jgi.p|Nanoce1779_2|609072, mRNA_9533 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609072
Unique Name	mRNA_9533
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2203
Alignment location	scaffold_44:32607..34924 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	609158
Track	FilteredModels2
ProteinId	609072

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:32607..34924 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609072	gene_9533	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609072	mRNA_9533-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9533	CDS_9533	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:32607..34924+
coding sequence from alignment at scaffold_44:32607..34924+

mRNA sequence

>mRNA_9533 ID=mRNA_9533|Name=jgi.p|Nanoce1779_2|609072|organism=Nannochloropsis oceanica|type=mRNA|length=2203bp
AGGAAGAGGCGGTGTTCTCGCTGTCGCTGCCTGGCTTGGCTCTTGGCCGG
CATCGAACATGACGTGGGTTCCCAGTGGCAAGCCTCTTCTTCCACCACCT
GGCCCCCCGCCGGCCGAGGCACATCACGCGCCTCCCAGAAGAAGATGGGG
AGCTGGATTCTTCTTAGCCATGACTCTATCGTGCTCTCTATGGCCTTTGG
GAGTGCTGGGGCAACTCGGAGGCAGCAGTGACGACTCGCACGGCCCACAG
CTCCTTCAAGAGGACTTGGACATGGCCTCCTTCCTCGGTATTGACCTCGG
CAGTGGTGAGAATGCCGACGCATTTGCCTCCTTCCTAGATCTGGGCAGCA
GCAGCAGCAGCAGCAGCAGCACCAATTACGACACGAGCGCCGAAACTGTA
GATTCCTTTCCCGGCAAGAGCAGTTCTACAAGCGGCGACGACGGGATCGA
GAACCAAGCCTCCTTGCTTGGCCTAGCCGGCCTGGACAGCAGCAGCACTG
ATATTGACTCTGAGTCCCCAGAAAAACTCTCCTTCTTTGGCCATGGCAAT
GAGGACAGCGATAGAGGGGCCGATTCCAAGTCCAAGACCGCACTAGATCA
CGGCCCCACCCCAGCGGAGACGGATCCCCTCTATTTATCCCGGGCTAAAA
GCATCCGCGAGGCCATTGGCCGGGATCCTGTGATCGTTTTGAATGGGCTA
GGTGGCGCAGGATTACAATTTAGGTTGCGGGGGGCGAAACCTTCGTATTC
TTACTGTCGCACCTGGTATTTACGCTTCCATACCGCGTGGATCTTGCCGA
GGGTTGTGATTCCTCCGATAGCGAGATGCTTGATGGATTTCATCACGCCT
ATCTACGACTCGATGACACAAACATTTAGTAATAAGCCAGGAGTAGCGGT
GAAGGTGACTGGCTTTGGGCAGATTCTTTCGTTGGAAAACTTAGGGCCGT
CGATTTTGCCGCTTCGGAATTTTGATTACATCAGAGGCTTTGTTAAGTTT
ATGATTAGTGAACTAGGGTACGGGCCTGGCCTTGACCTATTTGCAGCGCC
TTATGACTGGAGGTACACGCCTGATGTGCTCAAGGAACAGGGATACTTCC
GGGACCTGCAAGCCCTCGTTGAAACCGCATATATCACTTCAGGTAATCGT
CGCGTGCACCTAATGGGACATTCGTTGGGGGGGGTCGTCGCCCTGGCCTT
CCTGAATGACGTGCCGTTAGAATGGAAGCAGATCTACATCAAATCCTACC
TCCCCGTCGGCAGTCCCTTCGGTGGCACGGTTGTCAATGTCATGGGATCA
TGCTCCGGGTATAATCTCGGCCTCCCCCTCGCTCCTGCCGACCTGCGAGA
TTTCGAGGCCCAAGCACCGACGGGCCCCTGGCTCTTCCCCCGGCCCTCAC
TGTGGCCCCCAGATGAGATTCTCGTACAGACACCCAATCAAAGCTATTCT
GCACATGATTACGAACGCCTGCTGCGTGATTTAGGCCTGGGTAAAGCTGC
TCTCCCGGTGTACAAGCATGTTGCTCCGCTCTATCTCGAGACGCTTATCC
CCCCCGGCATCGACGTCCACGTCATCCACTCGACTGGCAACCCCACCATC
GCCTCCCTCATCTACAACCAGTCCTTCAATGGAAGCATGGACCAAATTCC
TCTCCCTCCCTTCCACGTCTTTGGCCCTGGTGATGGCACGGTCCCCGAAA
GGAGCTTGCTGAGGCCGTTCAATGAGTGGCATCCCCCCGGGAAGGAGGGA
GGGAAGGAGGGAGGGTGGGTGTTGACGCACCATGTGATAGAAGGGGTGAA
CCACATGGATATTTGCAATTTTCGAGGCTTTTTCAGGGTCTTGACCGATA
TATTGGGGAACCATGTGGACAGAACCTTGCGGCCGGAATCGGACGCGCTG
GAAACGTCACCCGACGCCTGGAAGACGAGAATGAAGCAGCGCTGGGCGCC
GATCGAGGCGGCCTTGGATGCCGCAGAGGAGATGGTCTTTGGTCCTTAGG
CTTCAGGATCAGGGACGAGAAGGAGACAAGGGGAGTGGGGTGCATGTGAG
GATTGGGCTTGTGCTTGCACTGCTGGCCTTGTCTATCTTGTATTTTAGCG
AGGGAGACAGACTGCTCCATGTAGATGTAGGGCTTGGTCGATAAAATAAA
TGAATGCTAAATGTAAAGGTCCGAGCGAAATGTAATGGTCAGAGAGTTCC
CAC

protein sequence of jgi.p|Nanoce1779_2|609072

>mRNA_9533-protein ID=mRNA_9533-protein|Name=jgi.p|Nanoce1779_2|609072|organism=Nannochloropsis oceanica|type=polypeptide|length=647bp
MTWVPSGKPLLPPPGPPPAEAHHAPPRRRWGAGFFLAMTLSCSLWPLGVL
GQLGGSSDDSHGPQLLQEDLDMASFLGIDLGSGENADAFASFLDLGSSSS
SSSSTNYDTSAETVDSFPGKSSSTSGDDGIENQASLLGLAGLDSSSTDID
SESPEKLSFFGHGNEDSDRGADSKSKTALDHGPTPAETDPLYLSRAKSIR
EAIGRDPVIVLNGLGGAGLQFRLRGAKPSYSYCRTWYLRFHTAWILPRVV
IPPIARCLMDFITPIYDSMTQTFSNKPGVAVKVTGFGQILSLENLGPSIL
PLRNFDYIRGFVKFMISELGYGPGLDLFAAPYDWRYTPDVLKEQGYFRDL
QALVETAYITSGNRRVHLMGHSLGGVVALAFLNDVPLEWKQIYIKSYLPV
GSPFGGTVVNVMGSCSGYNLGLPLAPADLRDFEAQAPTGPWLFPRPSLWP
PDEILVQTPNQSYSAHDYERLLRDLGLGKAALPVYKHVAPLYLETLIPPG
IDVHVIHSTGNPTIASLIYNQSFNGSMDQIPLPPFHVFGPGDGTVPERSL
LRPFNEWHPPGKEGGKEGGWVLTHHVIEGVNHMDICNFRGFFRVLTDILG
NHVDRTLRPESDALETSPDAWKTRMKQRWAPIEAALDAAEEMVFGP*

mRNA from alignment at scaffold_44:32607..34924+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9533 ID=mRNA_9533|Name=jgi.p|Nanoce1779_2|609072|organism=Nannochloropsis oceanica|type=mRNA|length=2318bp|location=Sequence derived from alignment at scaffold_44:32607..34924+ (Nannochloropsis oceanica)
AGGAAGAGGCGGTGTTCTCGCTGTCGCTGCCTGGCTTGGCTCTTGGCCGG
CATCGAACATGACGTGGGTTCCCAGTGGCAAGCCTCTTCTTCCACCACCT
GGCCCCCCGCCGGCCGAGGCACATCACGCGCCTCCCAGAAGAAGATGGGG
AGCTGGATTCTTCTTAGCCATGACTCTATCGTGCTCTCTATGGCCTTTGG
GAGTGCTGGGGCAACTCGGAGGCAGCAGTGACGACTCGCACGGCCCACAG
CTCCTTCAAGAGGACTTGGACATGGCCTCCTTCCTCGGTATTGACCTCGG
CAGTGGTGAGAATGCCGACGCATTTGCCTCCTTCCTAGATCTGGGCAGCA
GCAGCAGCAGCAGCAGCAGCACCAATTACGACACGAGCGCCGAAACTGTA
GATTCCTTTCCCGGCAAGAGCAGTTCTACAAGCGGCGACGACGGGATCGA
GAACCAAGCCTCCTTGCTTGGCCTAGCCGGCCTGGACAGCAGCAGCACTG
ATATTGACTCTGAGTCCCCAGAAAAACTCTCCTTCTTTGGCCATGGCAAT
GAGGACAGCGATAGAGGGGCCGATTCCAAGTCCAAGACCGCACTAGATCA
CGGCCCCACCCCAGCGGAGACGGATCCCCTCTATTTATCCCGGGCTAAAA
GCATCCGCGAGGCCATTGGCCGGGATCCTGTGATCGTTTTGAATGGGCTA
GGTGGCGCAGGATTACAATTTAGGTTGCGGGGGGCGAAACCTTCGTATTC
TTACTGTCGCACCTGGTATTTACGCTTCCATACCGCGTGGATCTTGCCGA
GGGTTGTGATTCCTCCGATAGCGAGATGCTTGATGGATTTCATCACGCCT
ATCTACGACTCGATGACACAAACATTTAGTAATAAGCCAGGAGTAGCGGT
GAAGGTGACTGGCTTTGGGCAGATTCTTTCGTTGGAAAACTTAGGGCCGT
CGATTTTGCCGCTTCGGAATTTTGATTACATCAGAGGCTTTGTTAAGTTT
ATGATTAGTGAACTAGGGTACGGGCCTGGCCTTGACCTATTTGCAGCGCC
TTATGACTGGAGGTACACGCCTGATGTGCTCAAGGAACAGGTGAATCCCT
CTTCCCTTGTTAACTTCTTCCTCCACCTTCTGAAGCTCCTGAAGTTCTCA
CCTCCCTCCTCTCTCCTCTCTCCCTTCTCTCCCTTCCTCTCCCTTTCATC
CCTAGGGATACTTCCGGGACCTGCAAGCCCTCGTTGAAACCGCATATATC
ACTTCAGGTAATCGTCGCGTGCACCTAATGGGACATTCGTTGGGGGGGGT
CGTCGCCCTGGCCTTCCTGAATGACGTGCCGTTAGAATGGAAGCAGATCT
ACATCAAATCCTACCTCCCCGTCGGCAGTCCCTTCGGTGGCACGGTTGTC
AATGTCATGGGATCATGCTCCGGGTATAATCTCGGCCTCCCCCTCGCTCC
TGCCGACCTGCGAGATTTCGAGGCCCAAGCACCGACGGGCCCCTGGCTCT
TCCCCCGGCCCTCACTGTGGCCCCCAGATGAGATTCTCGTACAGACACCC
AATCAAAGCTATTCTGCACATGATTACGAACGCCTGCTGCGTGATTTAGG
CCTGGGTAAAGCTGCTCTCCCGGTGTACAAGCATGTTGCTCCGCTCTATC
TCGAGACGCTTATCCCCCCCGGCATCGACGTCCACGTCATCCACTCGACT
GGCAACCCCACCATCGCCTCCCTCATCTACAACCAGTCCTTCAATGGAAG
CATGGACCAAATTCCTCTCCCTCCCTTCCACGTCTTTGGCCCTGGTGATG
GCACGGTCCCCGAAAGGAGCTTGCTGAGGCCGTTCAATGAGTGGCATCCC
CCCGGGAAGGAGGGAGGGAAGGAGGGAGGGTGGGTGTTGACGCACCATGT
GATAGAAGGGGTGAACCACATGGATATTTGCAATTTTCGAGGCTTTTTCA
GGGTCTTGACCGATATATTGGGGAACCATGTGGACAGAACCTTGCGGCCG
GAATCGGACGCGCTGGAAACGTCACCCGACGCCTGGAAGACGAGAATGAA
GCAGCGCTGGGCGCCGATCGAGGCGGCCTTGGATGCCGCAGAGGAGATGG
TCTTTGGTCCTTAGGCTTCAGGATCAGGGACGAGAAGGAGACAAGGGGAG
TGGGGTGCATGTGAGGATTGGGCTTGTGCTTGCACTGCTGGCCTTGTCTA
TCTTGTATTTTAGCGAGGGAGACAGACTGCTCCATGTAGATGTAGGGCTT
GGTCGATAAAATAAATGAATGCTAAATGTAAAGGTCCGAGCGAAATGTAA
TGGTCAGAGAGTTCCCAC

Coding sequence (CDS) from alignment at scaffold_44:32607..34924+

>mRNA_9533 ID=mRNA_9533|Name=jgi.p|Nanoce1779_2|609072|organism=Nannochloropsis oceanica|type=CDS|length=3882bp|location=Sequence derived from alignment at scaffold_44:32607..34924+ (Nannochloropsis oceanica)
ATGACGTGGGTTCCCAGTGGCAAGCCTCTTCTTCCACCACCTGGCCCCCC
GCCGGCCGAGGCACATCACGCGCCTCCCAGAAGAAGATGGGGAGCTGGAT
TCTTCTTAGCCATGACTCTATCGTGCTCTCTATGGCCTTTGGGAGTGCTG
GGGCAACTCGGAGGCAGCAGTGACGACTCGCACGGCCCACAGCTCCTTCA
AGAGGACTTGGACATGGCCTCCTTCCTCGGTATTGACCTCGGCAGTGGTG
AGAATGCCGACGCATTTGCCTCCTTCCTAGATCTGGGCAGCAGCAGCAGC
AGCAGCAGCAGCACCAATTACGACACGAGCGCCGAAACTGTAGATTCCTT
TCCCGGCAAGAGCAGTTCTACAAGCGGCGACGACGGGATCGAGAACCAAG
CCTCCTTGCTTGGCCTAGCCGGCCTGGACAGCAGCAGCACTGATATTGAC
TCTGAGTCCCCAGAAAAACTCTCCTTCTTTGGCCATGGCAATGAGGACAG
CGATAGAGGGGCCGATTCCAAGTCCAAGACCGCACTAGATCACGGCCCCA
CCCCAGCGGAGACGGATCCCCTCTATTTATCCCGGGCTAAAAGCATCCGC
GAGGCCATTGGCCGGGATCCTGTGATCGTTTTGAATGGGCTAGGTGGCGC
AGGATTACAATTTAGGTTGCGGGGGGCGAAACCTTCGTATTCTTACTGTC
GCACCTGGTATTTACGCTTCCATACCGCGTGGATCTTGCCGAGGGTTGTG
ATTCCTCCGATAGCGAGATGCTTGATGGATTTCATCACGCCTATCTACGA
CTCGATGACACAAACATTTAGTAATAAGCCAGGAGTAGCGGTGAAGGTGA
CTGGCTTTGGGCAGATTCTTTCGTTGGAAAACTTAGGGCCGTCGATTTTG
CCGCTTCGGAATTTTGATTACATCAGAGGCTTTGTTAAGTTTATGATTAG
TGAACTAGGGTACGGGCCTGGCCTTGACCTATTTGCAGCGCCTTATGACT
GGAGGTACACGCCTGATGTGCTCAAGGAACAGGGATACTTCCGGGACCTG
CAAGCCCTCGTTGAAACCGCATATATCACTTCAGGTAATCGTCGCGTGCA
CCTAATGGGACATTCGTTGGGGGGGGTCGTCGCCCTGGCCTTCCTGAATG
ACGTGCCGTTAGAATGGAAGCAGATCTACATCAAATCCTACCTCCCCGTC
GGCAGTCCCTTCGGTGGCACGGTTGTCAATGTCATGGGATCATGCTCCGG
GTATAATCTCGGCCTCCCCCTCGCTCCTGCCGACCTGCGAGATTTCGAGG
CCCAAGCACCGACGGGCCCCTGGCTCTTCCCCCGGCCCTCACTGTGGCCC
CCAGATGAGATTCTCGTACAGACACCCAATCAAAGCTATTCTGCACATGA
TTACGAACGCCTGCTGCGTGATTTAGGCCTGGGTAAAGCTGCTCTCCCGG
TGTACAAGCATGTTGCTCCGCTCTATCTCGAGACGCTTATCCCCCCCGGC
ATCGACGTCCACGTCATCCACTCGACTGGCAACCCCACCATCGCCTCCCT
CATCTACAACCAGTCCTTCAATGGAAGCATGGACCAAATTCCTCTCCCTC
CCTTCCACGTCTTTGGCCCTGGTGATGGCACGGTCCCCGAAAGGAGCTTG
CTGAGGCCGTTCAATGAGTGGCATCCCCCCGGGAAGGAGGGAGGGAAGGA
GGGAGGGTGGGTGTTGACGCACCATGTGATAGAAGGGGTGAACCACATGG
ATATTTGCAATTTTCGAGGCTTTTTCAGGGTCTTGACCGATATATTGGGG
AACCATGTGGACAGAACCTTGCGGCCGGAATCGGACGCGCTGGAAACGTC
ACCCGACGCCTGGAAGACGAGAATGAAGCAGCGCTGGGCGCCGATCGAGG
CGGCCTTGGATGCCGCAGAGGAGATGGTCTTTGGTCCTTAGATGACGTGG
GTTCCCAGTGGCAAGCCTCTTCTTCCACCACCTGGCCCCCCGCCGGCCGA
GGCACATCACGCGCCTCCCAGAAGAAGATGGGGAGCTGGATTCTTCTTAG
CCATGACTCTATCGTGCTCTCTATGGCCTTTGGGAGTGCTGGGGCAACTC
GGAGGCAGCAGTGACGACTCGCACGGCCCACAGCTCCTTCAAGAGGACTT
GGACATGGCCTCCTTCCTCGGTATTGACCTCGGCAGTGGTGAGAATGCCG
ACGCATTTGCCTCCTTCCTAGATCTGGGCAGCAGCAGCAGCAGCAGCAGC
AGCACCAATTACGACACGAGCGCCGAAACTGTAGATTCCTTTCCCGGCAA
GAGCAGTTCTACAAGCGGCGACGACGGGATCGAGAACCAAGCCTCCTTGC
TTGGCCTAGCCGGCCTGGACAGCAGCAGCACTGATATTGACTCTGAGTCC
CCAGAAAAACTCTCCTTCTTTGGCCATGGCAATGAGGACAGCGATAGAGG
GGCCGATTCCAAGTCCAAGACCGCACTAGATCACGGCCCCACCCCAGCGG
AGACGGATCCCCTCTATTTATCCCGGGCTAAAAGCATCCGCGAGGCCATT
GGCCGGGATCCTGTGATCGTTTTGAATGGGCTAGGTGGCGCAGGATTACA
ATTTAGGTTGCGGGGGGCGAAACCTTCGTATTCTTACTGTCGCACCTGGT
ATTTACGCTTCCATACCGCGTGGATCTTGCCGAGGGTTGTGATTCCTCCG
ATAGCGAGATGCTTGATGGATTTCATCACGCCTATCTACGACTCGATGAC
ACAAACATTTAGTAATAAGCCAGGAGTAGCGGTGAAGGTGACTGGCTTTG
GGCAGATTCTTTCGTTGGAAAACTTAGGGCCGTCGATTTTGCCGCTTCGG
AATTTTGATTACATCAGAGGCTTTGTTAAGTTTATGATTAGTGAACTAGG
GTACGGGCCTGGCCTTGACCTATTTGCAGCGCCTTATGACTGGAGGTACA
CGCCTGATGTGCTCAAGGAACAGGGATACTTCCGGGACCTGCAAGCCCTC
GTTGAAACCGCATATATCACTTCAGGTAATCGTCGCGTGCACCTAATGGG
ACATTCGTTGGGGGGGGTCGTCGCCCTGGCCTTCCTGAATGACGTGCCGT
TAGAATGGAAGCAGATCTACATCAAATCCTACCTCCCCGTCGGCAGTCCC
TTCGGTGGCACGGTTGTCAATGTCATGGGATCATGCTCCGGGTATAATCT
CGGCCTCCCCCTCGCTCCTGCCGACCTGCGAGATTTCGAGGCCCAAGCAC
CGACGGGCCCCTGGCTCTTCCCCCGGCCCTCACTGTGGCCCCCAGATGAG
ATTCTCGTACAGACACCCAATCAAAGCTATTCTGCACATGATTACGAACG
CCTGCTGCGTGATTTAGGCCTGGGTAAAGCTGCTCTCCCGGTGTACAAGC
ATGTTGCTCCGCTCTATCTCGAGACGCTTATCCCCCCCGGCATCGACGTC
CACGTCATCCACTCGACTGGCAACCCCACCATCGCCTCCCTCATCTACAA
CCAGTCCTTCAATGGAAGCATGGACCAAATTCCTCTCCCTCCCTTCCACG
TCTTTGGCCCTGGTGATGGCACGGTCCCCGAAAGGAGCTTGCTGAGGCCG
TTCAATGAGTGGCATCCCCCCGGGAAGGAGGGAGGGAAGGAGGGAGGGTG
GGTGTTGACGCACCATGTGATAGAAGGGGTGAACCACATGGATATTTGCA
ATTTTCGAGGCTTTTTCAGGGTCTTGACCGATATATTGGGGAACCATGTG
GACAGAACCTTGCGGCCGGAATCGGACGCGCTGGAAACGTCACCCGACGC
CTGGAAGACGAGAATGAAGCAGCGCTGGGCGCCGATCGAGGCGGCCTTGG
ATGCCGCAGAGGAGATGGTCTTTGGTCCTTAG

Synonyms

Publications