jgi.p|Nanoce1779_2|609046, mRNA_9526 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609046
Unique NamemRNA_9526
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1007
Alignment locationscaffold_44:12834..13840 +

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Properties
Property NameValue
TranscriptId609132
TrackFilteredModels2
ProteinId609046
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:12834..13840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609046gene_9526Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609046mRNA_9526-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9526CDS_9526Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9526 ID=mRNA_9526|Name=jgi.p|Nanoce1779_2|609046|organism=Nannochloropsis oceanica|type=mRNA|length=1007bp
AGCCACTCAATACCTCCTCGACACAGGCGAATGATGGTGCGGCGCCTCCT
CATCACCGCGGCCGCCGCTGCATCGAGCACTATGACGCGTGTCCCCGTTC
TTGCCTGGACAGGCCCCCCACCATCCCACCACACTATCCGGCCATTCACA
AGTAGCATTCTTGCGCCATCGCTCCCCACGATCAAGGCCGGCCGGAAACG
TCCGCGGCCTATCTTTCCAGAAGCGCTTTCTACTGTGGATCGTATGAAAA
AGTTAAGGGCACAGGCGCGATTGGATAAGGGCATGGAGGACGACGACGGC
GGTGAAAGCGACGCATGTGCTGATGCGCCCATCTCGGAACCATCAGTCGA
ATTGCCTATATCCGCTTCTCATCACGCCACCATCGTCAAATGGCTGCAGG
ACCTGGTGATCGGATTCAAACTTTGTCCATGGGCTGGTCCTGCACTGAAT
GCAAATGCCATCAGAATCGTGGTCCACCCCGAAGAATCAAGTCTTGAAGT
GCTCTTCGAGACAGCAATAAAGGAAGCCTCTCTCCTTGCAACCATGCCTG
ATGGGCCAGAGGAACAGAACCTCACGACGCTCATTGGTGTGCCGGGATCA
ACGTTGGCTGACTTTCGGGACTTTCTAGACGTGGCAGGGACAGTTGACGA
CTTCTTAGACGAACTCCAACTTCGCGGGAAAGTGCAGCTTGCCTCTTTCC
ATCCCGATTACAGGTTTGCTGACTCAAGGCCGGGGGCAGACGTGGAAAAT
TTCACGAATCGAAGCCCGATGCCTATCTTGCATTTGTTGAGGGAAGTCGA
GGTGAGTCGCGCATTGGAAGGGTATGTGGGTGATCCTTCACGGATATATG
AACGCAACAAGGCTGTGATGCGGGAGGCGGGTGCTGAGAAATTGCAAAAA
TTGATTGAGGCCTGTAGGCAACACGAATCACTATCAGCATCAACAGATGA
GAGCTCAAGAAAGTGACGAAAGAAAAGGAGGATGAAAAGAAACAAGAGTC
CATGATC
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protein sequence of jgi.p|Nanoce1779_2|609046

>mRNA_9526-protein ID=mRNA_9526-protein|Name=jgi.p|Nanoce1779_2|609046|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MMVRRLLITAAAAASSTMTRVPVLAWTGPPPSHHTIRPFTSSILAPSLPT
IKAGRKRPRPIFPEALSTVDRMKKLRAQARLDKGMEDDDGGESDACADAP
ISEPSVELPISASHHATIVKWLQDLVIGFKLCPWAGPALNANAIRIVVHP
EESSLEVLFETAIKEASLLATMPDGPEEQNLTTLIGVPGSTLADFRDFLD
VAGTVDDFLDELQLRGKVQLASFHPDYRFADSRPGADVENFTNRSPMPIL
HLLREVEVSRALEGYVGDPSRIYERNKAVMREAGAEKLQKLIEACRQHES
LSASTDESSRK*
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mRNA from alignment at scaffold_44:12834..13840+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9526 ID=mRNA_9526|Name=jgi.p|Nanoce1779_2|609046|organism=Nannochloropsis oceanica|type=mRNA|length=1007bp|location=Sequence derived from alignment at scaffold_44:12834..13840+ (Nannochloropsis oceanica)
AGCCACTCAATACCTCCTCGACACAGGCGAATGATGGTGCGGCGCCTCCT
CATCACCGCGGCCGCCGCTGCATCGAGCACTATGACGCGTGTCCCCGTTC
TTGCCTGGACAGGCCCCCCACCATCCCACCACACTATCCGGCCATTCACA
AGTAGCATTCTTGCGCCATCGCTCCCCACGATCAAGGCCGGCCGGAAACG
TCCGCGGCCTATCTTTCCAGAAGCGCTTTCTACTGTGGATCGTATGAAAA
AGTTAAGGGCACAGGCGCGATTGGATAAGGGCATGGAGGACGACGACGGC
GGTGAAAGCGACGCATGTGCTGATGCGCCCATCTCGGAACCATCAGTCGA
ATTGCCTATATCCGCTTCTCATCACGCCACCATCGTCAAATGGCTGCAGG
ACCTGGTGATCGGATTCAAACTTTGTCCATGGGCTGGTCCTGCACTGAAT
GCAAATGCCATCAGAATCGTGGTCCACCCCGAAGAATCAAGTCTTGAAGT
GCTCTTCGAGACAGCAATAAAGGAAGCCTCTCTCCTTGCAACCATGCCTG
ATGGGCCAGAGGAACAGAACCTCACGACGCTCATTGGTGTGCCGGGATCA
ACGTTGGCTGACTTTCGGGACTTTCTAGACGTGGCAGGGACAGTTGACGA
CTTCTTAGACGAACTCCAACTTCGCGGGAAAGTGCAGCTTGCCTCTTTCC
ATCCCGATTACAGGTTTGCTGACTCAAGGCCGGGGGCAGACGTGGAAAAT
TTCACGAATCGAAGCCCGATGCCTATCTTGCATTTGTTGAGGGAAGTCGA
GGTGAGTCGCGCATTGGAAGGGTATGTGGGTGATCCTTCACGGATATATG
AACGCAACAAGGCTGTGATGCGGGAGGCGGGTGCTGAGAAATTGCAAAAA
TTGATTGAGGCCTGTAGGCAACACGAATCACTATCAGCATCAACAGATGA
GAGCTCAAGAAAGTGACGAAAGAAAAGGAGGATGAAAAGAAACAAGAGTC
CATGATC
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Coding sequence (CDS) from alignment at scaffold_44:12834..13840+

>mRNA_9526 ID=mRNA_9526|Name=jgi.p|Nanoce1779_2|609046|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_44:12834..13840+ (Nannochloropsis oceanica)
ATGATGGTGCGGCGCCTCCTCATCACCGCGGCCGCCGCTGCATCGAGCAC
TATGACGCGTGTCCCCGTTCTTGCCTGGACAGGCCCCCCACCATCCCACC
ACACTATCCGGCCATTCACAAGTAGCATTCTTGCGCCATCGCTCCCCACG
ATCAAGGCCGGCCGGAAACGTCCGCGGCCTATCTTTCCAGAAGCGCTTTC
TACTGTGGATCGTATGAAAAAGTTAAGGGCACAGGCGCGATTGGATAAGG
GCATGGAGGACGACGACGGCGGTGAAAGCGACGCATGTGCTGATGCGCCC
ATCTCGGAACCATCAGTCGAATTGCCTATATCCGCTTCTCATCACGCCAC
CATCGTCAAATGGCTGCAGGACCTGGTGATCGGATTCAAACTTTGTCCAT
GGGCTGGTCCTGCACTGAATGCAAATGCCATCAGAATCGTGGTCCACCCC
GAAGAATCAAGTCTTGAAGTGCTCTTCGAGACAGCAATAAAGGAAGCCTC
TCTCCTTGCAACCATGCCTGATGGGCCAGAGGAACAGAACCTCACGACGC
TCATTGGTGTGCCGGGATCAACGTTGGCTGACTTTCGGGACTTTCTAGAC
GTGGCAGGGACAGTTGACGACTTCTTAGACGAACTCCAACTTCGCGGGAA
AGTGCAGCTTGCCTCTTTCCATCCCGATTACAGGTTTGCTGACTCAAGGC
CGGGGGCAGACGTGGAAAATTTCACGAATCGAAGCCCGATGCCTATCTTG
CATTTGTTGAGGGAAGTCGAGGTGAGTCGCGCATTGGAAGGGTATGTGGG
TGATCCTTCACGGATATATGAACGCAACAAGGCTGTGATGCGGGAGGCGG
GTGCTGAGAAATTGCAAAAATTGATTGAGGCCTGTAGGCAACACGAATCA
CTATCAGCATCAACAGATGAGAGCTCAAGAAAGTGA
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Synonyms
Publications