jgi.p|Nanoce1779_2|574791, mRNA_954 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574791
Unique Name	mRNA_954
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2404
Alignment location	scaffold_2:841304..843707 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574877
Track	FilteredModels2
ProteinId	574791

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:841304..843707 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574791	gene_954	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574791	mRNA_954-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_954	CDS_954	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:841304..843707+
coding sequence from alignment at scaffold_2:841304..843707+

mRNA sequence

>mRNA_954 ID=mRNA_954|Name=jgi.p|Nanoce1779_2|574791|organism=Nannochloropsis oceanica|type=mRNA|length=2404bp
ACAGCTCCCCTGCCTCATGTTCCTCCCACCATGACTCGCCCGCTGCATCT
CCTCCTCCCCCTCCTCCTCTTCCTCCTCTCCTCCGTCTTTCCTATGAACC
GGGCATTCTACCCCCGTCCCCGGGTCGGTGGCTTATCCATCTCCTCGTCT
TCGCCGACATTACCACGATCGTCCTCCACACAGCTGCGCTCGGATGTCTT
CTTCAATTTTGAGGGCCTCAAGCGACGGCTAAATCTAACCCACTTTAGCA
ACCCGGATTTGGAGCCTCCTCCATCATTGGCACCGCTCCAGGAAGAGGAC
TACATAAATCGTCCTGACCTTGTCAAGGCCAGGGAGATTGCCAAGGCTCT
CAATACTGAACTGACGGCGCCCGGCAACTACCCCAGCGTCGCCCTCTACT
TTCATGTGGCCGCCCACCATCTGCAGAGTTTTCGAGAGGCCCTTCAAGAC
TTTATTCAGGCGCAACAACACAGGGAAAAGAATGGCGATGTCTTCTGGGA
GGCATTCCAGTTGATAGGGCTACCTGCCGAATTGGAATACACACCTTACC
CCGGCAGTCAAGCAGGCCGCGTCCCCTCTCGCTCCCGTGTTTGCTTGTGT
GGGACCTTTGCGACTCAGCAGGCCGAGGAACGGGCCAAACATGATGTGAT
GAGATGGCGATCTACCCTAAAATCTCGATTGGCGGCCTACCGTCTCCTGG
GGGAGGATGAGAACGATCCCGTGGAGACCATGCCCATGAGTCAAGCCGTC
TACAGGCGCATCCGACCCAAAGGCCCTCCCACACAGCCTCGAACCTCCAC
CACCCACCCTGTAACCCCATCTTCCGTCTTTTTACTCGCCTTTTTACAAG
CCAGCTGGTCATCAGAGCGCAAGATTCGTCTGCATCTCGAGCGTCTCACG
CGTTATATGGCCGAGGTCACTGACCCTGATCCCTTCCTAGGGGGGCCGGC
GGAACGTACGGAGCTTTACATCGATCCCTCCTACCCCAGCGCGCACCGGG
TGTGGCACCAGTTTCCTAATCAAGCTGCGATGGTGAAGTGTTTGAGTGGA
CCTTATGTGGAGTTTTTGGGGGAAGGAGCCAAATTTCGAGCAAGGGTGAA
TCATGTAGAGCAAGCCTTTGCGCCATTGGTCGGGAGCGGGATTGAGGGAG
AGGGAAAGGGGAAAGGAGAGCTTTTCCCTCCTACTCTATCTGTTGTGTTG
TCGTCTTGTGGTTCTTATATGCCCTTGGTAGGGTACGGAACAAGCGTTTA
TCGAGGGCGGGAGCGAGAGGGGGAGCTGCCACTTGGGGAAGCTATGCGAA
TTGCCTTGCGTGCAGGTTGCCGCCTCCTCGATTGCAGTCCTAATTATGGC
ACACAAAAGGAAGTAGGTGAGGTGCTATGCCAAGTATTTGAGGCCCATGA
AACAACGCGGGAGCGGGTGTTCATCGTGAGCAGTTTGAGTTGGGAGGTGG
TGGTGCAGACAGGCGGAGATAGGGACGAAATTAAGGCAGACGTGAGGAAA
ACATTCCAGGAGCTCAATGTCGAATACTTAGACCTTTTGCTGCTGCCGTA
CGTAGTAGGGAGCGACGACGAGAACGAGAGGCATGCGTCGTTGTGGAGGG
CTATGGAGGCGTTGGTGGAGGAAGGGCTGGTGCGTCATTTAGGCGTGGGA
GGGTTTCCTCTTGAAAGTCTGAAGGCGCTGCAGAGCGACCCTACCATCGC
CTGCCAGCCGGTGGTCTGTCAATTGGAGCACCATCCTTTTTACCGTGACG
AGACTTTGGTGGAGTACTGTGAAGAGAATGGGATTCAGTTGCTTGCGCAC
ACTCCTTTAGGCCGTCCTGCCCTTTCGCGGCCTCCCGGGAGCAACCCTCT
GAGAGAGCCATTGGTTGAAATGTCGGCCACGGCGCTCGAATGCAGCCCGG
CTCAAGTGGTTCTACGGTGGGCGGTGCAACAAGGCGTGGCCGTTGTGCCC
AACTCTTTGAGTAGGTCTCATATATTAGAGAATTCTAATCTACATACCTT
TACGTTAGCTCCTTTTCGAGTGGACGTGCTGCGGGACATGGCTGCTATTC
GAAACTTGCGTTTTGCCGACCCTATGATTACGGCTACTGCATCTGGAAGG
ATGATGACACCGCCTTATTCTTTGGAAGATGTACGAAGGCACGGTTTAGT
GTACGGGGATGATGGCGCGATTATTCCACCCGGGAGTGCTTACAAGTATA
TGGAATTGACGGTGGAGGTATTTGAGCGGTTGGATTTGGGGGATATGGCG
GAGCTCTTGCTGGAGCCGCGGACGATTGATGGGACTTTTCCGGGCATGGA
TGTTGAGCCGATTGAGGAGGGGGAGTAGAAGGGGAGAGGACAAGTAAAAT
TGTAGGTTTAATATGATTGAAATGAAAAGAAAGAAATGGGTAGAGCACGT
TTGA

protein sequence of jgi.p|Nanoce1779_2|574791

>mRNA_954-protein ID=mRNA_954-protein|Name=jgi.p|Nanoce1779_2|574791|organism=Nannochloropsis oceanica|type=polypeptide|length=766bp
MTRPLHLLLPLLLFLLSSVFPMNRAFYPRPRVGGLSISSSSPTLPRSSST
QLRSDVFFNFEGLKRRLNLTHFSNPDLEPPPSLAPLQEEDYINRPDLVKA
REIAKALNTELTAPGNYPSVALYFHVAAHHLQSFREALQDFIQAQQHREK
NGDVFWEAFQLIGLPAELEYTPYPGSQAGRVPSRSRVCLCGTFATQQAEE
RAKHDVMRWRSTLKSRLAAYRLLGEDENDPVETMPMSQAVYRRIRPKGPP
TQPRTSTTHPVTPSSVFLLAFLQASWSSERKIRLHLERLTRYMAEVTDPD
PFLGGPAERTELYIDPSYPSAHRVWHQFPNQAAMVKCLSGPYVEFLGEGA
KFRARVNHVEQAFAPLVGSGIEGEGKGKGELFPPTLSVVLSSCGSYMPLV
GYGTSVYRGREREGELPLGEAMRIALRAGCRLLDCSPNYGTQKEVGEVLC
QVFEAHETTRERVFIVSSLSWEVVVQTGGDRDEIKADVRKTFQELNVEYL
DLLLLPYVVGSDDENERHASLWRAMEALVEEGLVRHLGVGGFPLESLKAL
QSDPTIACQPVVCQLEHHPFYRDETLVEYCEENGIQLLAHTPLGRPALSR
PPGSNPLREPLVEMSATALECSPAQVVLRWAVQQGVAVVPNSLSRSHILE
NSNLHTFTLAPFRVDVLRDMAAIRNLRFADPMITATASGRMMTPPYSLED
VRRHGLVYGDDGAIIPPGSAYKYMELTVEVFERLDLGDMAELLLEPRTID
GTFPGMDVEPIEEGE*

mRNA from alignment at scaffold_2:841304..843707+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_954 ID=mRNA_954|Name=jgi.p|Nanoce1779_2|574791|organism=Nannochloropsis oceanica|type=mRNA|length=2404bp|location=Sequence derived from alignment at scaffold_2:841304..843707+ (Nannochloropsis oceanica)
ACAGCTCCCCTGCCTCATGTTCCTCCCACCATGACTCGCCCGCTGCATCT
CCTCCTCCCCCTCCTCCTCTTCCTCCTCTCCTCCGTCTTTCCTATGAACC
GGGCATTCTACCCCCGTCCCCGGGTCGGTGGCTTATCCATCTCCTCGTCT
TCGCCGACATTACCACGATCGTCCTCCACACAGCTGCGCTCGGATGTCTT
CTTCAATTTTGAGGGCCTCAAGCGACGGCTAAATCTAACCCACTTTAGCA
ACCCGGATTTGGAGCCTCCTCCATCATTGGCACCGCTCCAGGAAGAGGAC
TACATAAATCGTCCTGACCTTGTCAAGGCCAGGGAGATTGCCAAGGCTCT
CAATACTGAACTGACGGCGCCCGGCAACTACCCCAGCGTCGCCCTCTACT
TTCATGTGGCCGCCCACCATCTGCAGAGTTTTCGAGAGGCCCTTCAAGAC
TTTATTCAGGCGCAACAACACAGGGAAAAGAATGGCGATGTCTTCTGGGA
GGCATTCCAGTTGATAGGGCTACCTGCCGAATTGGAATACACACCTTACC
CCGGCAGTCAAGCAGGCCGCGTCCCCTCTCGCTCCCGTGTTTGCTTGTGT
GGGACCTTTGCGACTCAGCAGGCCGAGGAACGGGCCAAACATGATGTGAT
GAGATGGCGATCTACCCTAAAATCTCGATTGGCGGCCTACCGTCTCCTGG
GGGAGGATGAGAACGATCCCGTGGAGACCATGCCCATGAGTCAAGCCGTC
TACAGGCGCATCCGACCCAAAGGCCCTCCCACACAGCCTCGAACCTCCAC
CACCCACCCTGTAACCCCATCTTCCGTCTTTTTACTCGCCTTTTTACAAG
CCAGCTGGTCATCAGAGCGCAAGATTCGTCTGCATCTCGAGCGTCTCACG
CGTTATATGGCCGAGGTCACTGACCCTGATCCCTTCCTAGGGGGGCCGGC
GGAACGTACGGAGCTTTACATCGATCCCTCCTACCCCAGCGCGCACCGGG
TGTGGCACCAGTTTCCTAATCAAGCTGCGATGGTGAAGTGTTTGAGTGGA
CCTTATGTGGAGTTTTTGGGGGAAGGAGCCAAATTTCGAGCAAGGGTGAA
TCATGTAGAGCAAGCCTTTGCGCCATTGGTCGGGAGCGGGATTGAGGGAG
AGGGAAAGGGGAAAGGAGAGCTTTTCCCTCCTACTCTATCTGTTGTGTTG
TCGTCTTGTGGTTCTTATATGCCCTTGGTAGGGTACGGAACAAGCGTTTA
TCGAGGGCGGGAGCGAGAGGGGGAGCTGCCACTTGGGGAAGCTATGCGAA
TTGCCTTGCGTGCAGGTTGCCGCCTCCTCGATTGCAGTCCTAATTATGGC
ACACAAAAGGAAGTAGGTGAGGTGCTATGCCAAGTATTTGAGGCCCATGA
AACAACGCGGGAGCGGGTGTTCATCGTGAGCAGTTTGAGTTGGGAGGTGG
TGGTGCAGACAGGCGGAGATAGGGACGAAATTAAGGCAGACGTGAGGAAA
ACATTCCAGGAGCTCAATGTCGAATACTTAGACCTTTTGCTGCTGCCGTA
CGTAGTAGGGAGCGACGACGAGAACGAGAGGCATGCGTCGTTGTGGAGGG
CTATGGAGGCGTTGGTGGAGGAAGGGCTGGTGCGTCATTTAGGCGTGGGA
GGGTTTCCTCTTGAAAGTCTGAAGGCGCTGCAGAGCGACCCTACCATCGC
CTGCCAGCCGGTGGTCTGTCAATTGGAGCACCATCCTTTTTACCGTGACG
AGACTTTGGTGGAGTACTGTGAAGAGAATGGGATTCAGTTGCTTGCGCAC
ACTCCTTTAGGCCGTCCTGCCCTTTCGCGGCCTCCCGGGAGCAACCCTCT
GAGAGAGCCATTGGTTGAAATGTCGGCCACGGCGCTCGAATGCAGCCCGG
CTCAAGTGGTTCTACGGTGGGCGGTGCAACAAGGCGTGGCCGTTGTGCCC
AACTCTTTGAGTAGGTCTCATATATTAGAGAATTCTAATCTACATACCTT
TACGTTAGCTCCTTTTCGAGTGGACGTGCTGCGGGACATGGCTGCTATTC
GAAACTTGCGTTTTGCCGACCCTATGATTACGGCTACTGCATCTGGAAGG
ATGATGACACCGCCTTATTCTTTGGAAGATGTACGAAGGCACGGTTTAGT
GTACGGGGATGATGGCGCGATTATTCCACCCGGGAGTGCTTACAAGTATA
TGGAATTGACGGTGGAGGTATTTGAGCGGTTGGATTTGGGGGATATGGCG
GAGCTCTTGCTGGAGCCGCGGACGATTGATGGGACTTTTCCGGGCATGGA
TGTTGAGCCGATTGAGGAGGGGGAGTAGAAGGGGAGAGGACAAGTAAAAT
TGTAGGTTTAATATGATTGAAATGAAAAGAAAGAAATGGGTAGAGCACGT
TTGA

Coding sequence (CDS) from alignment at scaffold_2:841304..843707+

>mRNA_954 ID=mRNA_954|Name=jgi.p|Nanoce1779_2|574791|organism=Nannochloropsis oceanica|type=CDS|length=2298bp|location=Sequence derived from alignment at scaffold_2:841304..843707+ (Nannochloropsis oceanica)
ATGACTCGCCCGCTGCATCTCCTCCTCCCCCTCCTCCTCTTCCTCCTCTC
CTCCGTCTTTCCTATGAACCGGGCATTCTACCCCCGTCCCCGGGTCGGTG
GCTTATCCATCTCCTCGTCTTCGCCGACATTACCACGATCGTCCTCCACA
CAGCTGCGCTCGGATGTCTTCTTCAATTTTGAGGGCCTCAAGCGACGGCT
AAATCTAACCCACTTTAGCAACCCGGATTTGGAGCCTCCTCCATCATTGG
CACCGCTCCAGGAAGAGGACTACATAAATCGTCCTGACCTTGTCAAGGCC
AGGGAGATTGCCAAGGCTCTCAATACTGAACTGACGGCGCCCGGCAACTA
CCCCAGCGTCGCCCTCTACTTTCATGTGGCCGCCCACCATCTGCAGAGTT
TTCGAGAGGCCCTTCAAGACTTTATTCAGGCGCAACAACACAGGGAAAAG
AATGGCGATGTCTTCTGGGAGGCATTCCAGTTGATAGGGCTACCTGCCGA
ATTGGAATACACACCTTACCCCGGCAGTCAAGCAGGCCGCGTCCCCTCTC
GCTCCCGTGTTTGCTTGTGTGGGACCTTTGCGACTCAGCAGGCCGAGGAA
CGGGCCAAACATGATGTGATGAGATGGCGATCTACCCTAAAATCTCGATT
GGCGGCCTACCGTCTCCTGGGGGAGGATGAGAACGATCCCGTGGAGACCA
TGCCCATGAGTCAAGCCGTCTACAGGCGCATCCGACCCAAAGGCCCTCCC
ACACAGCCTCGAACCTCCACCACCCACCCTGTAACCCCATCTTCCGTCTT
TTTACTCGCCTTTTTACAAGCCAGCTGGTCATCAGAGCGCAAGATTCGTC
TGCATCTCGAGCGTCTCACGCGTTATATGGCCGAGGTCACTGACCCTGAT
CCCTTCCTAGGGGGGCCGGCGGAACGTACGGAGCTTTACATCGATCCCTC
CTACCCCAGCGCGCACCGGGTGTGGCACCAGTTTCCTAATCAAGCTGCGA
TGGTGAAGTGTTTGAGTGGACCTTATGTGGAGTTTTTGGGGGAAGGAGCC
AAATTTCGAGCAAGGGTGAATCATGTAGAGCAAGCCTTTGCGCCATTGGT
CGGGAGCGGGATTGAGGGAGAGGGAAAGGGGAAAGGAGAGCTTTTCCCTC
CTACTCTATCTGTTGTGTTGTCGTCTTGTGGTTCTTATATGCCCTTGGTA
GGGTACGGAACAAGCGTTTATCGAGGGCGGGAGCGAGAGGGGGAGCTGCC
ACTTGGGGAAGCTATGCGAATTGCCTTGCGTGCAGGTTGCCGCCTCCTCG
ATTGCAGTCCTAATTATGGCACACAAAAGGAAGTAGGTGAGGTGCTATGC
CAAGTATTTGAGGCCCATGAAACAACGCGGGAGCGGGTGTTCATCGTGAG
CAGTTTGAGTTGGGAGGTGGTGGTGCAGACAGGCGGAGATAGGGACGAAA
TTAAGGCAGACGTGAGGAAAACATTCCAGGAGCTCAATGTCGAATACTTA
GACCTTTTGCTGCTGCCGTACGTAGTAGGGAGCGACGACGAGAACGAGAG
GCATGCGTCGTTGTGGAGGGCTATGGAGGCGTTGGTGGAGGAAGGGCTGG
TGCGTCATTTAGGCGTGGGAGGGTTTCCTCTTGAAAGTCTGAAGGCGCTG
CAGAGCGACCCTACCATCGCCTGCCAGCCGGTGGTCTGTCAATTGGAGCA
CCATCCTTTTTACCGTGACGAGACTTTGGTGGAGTACTGTGAAGAGAATG
GGATTCAGTTGCTTGCGCACACTCCTTTAGGCCGTCCTGCCCTTTCGCGG
CCTCCCGGGAGCAACCCTCTGAGAGAGCCATTGGTTGAAATGTCGGCCAC
GGCGCTCGAATGCAGCCCGGCTCAAGTGGTTCTACGGTGGGCGGTGCAAC
AAGGCGTGGCCGTTGTGCCCAACTCTTTGAGTAGGTCTCATATATTAGAG
AATTCTAATCTACATACCTTTACGTTAGCTCCTTTTCGAGTGGACGTGCT
GCGGGACATGGCTGCTATTCGAAACTTGCGTTTTGCCGACCCTATGATTA
CGGCTACTGCATCTGGAAGGATGATGACACCGCCTTATTCTTTGGAAGAT
GTACGAAGGCACGGTTTAGTGTACGGGGATGATGGCGCGATTATTCCACC
CGGGAGTGCTTACAAGTATATGGAATTGACGGTGGAGGTATTTGAGCGGT
TGGATTTGGGGGATATGGCGGAGCTCTTGCTGGAGCCGCGGACGATTGAT
GGGACTTTTCCGGGCATGGATGTTGAGCCGATTGAGGAGGGGGAGTAG

Synonyms

Publications