAIAP
YDEASTRRAFFLTCPEWGPQDAAYHFIKKCWEYWKELGLERQLDRYLSVL
LGVVVVPIRADGNCLFRALAKCVMGEEEAHMVVRKAVVSFLRRSDELKSF
IVAEDEGEDSAAFAERYCEEMEKDGTWGGESRWDGWMDGWREGGKEGRRG
AGRAVAWFCQHVHFKADVSCPPSSPPFLLPSLPLGRPSGNNGFYTRVSPP
CPCLELQLRRGPPPLRHYSPRGTHAHHPSF*
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mRNA from alignment at scaffold_44:53611..55402-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9541 ID=mRNA_9541|Name=jgi.p|Nanoce1779_2|609097|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp|location=Sequence derived from alignment at scaffold_44:53611..55402- (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCACCACCACCA
CCACCAGGGAAAGACCCATTGTCGCAATTCCAATGCCACAACAACAACAA
CAGCCACCACTACAATTACAACGAAAACGCATTCCTGTGGACCCTACCTG
GGAGGACAAAGTGGTGTATGTCATGGCTCAGTACTACCAAGAAGACAACT
CCGAGACACCCCTTGCCGTCATCAAAAACCTTTCAGGGGCCCTTTCCATT
GAGCTTATCCCACCTTTCTCTGAGGGCAGCAACAGCAGCAGCAGCAGCAG
CTTTAGTAGAAGTGGTAGTGGGTCGGAGATTGAGATCGTGGCGAGGACAT
GGCAGGAGCTCAAAGAGGCGGAAGCCTTACTGAGGCTCGTCTTCCAGTAC
TACAAGGGGGAGGGAAAATGGTGGCTTTACACGATTCCGACTTTCGTCTC
GGTGAGTGAATGGTGCTGTCCGGTGTGTGTGGGGGCGGGGGAACGTCCTT
TGTAATAATCATTCAAAAGAGGGGAGGGAGGAAGGGAGGGAGAGAGAAGA
GTGGCCGACATTTTTGACTGAGACAAAAACTCGACTCCTCTCTACGACTT
AAATTGATTGATCCTCTCTCAGACTGACTCTCTTTCCTTTTCTCCTCTTT
TACACACATACACACACCACTCAGTGCATCATCGCGGGGACAAAAGGCAC
AGAACTCCCGCAATTTTCCAACCCCAGCCTCGGCCTCCATTGCGCCATCG
CCCCCTACGACGAAGCTTCCACCCGGCGCGCCTTCTTTTTAACTTGCCCC
GAGTGGGGACCCCAGGACGCAGCCTACCATTTCATTAAAAAGTGTTGGGA
GTACTGGAAAGAGCTGGGGCTTGAGCGGCAGCTGGATCGTTACTTGTCGG
TGTTGCTGGGGGTGGTGGTGGTGCCCATACGCGCAGATGGGAATTGTCTT
TTTCGGGCCTTGGCAAAGTGTGTGATGGGGGAGGAGGAGGCACACATGGT
GGTGAGGAAGGCGGTGGTGAGCTTCTTAAGGCGCAGCGATGAATTGAAGA
GTTTTATCGTGGCGGAGGATGAGGGGGAGGACAGTGCGGCGTTTGCGGAG
AGGTATTGCGAGGAGATGGAGAAGGACGGAACGTGGGGAGGTGAGTCAAG
ATGGGATGGATGGATGGATGGATGGAGGGAGGGAGGGAAGGAGGGAAGGA
GGGGAGCAGGGAGGGCGGTTGCATGGTTCTGTCAGCACGTACATTTTAAA
GCTGATGTCTCCTGCCCTCCCTCTTCCCCTCCCTTTCTCCTTCCTTCCCT
TCCTCTCGGTAGACCAAGTGGAAATAACGGCTTTTACACACGTGTATCGC
CGCCCTGTCCGTGTCTGGAGCTACAACTACGCCGAGGCCCGCCTCCTCTC
CGTCATTACTCCCCTCGAGGAACCCACGCCCACCACCCCTCCTTCTAACC
CTACAGCAACTGGTACTGCTAGTGCTGCTGCTCCTGCGGAGGAGATCTGG
CTGTTACACCTTCACGGGCATTACTCACTGCTACAAAAGGGTGAACCCCC
TCAGGACGAGGCCTGGGAGCAGATGCTGAGAGAGTGGGGTAAGACAAAGG
AAGAGCGCACCCAAGCCTTATCGGCCCATCAGCAGCAGCAACAGCCGCCG
CAGCATCCACAGAAGTTGCAGGAGGAGGACGTGGGAGAGCAAGCGCAGGA
AAAGGAGGAGGTGAAGGAGGGAAGGAGGGAGGGAAGGAGGGAGTTGCCGA
GGATTTTCCCGGCGTTGTCTGGGGAGGCGGACGAGCAGCAGG
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Coding sequence (CDS) from alignment at scaffold_44:53611..55402-

>mRNA_9541 ID=mRNA_9541|Name=jgi.p|Nanoce1779_2|609097|organism=Nannochloropsis oceanica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_44:53611..55402- (Nannochloropsis oceanica)
TGCATCATCGCGGGGACAAAAGGCACAGAACTCCCGCAATTTTCCAACCC
CAGCCTCGGCCTCCATTGCGCCATCGCCCCCTACGACGAAGCTTCCACCC
GGCGCGCCTTCTTTTTAACTTGCCCCGAGTGGGGACCCCAGGACGCAGCC
TACCATTTCATTAAAAAGTGTTGGGAGTACTGGAAAGAGCTGGGGCTTGA
GCGGCAGCTGGATCGTTACTTGTCGGTGTTGCTGGGGGTGGTGGTGGTGC
CCATACGCGCAGATGGGAATTGTCTTTTTCGGGCCTTGGCAAAGTGTGTG
ATGGGGGAGGAGGAGGCACACATGGTGGTGAGGAAGGCGGTGGTGAGCTT
CTTAAGGCGCAGCGATGAATTGAAGAGTTTTATCGTGGCGGAGGATGAGG
GGGAGGACAGTGCGGCGTTTGCGGAGAGGTATTGCGAGGAGATGGAGAAG
GACGGAACGTGGGGAGGTGAGTCAAGATGGGATGGATGGATGGATGGATG
GAGGGAGGGAGGGAAGGAGGGAAGGAGGGGAGCAGGGAGGGCGGTTGCAT
GGTTCTGTCAGCACGTACATTTTAAAGCTGATGTCTCCTGCCCTCCCTCT
TCCCCTCCCTTTCTCCTTCCTTCCCTTCCTCTCGGTAGACCAAGTGGAAA
TAACGGCTTTTACACACGTGTATCGCCGCCCTGTCCGTGTCTGGAGCTAC
AACTACGCCGAGGCCCGCCTCCTCTCCGTCATTACTCCCCTCGAGGAACC
CACGCCCACCACCCCTCCTTCTAAATGCCACAACAACAACAACAGCCACC
ACTACAATTACAACGAAAACGCATTCCTGTGGACCCTACCTGGGAGGACA
AAGTGGTGTATGTCATGGCTCAGTACTACCAAGAAGACAACTCCGAGACA
CCCCTTGCCGTCATCAAAAACCTTTCAGGGGCCCTTTCCATTGAGCTTAT
CCCACCTTTCTCTGAGGGCAGCAACAGCAGCAGCAGCAGCAGCTTTAGTA
GAAGTGGTAGTGGGTCGGAGATTGAGATCGTGGCGAGGACATGGCAGGAG
CTCAAAGAGGCGGAAGCCTTACTGAGGCTCGTCTTCCAGTACTACAAGGG
GGAGGGAAAATGGTGGCTTTACACGATTCCGACTTTCGTCTCGTGCATCA
TCGCGGGGACAAAAGGCACAGAACTCCCGCAATTTTCCAACCCCAGCCTC
GGCCTCCATTGCGCCATCGCCCCCTACGACGAAGCTTCCACCCGGCGCGC
CTTCTTTTTAACTTGCCCCGAGTGGGGACCCCAGGACGCAGCCTACCATT
TCATTAAAAAGTGTTGGGAGTACTGGAAAGAGCTGGGGCTTGAGCGGCAG
CTGGATCGTTACTTGTCGGTGTTGCTGGGGGTGGTGGTGGTGCCCATACG
CGCAGATGGGAATTGTCTTTTTCGGGCCTTGGCAAAGTGTGTGATGGGGG
AGGAGGAGGCACACATGGTGGTGAGGAAGGCGGTGGTGAGCTTCTTAAGG
CGCAGCGATGAATTGAAGAGTTTTATCGTGGCGGAGGATGAGGGGGAGGA
CAGTGCGGCGTTTGCGGAGAGGTATTGCGAGGAGATGGAGAAGGACGGAA
CGTGGGGAGGTGAGTCAAGATGGGATGGATGGATGGATGGATGGAGGGAG
GGAGGGAAGGAGGGAAGGAGGGGAGCAGGGAGGGCGGTTGCATGGTTCTG
TCAGCACGTACATTTTAAAGCTGATGTCTCCTGCCCTCCCTCTTCCCCTC
CCTTTCTCCTTCCTTCCCTTCCTCTCGGTAGACCAAGTGGAAATAACGGC
TTTTACACACGTGTATCGCCGCCCTGTCCGTGTCTGGAGCTACAACTACG
CCGAGGCCCGCCTCCTCTCCGTCATTACTCCCCTCGAGGAACCCACGCCC
ACCACCCCTCCTTCTAAATGCCACAACAACAACAACAGCCACCACTACAA
TTACAACGAAAACGCATTCCTGTGGACCCTACCTGGGAGGACAAAGTGGT
GTATGTCATGGCTCAGTACTACCAAGAAGACAACTCCGAGACACCCCTTG
CCGTCATCAAAAACCTTTCAGGGGCCCTTTCCATTGAGCTTATCCCACCT
TTCTCTGAGGGCAGCAACAGCAGCAGCAGCAGCAGCTTTAGTAGAAGTGG
TAGTGGGTCGGAGATTGAGATCGTGGCGAGGACATGGCAGGAGCTCAAAG
AGGCGGAAGCCTTACTGAGGCTCGTCTTCCAGTACTACAAGGGGGAGGGA
AAATGGTGGCTTTACACGATTCCGACTTTCGTCTCG
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Synonyms
Publications