|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 660901 |
| Track | FilteredModels2 |
| ProteinId | 660815 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:7112..10145 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9524 ID=mRNA_9524|Name=jgi.p|Nanoce1779_2|660815|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp
ATGACAATCACGGACACTCCCAACGCGACGACGAAGAAAAATATCCCTGG
AAGCTCAAAGTTCTTGATTCGTGGCCTTCATGACAAAGCCAAGATGGACA
AGGAAATTGTGCTTAGGAACCTAAGGTTTCAGAATGGAAAAGCGCTAAAG
AACCTACAGGTAGAGAAGGAGAAAGCGCTGGAGAACCTGCAGCTCGAGAA
TGAGAAAGCGCAAAAAGAGGCTAAGGCGACGCTGGCTGTAAATGAAAAAG
GCTTGGCGCGGATGCAGGAGAAGCGAGATGCAATGCGGAAGGAGCGAGAT
GAAATGAGGGAGGAGCTAGATGCAATGCGGGAGGAGCTAGATGAAATGCG
GGAGGAGCGAGATGCAATGCGGGAGGAGCGGGACGCAATCGAGGAGGAGC
GGGATAGTGCTCTGCTGCGAATGGAGCCGTTGGCGAAGCATTACCGGGAA
ATGGCCGGGGTGAGCAATCTGGACGAGTTGGCCCTGTTGGCGATCGGAAA
TGGGGCGGTGGCGTCGGCGGCGGAAGGTGGCTCGGTCGAAGAGGAGGGCG
GGAAAGCACCTTCGGAGTGGCAGGTGAAGGAAAAGGAGAGAGAGGGCGTG
ACAGAGGAGCCTGAGCCGTTGAGGGCATCAAATGAAGCAACGGCAGCAGC
AGGAGCAGCAGTCGGGAGTCCTGTGGGGGCCAGTAGTCATAAAGCGAGTC
GCAAAAGTTTAGGCCAGCGGGACCAGGAGGGGGGGGAAGACGAGGAAGAC
AAGGTAAAGAGGCTGAAAGCAGAGCTGGTGGCGACGGAGGAGCTCTCCAG
CAAGCTCAGCATAGAGCTGCGTCAGATGAATGACGAGCTCGTGCAGATGA
AGGACAGATTGATTGCCATGGCGGAAGAATTTCACGACCTGGTGCCAGTA
CACGTGTTTTGCGAAGCCACAGCCGCGGACGTGAAAATTGCGTTCGAGAA
GTGGAAGGGCTACACTAAGCAGGCGGCCTTGGTCCAGAAGGTTAACGACG
AGTTGGATTCTATTTTGCGCGACCCCCGCTTCGATCCCTTCATCCGCCGG
GATGGCAAGTTGGCGGAAAGATCAAGAAGCATAAAGTCCTCCAGCGCATC
AAGAGGGAGTATGGCGAGGGCGTGTGGACGCTCCTCATGTTGAAGCGATG
GGAGATCGAGCAATACAACCCCAGCGGGCATTACCCTACCAAAGTTTTGT
GGAAAGGTGACAAAAAACTGAAGCTTAACGAGGCGATCGATCACCTGCAC
GAAAAGCTCAAGGTGCTGCTAGGAGGCAATGGTGGCGGCAGCGACTAAGC
ACCAGAAGTAGAGGAGGGGAAAGGAAGGAAAAGAGGTAAATATTGGACAT
AGTAGTGTACAAGACTACCAGCCAATTACTAAACATTGACGATTAGGAGA
AGAGACGGAGGAATTTGGGGGGGGGGGTTAGATCTAAGAGAGGGTGTGTT
CGCCATCAAACCCCCAAAAAGCAAAAAAGCAAAAAAGCTTTTTGAGGGGT
TGCGAACACAGCCTCTATTGCTCACTGCTTTTGACAAAAACGCCCGGACG
TGTAAGTAGCGACTCTTACCATCACACTACCTATCTTCCATCCCATAAAA
TGAAGTCATATCCCATGTGACACGAAGATGATATAGGCAACAAATCGAAG
AATTAATTCATATGTGTATGTGTAACCTCTAGTTGCTCTTGTTAGCCTGT
GGTTTTTTGGTGCATGGGCCAGATCTGGATCAAGCGACAGCAAGGACGTG
GTCGTGGTGGTCTTCGAAAAA back to topprotein sequence of jgi.p|Nanoce1779_2|660815 >mRNA_9524-protein ID=mRNA_9524-protein|Name=jgi.p|Nanoce1779_2|660815|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MTITDTPNATTKKNIPGSSKFLIRGLHDKAKMDKEIVLRNLRFQNGKALK
NLQVEKEKALENLQLENEKAQKEAKATLAVNEKGLARMQEKRDAMRKERD
EMREELDAMREELDEMREERDAMREERDAIEEERDSALLRMEPLAKHYRE
MAGVSNLDELALLAIGNGAVASAAEGGSVEEEGGKAPSEWQVKEKEREGV
TEEPEPLRASNEATAAAGAAVGSPVGASSHKASRKSLGQRDQEGGEDEED
KVKRLKAELVATEELSSKLSIELRQMNDELVQMKDRLIAMAEEFHDLVPV
HVFCEATAADVKIAFEKWKGYTKQAALVQKVNDELDSILRDPRFDPFIRR
DGKLAERSRSIKSSSASRGSMARACGRSSC* back to topmRNA from alignment at scaffold_44:7112..10145- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9524 ID=mRNA_9524|Name=jgi.p|Nanoce1779_2|660815|organism=Nannochloropsis oceanica|type=mRNA|length=3034bp|location=Sequence derived from alignment at scaffold_44:7112..10145- (Nannochloropsis oceanica)
ATGACAATCACGGACACTCCCAACGCGACGACGAAGAAAAATATCCCTGG
AAGCTCAAAGTTCTTGATTCGTGGCCTTCATGACAAAGCCAAGGTAAGCG
ACAATATCTCCAACTCGCCTCCACCTCCCCGTGGGAGTACCAGCACCTCC
ATGCCAGCAGGGACGAGAGAAAATTTTACCAGCCCTGGCGTAGCTCGCGC
AAACACCACCGCAGTTGGCTCGCCGATCCATCCTCGCGTGAGCCCCCGAA
CCAATACAACCAGCACCAGTAGCACCAACCAGACGATGATCGTTGCAGTG
CGTGGAAATGCGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTGAGTATCTT
TAATTGTTAGAGAACATGATCCGGAGATTGCTATCAGGCTATTATTAATG
GAATTGAGCAATGCAAAACAAGAGCGTATGCAACGGAGTTGGGGGAGAAA
TGATTTGTGGATTTTCGGGTTCATTCACATTGAATTATTAAGTTTTTTAC
GCTTGGTTGGTCACTTTAAATTTAAAAGGTTTCTGGTGCACTGCCCCTTC
GTACTTCTGACTGCAAACTGGTGGCAAGCTGACAAAAGAAGTCTCAAAAA
AAGAAAACAAAGGAAATGCCCTCCCAAACATATTTGGGAAGCTTTCAAGA
GAAATTGGGTTTCGTCGGTCCAGCTCAGCCCATTTCACGTGCAGCGCATC
AACCCCCAACCTCAACCTCCCGACCTCACATACCCAGGTTGCAGGCTCGA
CTAATGCTTTTTGGCGACACGGTCAGTCAGTGCAATTTATCAGAAAACTA
ACCTCTCTGCACTCCCCAACCCCATCCCACAAGGTAGAACCGCTGCAAGC
ATGTCTTACCATCAAGACCGGTCGGCTTGGGTGGGAGGAGGCCATAGCGG
AGGGGCAAGCGGAGGGAACAATCACAGCGGGAGGCCGTGGTCCTCCTCTT
CTTCAGCTTCTTTCTATTTTGGTCAGAAGCGGGGCCGCAGTGACGAGATG
TTGGGGCTGGCAAGAAGCAGAAGCACAGAGAGTGACCGGAGCAGCAGTGC
CAGCCATAATCAAGGCGGTCCTCGATGTGCGGAAGGAGGGGGAGGAGGTT
GGGGACGAGGGGCAAATAGAGGAGGAGCAGACCCAACTTTGACGATTGCA
CGACTGCAACAAGACCTTGAAACTAGGGGTAAGCATACGCATAGATAGGG
GTGGATGGTGTCTAGGGAATAGGGGGTCGCCAGAGGGTTGTATTCCTATG
AACCCTTTTCGCATCCCTCCCTCCTCCATCCACTGGCCAAGATGAAGCTG
GCGAAGAACAACCTGTTTGTATGCAGATGGACAAGGAAATTGTGCTTAGG
AACCTAAGGTTTCAGAATGGAAAAGCGCTAAAGAACCTACAGGTAGAGAA
GGAGAAAGCGCTGGAGAACCTGCAGCTCGAGAATGAGAAAGCGCAAAAAG
AGGCTAAGGCGACGCTGGCTGTAAATGAAAAAGGCTTGGCGCGGATGCAG
GAGAAGCGAGATGCAATGCGGAAGGAGCGAGATGAAATGAGGGAGGAGCT
AGATGCAATGCGGGAGGAGCTAGATGAAATGCGGGAGGAGCGAGATGCAA
TGCGGGAGGAGCGGGACGCAATCGAGGAGGAGCGGGATAGTGCTCTGCTG
CGAATGGAGCCGTTGGCGAAGCATTACCGGGAAATGGGTGTGTGGATCTA
GACCGTGTGTCCGCAAGCCGGGGTGAGCAATCTGGACGAGTTGGCCCTGT
TGGCGATCGGAAATGGGGCGGTGGCGTCGGCGGCGGAAGGTGGCTCGGTC
GAAGAGGAGGGCGGGAAAGCACCTTCGGAGTGGCAGGTGAAGGAAAAGGA
GAGAGAGGGCGTGACAGAGGAGCCTGAGCCGTTGAGGGCATCAAATGAAG
CAACGGCAGCAGCAGGAGCAGCAGTCGGGAGTCCTGTGGGGGCCAGTAGT
CATAAAGCGAGTCGCAAAAGTTTAGGCCAGCGGGACCAGGAGGGGGGGGA
AGACGAGGAAGACAAGGTAAAGAGGCTGAAAGCAGAGCTGGTGGCGACGG
AGGAGCTCTCCAGCAAGCTCAGCATAGAGCTGCGTCAGATGAATGACGAG
CTCGTGCAGATGAAGGACAGATTGATTGCCATGGCGGAAGAATTTCACGA
CCTGGTGCCAGTACACGTGTTTTGCGAAGCCACAGCCGCGGACGTGAAAA
TTGCGTTCGAGAAGTGGAAGGGCTACACTAAGCAGGCGGCCTTGGTCCAG
AAGGTTAACGACGAGTTGGATTCTATTTTGCGCGACCCCCGCTTCGATCC
CTTCATCCGCCGGGATGGCAAGTTGGCGGAAAGATCAAGAAGCATAAAGT
CCTCCAGCGCATCAAGAGGGAGTATGGCGAGGGCGTGTGGACGCTCCTCA
TGTTGAAGCGATGGGAGATCGAGCAATACAACCCCAGCGGGCATTACCCT
ACCAAAGTTTTGTGGAAAGGTGACAAAAAACTGAAGCTTAACGAGGCGAT
CGATCACCTGCACGAAAAGCTCAAGGTGCTGCTAGGAGGCAATGGTGGCG
GCAGCGACTAAGCACCAGAAGTAGAGGAGGGGAAAGGAAGGAAAAGAGGT
AAATATTGGACATAGTAGTGTACAAGACTACCAGCCAATTACTAAACATT
GACGATTAGGAGAAGAGACGGAGGAATTTGGGGGGGGGGGTTAGATCTAA
GAGAGGGTGTGTTCGCCATCAAACCCCCAAAAAGCAAAAAAGCAAAAAAG
CTTTTTGAGGGGTTGCGAACACAGCCTCTATTGCTCACTGCTTTTGACAA
AAACGCCCGGACGTGTAAGTAGCGACTCTTACCATCACACTACCTATCTT
CCATCCCATAAAATGAAGTCATATCCCATGTGACACGAAGATGATATAGG
CAACAAATCGAAGAATTAATTCATATGTGTATGTGTAACCTCTAGTTGCT
CTTGTTAGCCTGTGGTTTTTTGGTGCATGGGCCAGATCTGGATCAAGCGA
CAGCAAGGACGTGGTCGTGGTGGTCTTCGAAAAA back to topCoding sequence (CDS) from alignment at scaffold_44:7112..10145- >mRNA_9524 ID=mRNA_9524|Name=jgi.p|Nanoce1779_2|660815|organism=Nannochloropsis oceanica|type=CDS|length=3429bp|location=Sequence derived from alignment at scaffold_44:7112..10145- (Nannochloropsis oceanica)
CCGGGGTGAGCAATCTGGACGAGTTGGCCCTGTTGGCGATCGGAAATGGG
GCGGTGGCGTCGGCGGCGGAAGGTGGCTCGGTCGAAGAGGAGGGCGGGAA
AGCACCTTCGGAGTGGCAGGTGAAGGAAAAGGAGAGAGAGGGCGTGACAG
AGGAGCCTGAGCCGTTGAGGGCATCAAATGAAGCAACGGCAGCAGCAGGA
GCAGCAGTCGGGAGTCCTGTGGGGGCCAGTAGTCATAAAGCGAGTCGCAA
AAGTTTAGGCCAGCGGGACCAGGAGGGGGGGGAAGACGAGGAAGACAAGG
TAAAGAGGCTGAAAGCAGAGCTGGTGGCGACGGAGGAGCTCTCCAGCAAG
CTCAGCATAGAGCTGCGTCAGATGAATGACGAGCTCGTGCAGATGAAGGA
CAGATTGATTGCCATGGCGGAAGAATTTCACGACCTGGTGCCAGTACACG
TGTTTTGCGAAGCCACAGCCGCGGACGTGAAAATTGCGTTCGAGAAGTGG
AAGGGCTACACTAAGCAGGCGGCCTTGGTCCAGAAGGTTAACGACGAGTT
GGATTCTATTTTGCGCGACCCCCGCTTCGATCCCTTCATCCGCCGGGATG
GCAAGTTGGCGGAAAGATCAAGAAGCATAAAGTCCTCCAGCGCATCAAGA
GGGAGTATGGCGAGGGCGTGTGGACGCTCCTCATGTTGAATGGACAAGGA
AATTGTGCTTAGGAACCTAAGGTTTCAGAATGGAAAAGCGCTAAAGAACC
TACAGGTAGAGAAGGAGAAAGCGCTGGAGAACCTGCAGCTCGAGAATGAG
AAAGCGCAAAAAGAGGCTAAGGCGACGCTGGCTGTAAATGAAAAAGGCTT
GGCGCGGATGCAGGAGAAGCGAGATGCAATGCGGAAGGAGCGAGATGAAA
TGAGGGAGGAGCTAGATGCAATGCGGGAGGAGCTAGATGAAATGCGGGAG
GAGCGAGATGCAATGCGGGAGGAGCGGGACGCAATCGAGGAGGAGCGGGA
TAGTGCTCTGCTGCGAATGGAGCCGTTGGCGAAGCATTACCGGGAAATGG
ATGACAATCACGGACACTCCCAACGCGACGACGAAGAAAAATATCCCTGG
AAGCTCAAAGTTCTTGATTCGTGGCCTTCATGACAAAGCCAAGCCGGGGT
GAGCAATCTGGACGAGTTGGCCCTGTTGGCGATCGGAAATGGGGCGGTGG
CGTCGGCGGCGGAAGGTGGCTCGGTCGAAGAGGAGGGCGGGAAAGCACCT
TCGGAGTGGCAGGTGAAGGAAAAGGAGAGAGAGGGCGTGACAGAGGAGCC
TGAGCCGTTGAGGGCATCAAATGAAGCAACGGCAGCAGCAGGAGCAGCAG
TCGGGAGTCCTGTGGGGGCCAGTAGTCATAAAGCGAGTCGCAAAAGTTTA
GGCCAGCGGGACCAGGAGGGGGGGGAAGACGAGGAAGACAAGGTAAAGAG
GCTGAAAGCAGAGCTGGTGGCGACGGAGGAGCTCTCCAGCAAGCTCAGCA
TAGAGCTGCGTCAGATGAATGACGAGCTCGTGCAGATGAAGGACAGATTG
ATTGCCATGGCGGAAGAATTTCACGACCTGGTGCCAGTACACGTGTTTTG
CGAAGCCACAGCCGCGGACGTGAAAATTGCGTTCGAGAAGTGGAAGGGCT
ACACTAAGCAGGCGGCCTTGGTCCAGAAGGTTAACGACGAGTTGGATTCT
ATTTTGCGCGACCCCCGCTTCGATCCCTTCATCCGCCGGGATGGCAAGTT
GGCGGAAAGATCAAGAAGCATAAAGTCCTCCAGCGCATCAAGAGGGAGTA
TGGCGAGGGCGTGTGGACGCTCCTCATGTTGAATGGACAAGGAAATTGTG
CTTAGGAACCTAAGGTTTCAGAATGGAAAAGCGCTAAAGAACCTACAGGT
AGAGAAGGAGAAAGCGCTGGAGAACCTGCAGCTCGAGAATGAGAAAGCGC
AAAAAGAGGCTAAGGCGACGCTGGCTGTAAATGAAAAAGGCTTGGCGCGG
ATGCAGGAGAAGCGAGATGCAATGCGGAAGGAGCGAGATGAAATGAGGGA
GGAGCTAGATGCAATGCGGGAGGAGCTAGATGAAATGCGGGAGGAGCGAG
ATGCAATGCGGGAGGAGCGGGACGCAATCGAGGAGGAGCGGGATAGTGCT
CTGCTGCGAATGGAGCCGTTGGCGAAGCATTACCGGGAAATGGATGACAA
TCACGGACACTCCCAACGCGACGACGAAGAAAAATATCCCTGGAAGCTCA
AAGTTCTTGATTCGTGGCCTTCATGACAAAGCCAAGCCGGGGTGAGCAAT
CTGGACGAGTTGGCCCTGTTGGCGATCGGAAATGGGGCGGTGGCGTCGGC
GGCGGAAGGTGGCTCGGTCGAAGAGGAGGGCGGGAAAGCACCTTCGGAGT
GGCAGGTGAAGGAAAAGGAGAGAGAGGGCGTGACAGAGGAGCCTGAGCCG
TTGAGGGCATCAAATGAAGCAACGGCAGCAGCAGGAGCAGCAGTCGGGAG
TCCTGTGGGGGCCAGTAGTCATAAAGCGAGTCGCAAAAGTTTAGGCCAGC
GGGACCAGGAGGGGGGGGAAGACGAGGAAGACAAGGTAAAGAGGCTGAAA
GCAGAGCTGGTGGCGACGGAGGAGCTCTCCAGCAAGCTCAGCATAGAGCT
GCGTCAGATGAATGACGAGCTCGTGCAGATGAAGGACAGATTGATTGCCA
TGGCGGAAGAATTTCACGACCTGGTGCCAGTACACGTGTTTTGCGAAGCC
ACAGCCGCGGACGTGAAAATTGCGTTCGAGAAGTGGAAGGGCTACACTAA
GCAGGCGGCCTTGGTCCAGAAGGTTAACGACGAGTTGGATTCTATTTTGC
GCGACCCCCGCTTCGATCCCTTCATCCGCCGGGATGGCAAGTTGGCGGAA
AGATCAAGAAGCATAAAGTCCTCCAGCGCATCAAGAGGGAGTATGGCGAG
GGCGTGTGGACGCTCCTCATGTTGAATGGACAAGGAAATTGTGCTTAGGA
ACCTAAGGTTTCAGAATGGAAAAGCGCTAAAGAACCTACAGGTAGAGAAG
GAGAAAGCGCTGGAGAACCTGCAGCTCGAGAATGAGAAAGCGCAAAAAGA
GGCTAAGGCGACGCTGGCTGTAAATGAAAAAGGCTTGGCGCGGATGCAGG
AGAAGCGAGATGCAATGCGGAAGGAGCGAGATGAAATGAGGGAGGAGCTA
GATGCAATGCGGGAGGAGCTAGATGAAATGCGGGAGGAGCGAGATGCAAT
GCGGGAGGAGCGGGACGCAATCGAGGAGGAGCGGGATAGTGCTCTGCTGC
GAATGGAGCCGTTGGCGAAGCATTACCGGGAAATGGATGACAATCACGGA
CACTCCCAACGCGACGACGAAGAAAAATATCCCTGGAAGCTCAAAGTTCT
TGATTCGTGGCCTTCATGACAAAGCCAAG back to top
|