jgi.p|Nanoce1779_2|609054, mRNA_9528 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609054
Unique Name	mRNA_9528
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2459
Alignment location	scaffold_44:18713..21171 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	609140
Track	FilteredModels2
ProteinId	609054

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:18713..21171 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609054	gene_9528	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609054	mRNA_9528-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9528	CDS_9528	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:18713..21171+
coding sequence from alignment at scaffold_44:18713..21171+

mRNA sequence

>mRNA_9528 ID=mRNA_9528|Name=jgi.p|Nanoce1779_2|609054|organism=Nannochloropsis oceanica|type=mRNA|length=2459bp
AGACACAAAGGTACCGGGAAGACGCCATTCTTGCTGGCGGGTGCACTGGC
CGCAGCCTACACCGTGCCAAACACAGACGTCAGCTGGGCCATGATCACCA
GCATGCCATCAAGGACACCTTTCACCCCTGCGGCGACTCCCTCGACTTCA
AACTTGCTGCGACGACGAAGATACCTGACCCCAAGGCGACAGCCCCTTTT
TCTGGCGGCCACTGTTCTGATGTGTACAGTGAATGCGGCCAGCGGGAAAG
TGCCACCCGTCAGCAGCGGATGGTTTGGCTTTAGCGGGAGCATCAAGGTG
GTGCATGCCCAGAAACAAAAGTTAGCGTCCAGTGCAGCCGGCACCATCTC
TACGACAAGCCCCGGTGCATTTTCCTTCTGGGGTGGAAAGAAGGACGAGT
GCGCGGACAAGAAAACAAGCAGCAACATATCTGCCAAGTCGGCCTCCCCC
TCCTCGTCCTCCTCGTCCTCCTCCTCTTCTTCCTCCTCAAGCACTGATAG
CGCGGAGAAGTGTTTACGTTTGGCGGAGCCAACCTCATTTGATTCTTTTT
CCTATTCCTCCCCCTCCCCCACGCCTACTCCGTCGCAGGGGAGCCACCGC
GGCGGCGCCGACAGCCGCAGCAGCAATGGCAATCACATCTTTGAAGTGGG
ATGGAGCCCATCCTGGTCTTGGGTCGGACAACTGATGGACGAGTGGCAGT
ATCGCGTCAGGAGTCTAGATAGCTACCGGAAGGTGGTGCGAGGACGAATG
GACGCAACCCTGGAGGGGTTCCAGGCTCGCTATGAAGCCGCGTCGAGGGA
TCTAAGGAAGGACGTGAACAAGCAGCTAGCCAAGGCATCGGCCCTACACG
AGGACTACATGGATAAAATTAATCAGCAACAACAGCGGCTGGCAGAGTTG
ACCCGCTCCGAGCTGCGCATTCGTCAGCAGGGATTTAACACTAGCTTGGA
AACGTTTAAGAGGCAGTATGACGACACCTGGGGTCGATTTTCAGGGACGG
TCCGGAAGCTAGGGCCATTCACCAAGACGGAAGTGGCAGAGCAGCAACGA
CGACTTGACGAGGCATTCCAGCAGTTTATGGCCCAGTATTCAAACAGCTC
CGCGGAGGTGCGTAATTACATCGACCGGATGATGAAGTTGTCGGGAGACG
TCTTCCCACGCCTCTCCCTCGAAGATGAACACGTGCTCGGGCGCATTCGG
CGGTTGCGCGAAGAGGAGATGGCTGAGCTCACGCGCTTGGGCAAGAAGCA
GCTGCGGTCTGAGAAGGATAGATTGGAGGGTGTGGTTGAGAGGCTGAGGG
AGCAGCAGGAGAGGATGACGAGGCAGTGGACGGCGCAGAAGGGGGATTTG
GACTTATCGTTTAAGAGACTCCTAGAGCAACTGTTGAGATTTAATCGACT
ATATGACGACCTGATAGCGCGGAAGGAGTCGAATCTGTACGCGGACTCGC
TGAACGACAAGGTGCTACGAAGGGCGCTGGACTGCCTGGACCAGGGGGAG
GCGGATGGGTGGGAGTTCGTGACCGACACGAACGGCGTGAGAGTGCATCG
GAAGAGCCTTCCCTCCATGGATGGGAAGCTCTCAAAGTATTGCTGCGTCA
AGGCCACGGGCATTCTTGCCGCCAGCCCTGCAGACATCCTGACCCTATTT
GAAGACAACACCCGTGTGTCTGAATACAACAAGTTCTACGCCGAAGGCAG
GGATTTGGAGGCCATCAACGATCGCACCAAAGTAGTGTGGGCCGCCTCCC
CCCCCATGTTCTTCTTCAAACCCCGGGATTTTTGCACCGTCGTCCACTAC
CGCAAACTCCAAGACGGCACAGTCGTGGTGGTAAACCGGGCAGTGGAGCA
CCCCGACGCCCCCCGCACCGAAAAATACGTGCGTGCCGAAATCCTCATGG
GCGCCAACATAATCCAGCCTGTGGCGGGGAAACCTCACCAAGCCCTCTTC
ACCATCGTCACGCAAGTGGACCCTGGGATCAAATTTGCTCCTCCTGCGAT
TGTTAACAAAGTCGTCTCATGGGGCCCTCCCACCTTTTTCAAAGAGATCG
AAACGGCCGCTCAAAAGGTCTACAACCGCGTCCCCTCTGCTGTCGTTGAC
GAGCCGGGGACAGGAGCAGTACGGGCACAGACGCTCCCACCACCACAAGA
CCCGGCGACAATATTACCAACACCATCATCATCTTCATCGTCATCAGCGG
CTGTGCCGGTGGCGGTCACGTCTTCTTCTCGACCGTCCCGACCGCCCCCA
CTATTGCCTTCTGAAAGGACGGGCAAACACAAGTGGAATTGAGGAAGGGA
TGAACATGTTGGTGAGATATCTGCACGTCTACGTCTACGGCAGCGAACAA
TCTAGTTAGATTTGTACAGGACATTTCAAACTTTTTTTATATAAGGGGGC
TTTACAAATGAGCCTGAAGAAGAAAAAAGCAAGGTCGAAACTGTGGCAGC
ATTCATTCA

protein sequence of jgi.p|Nanoce1779_2|609054

>mRNA_9528-protein ID=mRNA_9528-protein|Name=jgi.p|Nanoce1779_2|609054|organism=Nannochloropsis oceanica|type=polypeptide|length=734bp
MITSMPSRTPFTPAATPSTSNLLRRRRYLTPRRQPLFLAATVLMCTVNAA
SGKVPPVSSGWFGFSGSIKVVHAQKQKLASSAAGTISTTSPGAFSFWGGK
KDECADKKTSSNISAKSASPSSSSSSSSSSSSSSTDSAEKCLRLAEPTSF
DSFSYSSPSPTPTPSQGSHRGGADSRSSNGNHIFEVGWSPSWSWVGQLMD
EWQYRVRSLDSYRKVVRGRMDATLEGFQARYEAASRDLRKDVNKQLAKAS
ALHEDYMDKINQQQQRLAELTRSELRIRQQGFNTSLETFKRQYDDTWGRF
SGTVRKLGPFTKTEVAEQQRRLDEAFQQFMAQYSNSSAEVRNYIDRMMKL
SGDVFPRLSLEDEHVLGRIRRLREEEMAELTRLGKKQLRSEKDRLEGVVE
RLREQQERMTRQWTAQKGDLDLSFKRLLEQLLRFNRLYDDLIARKESNLY
ADSLNDKVLRRALDCLDQGEADGWEFVTDTNGVRVHRKSLPSMDGKLSKY
CCVKATGILAASPADILTLFEDNTRVSEYNKFYAEGRDLEAINDRTKVVW
AASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRAVEHPDAPRTEKYVRAE
ILMGANIIQPVAGKPHQALFTIVTQVDPGIKFAPPAIVNKVVSWGPPTFF
KEIETAAQKVYNRVPSAVVDEPGTGAVRAQTLPPPQDPATILPTPSSSSS
SSAAVPVAVTSSSRPSRPPPLLPSERTGKHKWN*

mRNA from alignment at scaffold_44:18713..21171+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9528 ID=mRNA_9528|Name=jgi.p|Nanoce1779_2|609054|organism=Nannochloropsis oceanica|type=mRNA|length=2459bp|location=Sequence derived from alignment at scaffold_44:18713..21171+ (Nannochloropsis oceanica)
AGACACAAAGGTACCGGGAAGACGCCATTCTTGCTGGCGGGTGCACTGGC
CGCAGCCTACACCGTGCCAAACACAGACGTCAGCTGGGCCATGATCACCA
GCATGCCATCAAGGACACCTTTCACCCCTGCGGCGACTCCCTCGACTTCA
AACTTGCTGCGACGACGAAGATACCTGACCCCAAGGCGACAGCCCCTTTT
TCTGGCGGCCACTGTTCTGATGTGTACAGTGAATGCGGCCAGCGGGAAAG
TGCCACCCGTCAGCAGCGGATGGTTTGGCTTTAGCGGGAGCATCAAGGTG
GTGCATGCCCAGAAACAAAAGTTAGCGTCCAGTGCAGCCGGCACCATCTC
TACGACAAGCCCCGGTGCATTTTCCTTCTGGGGTGGAAAGAAGGACGAGT
GCGCGGACAAGAAAACAAGCAGCAACATATCTGCCAAGTCGGCCTCCCCC
TCCTCGTCCTCCTCGTCCTCCTCCTCTTCTTCCTCCTCAAGCACTGATAG
CGCGGAGAAGTGTTTACGTTTGGCGGAGCCAACCTCATTTGATTCTTTTT
CCTATTCCTCCCCCTCCCCCACGCCTACTCCGTCGCAGGGGAGCCACCGC
GGCGGCGCCGACAGCCGCAGCAGCAATGGCAATCACATCTTTGAAGTGGG
ATGGAGCCCATCCTGGTCTTGGGTCGGACAACTGATGGACGAGTGGCAGT
ATCGCGTCAGGAGTCTAGATAGCTACCGGAAGGTGGTGCGAGGACGAATG
GACGCAACCCTGGAGGGGTTCCAGGCTCGCTATGAAGCCGCGTCGAGGGA
TCTAAGGAAGGACGTGAACAAGCAGCTAGCCAAGGCATCGGCCCTACACG
AGGACTACATGGATAAAATTAATCAGCAACAACAGCGGCTGGCAGAGTTG
ACCCGCTCCGAGCTGCGCATTCGTCAGCAGGGATTTAACACTAGCTTGGA
AACGTTTAAGAGGCAGTATGACGACACCTGGGGTCGATTTTCAGGGACGG
TCCGGAAGCTAGGGCCATTCACCAAGACGGAAGTGGCAGAGCAGCAACGA
CGACTTGACGAGGCATTCCAGCAGTTTATGGCCCAGTATTCAAACAGCTC
CGCGGAGGTGCGTAATTACATCGACCGGATGATGAAGTTGTCGGGAGACG
TCTTCCCACGCCTCTCCCTCGAAGATGAACACGTGCTCGGGCGCATTCGG
CGGTTGCGCGAAGAGGAGATGGCTGAGCTCACGCGCTTGGGCAAGAAGCA
GCTGCGGTCTGAGAAGGATAGATTGGAGGGTGTGGTTGAGAGGCTGAGGG
AGCAGCAGGAGAGGATGACGAGGCAGTGGACGGCGCAGAAGGGGGATTTG
GACTTATCGTTTAAGAGACTCCTAGAGCAACTGTTGAGATTTAATCGACT
ATATGACGACCTGATAGCGCGGAAGGAGTCGAATCTGTACGCGGACTCGC
TGAACGACAAGGTGCTACGAAGGGCGCTGGACTGCCTGGACCAGGGGGAG
GCGGATGGGTGGGAGTTCGTGACCGACACGAACGGCGTGAGAGTGCATCG
GAAGAGCCTTCCCTCCATGGATGGGAAGCTCTCAAAGTATTGCTGCGTCA
AGGCCACGGGCATTCTTGCCGCCAGCCCTGCAGACATCCTGACCCTATTT
GAAGACAACACCCGTGTGTCTGAATACAACAAGTTCTACGCCGAAGGCAG
GGATTTGGAGGCCATCAACGATCGCACCAAAGTAGTGTGGGCCGCCTCCC
CCCCCATGTTCTTCTTCAAACCCCGGGATTTTTGCACCGTCGTCCACTAC
CGCAAACTCCAAGACGGCACAGTCGTGGTGGTAAACCGGGCAGTGGAGCA
CCCCGACGCCCCCCGCACCGAAAAATACGTGCGTGCCGAAATCCTCATGG
GCGCCAACATAATCCAGCCTGTGGCGGGGAAACCTCACCAAGCCCTCTTC
ACCATCGTCACGCAAGTGGACCCTGGGATCAAATTTGCTCCTCCTGCGAT
TGTTAACAAAGTCGTCTCATGGGGCCCTCCCACCTTTTTCAAAGAGATCG
AAACGGCCGCTCAAAAGGTCTACAACCGCGTCCCCTCTGCTGTCGTTGAC
GAGCCGGGGACAGGAGCAGTACGGGCACAGACGCTCCCACCACCACAAGA
CCCGGCGACAATATTACCAACACCATCATCATCTTCATCGTCATCAGCGG
CTGTGCCGGTGGCGGTCACGTCTTCTTCTCGACCGTCCCGACCGCCCCCA
CTATTGCCTTCTGAAAGGACGGGCAAACACAAGTGGAATTGAGGAAGGGA
TGAACATGTTGGTGAGATATCTGCACGTCTACGTCTACGGCAGCGAACAA
TCTAGTTAGATTTGTACAGGACATTTCAAACTTTTTTTATATAAGGGGGC
TTTACAAATGAGCCTGAAGAAGAAAAAAGCAAGGTCGAAACTGTGGCAGC
ATTCATTCA

Coding sequence (CDS) from alignment at scaffold_44:18713..21171+

>mRNA_9528 ID=mRNA_9528|Name=jgi.p|Nanoce1779_2|609054|organism=Nannochloropsis oceanica|type=CDS|length=2202bp|location=Sequence derived from alignment at scaffold_44:18713..21171+ (Nannochloropsis oceanica)
ATGATCACCAGCATGCCATCAAGGACACCTTTCACCCCTGCGGCGACTCC
CTCGACTTCAAACTTGCTGCGACGACGAAGATACCTGACCCCAAGGCGAC
AGCCCCTTTTTCTGGCGGCCACTGTTCTGATGTGTACAGTGAATGCGGCC
AGCGGGAAAGTGCCACCCGTCAGCAGCGGATGGTTTGGCTTTAGCGGGAG
CATCAAGGTGGTGCATGCCCAGAAACAAAAGTTAGCGTCCAGTGCAGCCG
GCACCATCTCTACGACAAGCCCCGGTGCATTTTCCTTCTGGGGTGGAAAG
AAGGACGAGTGCGCGGACAAGAAAACAAGCAGCAACATATCTGCCAAGTC
GGCCTCCCCCTCCTCGTCCTCCTCGTCCTCCTCCTCTTCTTCCTCCTCAA
GCACTGATAGCGCGGAGAAGTGTTTACGTTTGGCGGAGCCAACCTCATTT
GATTCTTTTTCCTATTCCTCCCCCTCCCCCACGCCTACTCCGTCGCAGGG
GAGCCACCGCGGCGGCGCCGACAGCCGCAGCAGCAATGGCAATCACATCT
TTGAAGTGGGATGGAGCCCATCCTGGTCTTGGGTCGGACAACTGATGGAC
GAGTGGCAGTATCGCGTCAGGAGTCTAGATAGCTACCGGAAGGTGGTGCG
AGGACGAATGGACGCAACCCTGGAGGGGTTCCAGGCTCGCTATGAAGCCG
CGTCGAGGGATCTAAGGAAGGACGTGAACAAGCAGCTAGCCAAGGCATCG
GCCCTACACGAGGACTACATGGATAAAATTAATCAGCAACAACAGCGGCT
GGCAGAGTTGACCCGCTCCGAGCTGCGCATTCGTCAGCAGGGATTTAACA
CTAGCTTGGAAACGTTTAAGAGGCAGTATGACGACACCTGGGGTCGATTT
TCAGGGACGGTCCGGAAGCTAGGGCCATTCACCAAGACGGAAGTGGCAGA
GCAGCAACGACGACTTGACGAGGCATTCCAGCAGTTTATGGCCCAGTATT
CAAACAGCTCCGCGGAGGTGCGTAATTACATCGACCGGATGATGAAGTTG
TCGGGAGACGTCTTCCCACGCCTCTCCCTCGAAGATGAACACGTGCTCGG
GCGCATTCGGCGGTTGCGCGAAGAGGAGATGGCTGAGCTCACGCGCTTGG
GCAAGAAGCAGCTGCGGTCTGAGAAGGATAGATTGGAGGGTGTGGTTGAG
AGGCTGAGGGAGCAGCAGGAGAGGATGACGAGGCAGTGGACGGCGCAGAA
GGGGGATTTGGACTTATCGTTTAAGAGACTCCTAGAGCAACTGTTGAGAT
TTAATCGACTATATGACGACCTGATAGCGCGGAAGGAGTCGAATCTGTAC
GCGGACTCGCTGAACGACAAGGTGCTACGAAGGGCGCTGGACTGCCTGGA
CCAGGGGGAGGCGGATGGGTGGGAGTTCGTGACCGACACGAACGGCGTGA
GAGTGCATCGGAAGAGCCTTCCCTCCATGGATGGGAAGCTCTCAAAGTAT
TGCTGCGTCAAGGCCACGGGCATTCTTGCCGCCAGCCCTGCAGACATCCT
GACCCTATTTGAAGACAACACCCGTGTGTCTGAATACAACAAGTTCTACG
CCGAAGGCAGGGATTTGGAGGCCATCAACGATCGCACCAAAGTAGTGTGG
GCCGCCTCCCCCCCCATGTTCTTCTTCAAACCCCGGGATTTTTGCACCGT
CGTCCACTACCGCAAACTCCAAGACGGCACAGTCGTGGTGGTAAACCGGG
CAGTGGAGCACCCCGACGCCCCCCGCACCGAAAAATACGTGCGTGCCGAA
ATCCTCATGGGCGCCAACATAATCCAGCCTGTGGCGGGGAAACCTCACCA
AGCCCTCTTCACCATCGTCACGCAAGTGGACCCTGGGATCAAATTTGCTC
CTCCTGCGATTGTTAACAAAGTCGTCTCATGGGGCCCTCCCACCTTTTTC
AAAGAGATCGAAACGGCCGCTCAAAAGGTCTACAACCGCGTCCCCTCTGC
TGTCGTTGACGAGCCGGGGACAGGAGCAGTACGGGCACAGACGCTCCCAC
CACCACAAGACCCGGCGACAATATTACCAACACCATCATCATCTTCATCG
TCATCAGCGGCTGTGCCGGTGGCGGTCACGTCTTCTTCTCGACCGTCCCG
ACCGCCCCCACTATTGCCTTCTGAAAGGACGGGCAAACACAAGTGGAATT
GA

Synonyms

Publications