jgi.p|Nanoce1779_2|609058, mRNA_9530 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609058
Unique NamemRNA_9530
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length507
Alignment locationscaffold_44:22413..23017 +

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Properties
Property NameValue
TranscriptId609144
TrackFilteredModels2
ProteinId609058
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:22413..23017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609058gene_9530Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609058mRNA_9530-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9530CDS_9530Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9530 ID=mRNA_9530|Name=jgi.p|Nanoce1779_2|609058|organism=Nannochloropsis oceanica|type=mRNA|length=507bp
ACAGCAACTCCAACCATGCCCTTCGTCAACATCAGGACCTCTGCTCCCTT
GGATGCCGCCGGTATCAAGGCTGTGACCGACGCGGCGCACAAAGCGATCA
ATGAAGTCCTTAGTAAGCCCGATGAGTACATTGCAATTAATGTAGATGTC
TGCCCTAACCTACAATTTGGCGGGACCAAGGCCCCGGCGGCCATGATAAG
TGTGCATTCCATCGGATACGGTGGGGCGAATGCTAAGACGAATAAGGAGG
CTTTGCTGAAGTCCTTGGGGGAGGCGATGAGGACGGCGGGCAACGTGCCG
GGCGATCGCTTGTTTGTATCCTTTGAGGATGTGCACAAGGATTTTTGGGG
ATTTAATGGACAGCTCTTCTCCACCATTTTTGGTTAATATGTTTGAAAAT
GTCCATGTTCGATCTTTCGAGCGTGCAGCTGTACCGCAACGAAATGAGAG
GGAGGAAAAAGAAACAGGAAAGAGTGGAGAAAAAAATGATACATAACAAT
GTGCCCA
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protein sequence of jgi.p|Nanoce1779_2|609058

>mRNA_9530-protein ID=mRNA_9530-protein|Name=jgi.p|Nanoce1779_2|609058|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MPFVNIRTSAPLDAAGIKAVTDAAHKAINEVLSKPDEYIAINVDVCPNLQ
FGGTKAPAAMISVHSIGYGGANAKTNKEALLKSLGEAMRTAGNVPGDRLF
VSFEDVHKDFWGFNGQLFSTIFG*
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mRNA from alignment at scaffold_44:22413..23017+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9530 ID=mRNA_9530|Name=jgi.p|Nanoce1779_2|609058|organism=Nannochloropsis oceanica|type=mRNA|length=605bp|location=Sequence derived from alignment at scaffold_44:22413..23017+ (Nannochloropsis oceanica)
ACAGCAACTCCAACCATGCCCTTCGTCAACATCAGGACCTCTGCTCCCTT
GGATGCCGCCGGTATCAAGGCTGTGACCGACGCGGCGCACAAAGCGATCA
ATGAAGTCCTTAGTAAGCCCGATGAGTACATTGCAATTAATGTAGATGTC
TGCCCTAACCTACAATTTGGCGGGACCAAGGCCCCGGCGGCCATGATAAG
TGTGCATTCCATCGGATACGGTGGGGCGAATGCTAAGACGAATAAGGAGG
CTTTGCTGAAGTCCTTGGGGGAGGCGATGAGGACGGCGGGCAACGTGCCG
GGCGATCGCTTGTTTGTATCCTTTGAGGATGTGCACAAGGATTTTTGGGG
ATTTAATGGACAGCTCTTCTCCACCATTTTTGGTACGTAAAAGGAGGGTG
TTTCTTGTGACTCGAGACCTTTCCCATTGGATTACCTGGAAGACTAATCG
CCTTCGCTCACAACACTTGGCACACTACAGGTTAATATGTTTGAAAATGT
CCATGTTCGATCTTTCGAGCGTGCAGCTGTACCGCAACGAAATGAGAGGG
AGGAAAAAGAAACAGGAAAGAGTGGAGAAAAAAATGATACATAACAATGT
GCCCA
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Coding sequence (CDS) from alignment at scaffold_44:22413..23017+

>mRNA_9530 ID=mRNA_9530|Name=jgi.p|Nanoce1779_2|609058|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_44:22413..23017+ (Nannochloropsis oceanica)
ATGCCCTTCGTCAACATCAGGACCTCTGCTCCCTTGGATGCCGCCGGTAT
CAAGGCTGTGACCGACGCGGCGCACAAAGCGATCAATGAAGTCCTTAGTA
AGCCCGATGAGTACATTGCAATTAATGTAGATGTCTGCCCTAACCTACAA
TTTGGCGGGACCAAGGCCCCGGCGGCCATGATAAGTGTGCATTCCATCGG
ATACGGTGGGGCGAATGCTAAGACGAATAAGGAGGCTTTGCTGAAGTCCT
TGGGGGAGGCGATGAGGACGGCGGGCAACGTGCCGGGCGATCGCTTGTTT
GTATCCTTTGAGGATGTGCACAAGGATTTTTGGGGATTTAATGGACAGCT
CTTCTCCACCATTTTTGGTTAAATGCCCTTCGTCAACATCAGGACCTCTG
CTCCCTTGGATGCCGCCGGTATCAAGGCTGTGACCGACGCGGCGCACAAA
GCGATCAATGAAGTCCTTAGTAAGCCCGATGAGTACATTGCAATTAATGT
AGATGTCTGCCCTAACCTACAATTTGGCGGGACCAAGGCCCCGGCGGCCA
TGATAAGTGTGCATTCCATCGGATACGGTGGGGCGAATGCTAAGACGAAT
AAGGAGGCTTTGCTGAAGTCCTTGGGGGAGGCGATGAGGACGGCGGGCAA
CGTGCCGGGCGATCGCTTGTTTGTATCCTTTGAGGATGTGCACAAGGATT
TTTGGGGATTTAATGGACAGCTCTTCTCCACCATTTTTGGTTAA
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Synonyms
Publications