jgi.p|Nanoce1779_2|533736, mRNA_9535 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533736
Unique Name	mRNA_9535
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1482
Alignment location	scaffold_44:37174..38655 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	533822
Track	FilteredModels2
ProteinId	533736

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:37174..38655 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533736	gene_9535	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533736	mRNA_9535-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9535	CDS_9535	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:37174..38655+
coding sequence from alignment at scaffold_44:37174..38655+

mRNA sequence

>mRNA_9535 ID=mRNA_9535|Name=jgi.p|Nanoce1779_2|533736|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp
ATGGCCGAGAAATCCAAAGACAAGGAAACGGAGGAGAGCACCACCACTAG
CAGCACCACAAATAGCAAGGCATATCACCGTATCGACCCTCCCCCCGAAG
TCCTTTCCCTCCGCCTTCTGGCCGAAGACGGCCTCCGCGCCTTGCTTCCA
AGAGGCTACCCACGCTCGGTCCAAAAAGGGTACGCAGAATATGTCAAACT
TCAAATGACAGCTTCCCTGGCCAGCTCCGCCATTGGTGTGCTCTCCACTC
AATCCCTCCTCTACGCCATGGGCCTGGGCGCCGGCGCCATCCCCCTCGCC
GCGGCCCTTAACTGGATCATAAAAGACGGGATCGGACAAGTCGGCGGCAT
CATATTCGCCAGTGTCGTGAACGACCGATTCGACGCGAATCCCAAACGCT
GGAAAATGGTCGCCACGATTTCCCTTGACCTCTCCTGCGCACTCGAGCTC
CTTGCGCCTCTCGCCCCAGGGTCCTTCCTCGCCATCGCCTCCCTCGCCAA
CGTCGGCAAAAACGTATGTTTCCTCTCCGCCTCCGCCTCGCGCGCGGCCA
TCCACAACTCCTTCGCCAAACGGGAGAATCTCGCCGACATCACCGCAAAA
GCTGGTTCTCAATTCATAGTCACTTCAATCCTCGGCACTGGTCTGGGTAT
CGCCCTCTCCACCGCACTAGGCTCTTCCTGGATGGCGCTCGCTCCCATCT
GTGCAGGGCTGTCTTTTGTCCACATTTCTTGTAACTACCTATCCCTACGC
CACGTTTGCCTCAACACAATCAACGCCGAGAGGATGGAGTTGATCATGCA
GCACTACGTCCTCACAGGCCGCATCCCCGCCCCGGGCGACATATCTCCAA
TCGAACGGTTTATGACCCCCGCCATCTATGACACAGTGGCCCCTTCCGCA
TTAGTGGCGCGCTTGCCTTCCTTGAGGATGGGGAGGCACTTAGACGAGGT
GGCAAGCCTTGAGCAGCTGCCAAGGTTGGCCCGGTTGTTCGAAAAGGAGA
AATATGTTTTGAATGCGAAGGGAAGGAGGGGGGATGGGACGGCGACCGTT
GATGTGTTGATGAAGGAAGAGGCAAATGTCCACGACGTGTTGAAGGCGTG
CGTGCATTCGTACTACGTCAGAAAGGAGGCAGGGAGGGAGGGAGGGTGGA
AGGCCCCTCGGGTGCAGTCGGCGTGGGCGAGGTTGATGGAGAAGAAGGAG
GTGGAACGGTCAGATACGTGGCTCATTGACCTCGTGGAAAGCACGCATAA
AACATTGTACCGACCATCGTCGGGGGCTGGAGGGGCAAGGGAGGGAGGGA
GGGAGGATGGGAGGGGGAAGCATTTGACTATGGTGGATGATATTGTGGGG
CAGTTGACGCGGGCTGGGTGGTTGACGGACAGTGTGTTTTTCCCACATAC
CCAAAATAGGATTAGCTTTGAAGGGGGCGCGATTCAAGGAGTGCCCTTGT
CGTCATCTGACAGCAATAAAAAGGGAGCATGA

protein sequence of jgi.p|Nanoce1779_2|533736

>mRNA_9535-protein ID=mRNA_9535-protein|Name=jgi.p|Nanoce1779_2|533736|organism=Nannochloropsis oceanica|type=polypeptide|length=494bp
MAEKSKDKETEESTTTSSTTNSKAYHRIDPPPEVLSLRLLAEDGLRALLP
RGYPRSVQKGYAEYVKLQMTASLASSAIGVLSTQSLLYAMGLGAGAIPLA
AALNWIIKDGIGQVGGIIFASVVNDRFDANPKRWKMVATISLDLSCALEL
LAPLAPGSFLAIASLANVGKNVCFLSASASRAAIHNSFAKRENLADITAK
AGSQFIVTSILGTGLGIALSTALGSSWMALAPICAGLSFVHISCNYLSLR
HVCLNTINAERMELIMQHYVLTGRIPAPGDISPIERFMTPAIYDTVAPSA
LVARLPSLRMGRHLDEVASLEQLPRLARLFEKEKYVLNAKGRRGDGTATV
DVLMKEEANVHDVLKACVHSYYVRKEAGREGGWKAPRVQSAWARLMEKKE
VERSDTWLIDLVESTHKTLYRPSSGAGGAREGGREDGRGKHLTMVDDIVG
QLTRAGWLTDSVFFPHTQNRISFEGGAIQGVPLSSSDSNKKGA*

mRNA from alignment at scaffold_44:37174..38655+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9535 ID=mRNA_9535|Name=jgi.p|Nanoce1779_2|533736|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp|location=Sequence derived from alignment at scaffold_44:37174..38655+ (Nannochloropsis oceanica)
ATGGCCGAGAAATCCAAAGACAAGGAAACGGAGGAGAGCACCACCACTAG
CAGCACCACAAATAGCAAGGCATATCACCGTATCGACCCTCCCCCCGAAG
TCCTTTCCCTCCGCCTTCTGGCCGAAGACGGCCTCCGCGCCTTGCTTCCA
AGAGGCTACCCACGCTCGGTCCAAAAAGGGTACGCAGAATATGTCAAACT
TCAAATGACAGCTTCCCTGGCCAGCTCCGCCATTGGTGTGCTCTCCACTC
AATCCCTCCTCTACGCCATGGGCCTGGGCGCCGGCGCCATCCCCCTCGCC
GCGGCCCTTAACTGGATCATAAAAGACGGGATCGGACAAGTCGGCGGCAT
CATATTCGCCAGTGTCGTGAACGACCGATTCGACGCGAATCCCAAACGCT
GGAAAATGGTCGCCACGATTTCCCTTGACCTCTCCTGCGCACTCGAGCTC
CTTGCGCCTCTCGCCCCAGGGTCCTTCCTCGCCATCGCCTCCCTCGCCAA
CGTCGGCAAAAACGTATGTTTCCTCTCCGCCTCCGCCTCGCGCGCGGCCA
TCCACAACTCCTTCGCCAAACGGGAGAATCTCGCCGACATCACCGCAAAA
GCTGGTTCTCAATTCATAGTCACTTCAATCCTCGGCACTGGTCTGGGTAT
CGCCCTCTCCACCGCACTAGGCTCTTCCTGGATGGCGCTCGCTCCCATCT
GTGCAGGGCTGTCTTTTGTCCACATTTCTTGTAACTACCTATCCCTACGC
CACGTTTGCCTCAACACAATCAACGCCGAGAGGATGGAGTTGATCATGCA
GCACTACGTCCTCACAGGCCGCATCCCCGCCCCGGGCGACATATCTCCAA
TCGAACGGTTTATGACCCCCGCCATCTATGACACAGTGGCCCCTTCCGCA
TTAGTGGCGCGCTTGCCTTCCTTGAGGATGGGGAGGCACTTAGACGAGGT
GGCAAGCCTTGAGCAGCTGCCAAGGTTGGCCCGGTTGTTCGAAAAGGAGA
AATATGTTTTGAATGCGAAGGGAAGGAGGGGGGATGGGACGGCGACCGTT
GATGTGTTGATGAAGGAAGAGGCAAATGTCCACGACGTGTTGAAGGCGTG
CGTGCATTCGTACTACGTCAGAAAGGAGGCAGGGAGGGAGGGAGGGTGGA
AGGCCCCTCGGGTGCAGTCGGCGTGGGCGAGGTTGATGGAGAAGAAGGAG
GTGGAACGGTCAGATACGTGGCTCATTGACCTCGTGGAAAGCACGCATAA
AACATTGTACCGACCATCGTCGGGGGCTGGAGGGGCAAGGGAGGGAGGGA
GGGAGGATGGGAGGGGGAAGCATTTGACTATGGTGGATGATATTGTGGGG
CAGTTGACGCGGGCTGGGTGGTTGACGGACAGTGTGTTTTTCCCACATAC
CCAAAATAGGATTAGCTTTGAAGGGGGCGCGATTCAAGGAGTGCCCTTGT
CGTCATCTGACAGCAATAAAAAGGGAGCATGA

Coding sequence (CDS) from alignment at scaffold_44:37174..38655+

>mRNA_9535 ID=mRNA_9535|Name=jgi.p|Nanoce1779_2|533736|organism=Nannochloropsis oceanica|type=CDS|length=1482bp|location=Sequence derived from alignment at scaffold_44:37174..38655+ (Nannochloropsis oceanica)
ATGGCCGAGAAATCCAAAGACAAGGAAACGGAGGAGAGCACCACCACTAG
CAGCACCACAAATAGCAAGGCATATCACCGTATCGACCCTCCCCCCGAAG
TCCTTTCCCTCCGCCTTCTGGCCGAAGACGGCCTCCGCGCCTTGCTTCCA
AGAGGCTACCCACGCTCGGTCCAAAAAGGGTACGCAGAATATGTCAAACT
TCAAATGACAGCTTCCCTGGCCAGCTCCGCCATTGGTGTGCTCTCCACTC
AATCCCTCCTCTACGCCATGGGCCTGGGCGCCGGCGCCATCCCCCTCGCC
GCGGCCCTTAACTGGATCATAAAAGACGGGATCGGACAAGTCGGCGGCAT
CATATTCGCCAGTGTCGTGAACGACCGATTCGACGCGAATCCCAAACGCT
GGAAAATGGTCGCCACGATTTCCCTTGACCTCTCCTGCGCACTCGAGCTC
CTTGCGCCTCTCGCCCCAGGGTCCTTCCTCGCCATCGCCTCCCTCGCCAA
CGTCGGCAAAAACGTATGTTTCCTCTCCGCCTCCGCCTCGCGCGCGGCCA
TCCACAACTCCTTCGCCAAACGGGAGAATCTCGCCGACATCACCGCAAAA
GCTGGTTCTCAATTCATAGTCACTTCAATCCTCGGCACTGGTCTGGGTAT
CGCCCTCTCCACCGCACTAGGCTCTTCCTGGATGGCGCTCGCTCCCATCT
GTGCAGGGCTGTCTTTTGTCCACATTTCTTGTAACTACCTATCCCTACGC
CACGTTTGCCTCAACACAATCAACGCCGAGAGGATGGAGTTGATCATGCA
GCACTACGTCCTCACAGGCCGCATCCCCGCCCCGGGCGACATATCTCCAA
TCGAACGGTTTATGACCCCCGCCATCTATGACACAGTGGCCCCTTCCGCA
TTAGTGGCGCGCTTGCCTTCCTTGAGGATGGGGAGGCACTTAGACGAGGT
GGCAAGCCTTGAGCAGCTGCCAAGGTTGGCCCGGTTGTTCGAAAAGGAGA
AATATGTTTTGAATGCGAAGGGAAGGAGGGGGGATGGGACGGCGACCGTT
GATGTGTTGATGAAGGAAGAGGCAAATGTCCACGACGTGTTGAAGGCGTG
CGTGCATTCGTACTACGTCAGAAAGGAGGCAGGGAGGGAGGGAGGGTGGA
AGGCCCCTCGGGTGCAGTCGGCGTGGGCGAGGTTGATGGAGAAGAAGGAG
GTGGAACGGTCAGATACGTGGCTCATTGACCTCGTGGAAAGCACGCATAA
AACATTGTACCGACCATCGTCGGGGGCTGGAGGGGCAAGGGAGGGAGGGA
GGGAGGATGGGAGGGGGAAGCATTTGACTATGGTGGATGATATTGTGGGG
CAGTTGACGCGGGCTGGGTGGTTGACGGACAGTGTGTTTTTCCCACATAC
CCAAAATAGGATTAGCTTTGAAGGGGGCGCGATTCAAGGAGTGCCCTTGT
CGTCATCTGACAGCAATAAAAAGGGAGCATGA

Synonyms

Publications