jgi.p|Nanoce1779_2|609045, mRNA_9525 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609045
Unique NamemRNA_9525
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length462
Alignment locationscaffold_44:11607..12247 +

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Properties
Property NameValue
TranscriptId609131
TrackFilteredModels2
ProteinId609045
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:11607..12247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609045gene_9525Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609045mRNA_9525-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9525CDS_9525Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9525 ID=mRNA_9525|Name=jgi.p|Nanoce1779_2|609045|organism=Nannochloropsis oceanica|type=mRNA|length=462bp
AGGCTGTCGCATTCGGGAATGTACCATTCGCAAATCCCGGCGGGCTGCCT
TGCTCCTGCTTCGGCTGCTGTTGCTGCGCCGCAGGTGGTTGTTGTTTTTT
GCCTCCTGAACGTACCCAATACACGGTGCATATGCTCGCCCGTCAGGTTT
ATTACGCGCGGAGGCACCGGGTTGGCAGCAGGAGTGGTTTGGTTATACGC
GTGGCTAGTAGCATTCACCGTGGTAGAATTTCCTGTAGTTGTTTTGTACG
CGCGCCCGGGGTCGTCTTATTGCGTGCGAGCATGATACGTGCGGCATTCT
GGAGAAGGCGAAGCGAGCGGTGGATGGTGATATCAAATAAAGTGGTGTTG
ATGGCCGTCTACATCTCGTTTGAATTCCGGGTCACGTAACCCTCGACTGG
CAAAATGCCAGATGATTCGGTCTGCCTGCATGCACCTGGCGTTGCGGTCG
TTGTCGTGTTTC
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protein sequence of jgi.p|Nanoce1779_2|609045

>mRNA_9525-protein ID=mRNA_9525-protein|Name=jgi.p|Nanoce1779_2|609045|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
RLSHSGMYHSQIPAGCLAPASAAVAAPQVVVVFCLLNVPNTRCICSPVRF
ITRGGTGLAAGVVWLYAWLVAFTVVEFPVVVLYARPGSSYCVRA*
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mRNA from alignment at scaffold_44:11607..12247+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9525 ID=mRNA_9525|Name=jgi.p|Nanoce1779_2|609045|organism=Nannochloropsis oceanica|type=mRNA|length=641bp|location=Sequence derived from alignment at scaffold_44:11607..12247+ (Nannochloropsis oceanica)
AGGCTGTCGCATTCGGGAATGTACCATTCGCAAATCCCGGCGGGCTGCCT
TGCTCCTGCTTCGGCTGCTGTTGCTGCGCCGCAGGTGGTTGTTGTTTTTT
GCCGTGGGAGCGAGCTGCACAGTGGAAAAAAGAAAAGGAATTAACGCCAT
AAGTGAAAAAAAATGGTCAAAGATACAGGGTGACAATTGTTCCACCCCAG
CTTCATCCCTGAGGGTCAAATACAGCTCCAGCGTAAATATCAGAAGAAAC
AGGTAGCACCTACTCATGTTTGCCACCAACAGTCCTGAACGTACCCAATA
CACGGTGCATATGCTCGCCCGTCAGGTTTATTACGCGCGGAGGCACCGGG
TTGGCAGCAGGAGTGGTTTGGTTATACGCGTGGCTAGTAGCATTCACCGT
GGTAGAATTTCCTGTAGTTGTTTTGTACGCGCGCCCGGGGTCGTCTTATT
GCGTGCGAGCATGATACGTGCGGCATTCTGGAGAAGGCGAAGCGAGCGGT
GGATGGTGATATCAAATAAAGTGGTGTTGATGGCCGTCTACATCTCGTTT
GAATTCCGGGTCACGTAACCCTCGACTGGCAAAATGCCAGATGATTCGGT
CTGCCTGCATGCACCTGGCGTTGCGGTCGTTGTCGTGTTTC
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Coding sequence (CDS) from alignment at scaffold_44:11607..12247+

>mRNA_9525 ID=mRNA_9525|Name=jgi.p|Nanoce1779_2|609045|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_44:11607..12247+ (Nannochloropsis oceanica)
AGGCTGTCGCATTCGGGAATGTACCATTCGCAAATCCCGGCGGGCTGCCT
TGCTCCTGCTTCGGCTGCTGTTGCTGCGCCGCAGGTGGTTGTTGTTTTTT
GCCTCCTGAACGTACCCAATACACGGTGCATATGCTCGCCCGTCAGGTTT
ATTACGCGCGGAGGCACCGGGTTGGCAGCAGGAGTGGTTTGGTTATACGC
GTGGCTAGTAGCATTCACCGTGGTAGAATTTCCTGTAGTTGTTTTGTACG
CGCGCCCGGGGTCGTCTTATTGCGTGCGAGCATGAAGGCTGTCGCATTCG
GGAATGTACCATTCGCAAATCCCGGCGGGCTGCCTTGCTCCTGCTTCGGC
TGCTGTTGCTGCGCCGCAGGTGGTTGTTGTTTTTTGCCTCCTGAACGTAC
CCAATACACGGTGCATATGCTCGCCCGTCAGGTTTATTACGCGCGGAGGC
ACCGGGTTGGCAGCAGGAGTGGTTTGGTTATACGCGTGGCTAGTAGCATT
CACCGTGGTAGAATTTCCTGTAGTTGTTTTGTACGCGCGCCCGGGGTCGT
CTTATTGCGTGCGAGCATGA
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Synonyms
Publications