jgi.p|Nanoce1779_2|574785, mRNA_952 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574785
Unique Name	mRNA_952
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1758
Alignment location	scaffold_2:836101..837858 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574871
Track	FilteredModels2
ProteinId	574785

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:836101..837858 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574785	gene_952	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574785	mRNA_952-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_952	CDS_952	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:836101..837858+
coding sequence from alignment at scaffold_2:836101..837858+

mRNA sequence

>mRNA_952 ID=mRNA_952|Name=jgi.p|Nanoce1779_2|574785|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp
TGCCAGCTGCACTAGATTTGGCTTTGGCCAATGGCAGCACAAGTAGCGCT
TTTGTTACGCATATTAGATACAGACCGGGCTGGAAGGAGATTTCGTGGCC
TGCCGTGTACACAACTTTTAGTTTCTACGCTCTTGATGGTATAACAGGCC
TGGCTAGTGATACAGCTACGGTTTTCATCCAGGTCAAGGCTGTGCACGAG
ATTCCGAGGGCGGGCATCTTGGATGATAAGGGCAACGTCACATTTTTATC
GGTTAAGACTATGGCAGGGCGGCTCACAGCTGTGACACTCATGGGCACAG
CATCTGAGGGCTTTCGCATTATGACAGCTCAAATCGCTTCTCTCCCTACG
CACGGCCATCTATACCGCCTCGACGACACCAACGCTACCACACCACTGCT
GGTGGGGGATGAGCTTGCGATCACTCCTCTCGCACCGGCACAGTTGGCTT
ATCTCTACACGGGGCCGCAAGTACAATTGCTGCAAGGACAGGATAATGAT
TACAAAAAGGCACATGCCGCCCGCATCAATGACAACTTGGCCACTGACGC
CTTCACATATATTGTCATTGATAGCTTCAATGCCTCTTCCGTACCAGGCA
CTCTTCATCTTGTTGTTGTGCCCTCCTTGGTGGCTCTGCCCACGATCAAT
ACGCCCATCGTACCCGAGAACACCCTGACGCCCGTGTATCTGTATGGCAT
GGATCACCAAAGCCTGGAGCACCGGAAATTGTGCTTCGAAATTACGGGCC
TGCCACATCATGGCACCTTGCACATACTACGGGCGAATGGCACTTCGGAT
GCTGTGACCTCGGTGCCTTTTCGGTTGCCGGACCAGGTATCATCATTTCC
CTACGAGACAGGCGTGACTGTGCATTATGTTTCGGATGCTGGGTTCTTTA
CACAGCCCAATCGGACCTGGAACGGCACGGCTCTATTCCCGGAAGGTGAG
GTGGAAGAAGGGTTTTATTTTCGGGTTGTAGCATGTGACGACGACAACGA
CGCTGCCTCGGCATCAATATCTATTCAGCAGCGGATTATAGTGCAGAATG
TAAATGATGCCATAATACTTCTCGCACCATCTGCGTCTCTGCTGTCGGTT
TTAGGCCTCGGTGCGCTTGGTGTGGCGACCAATGTGAGCGGCGGCGAGGT
CTTCCAGGGCTACGATGTACTGACTCTGAAAGGTTGGCAGGTGGTGGATC
CCGATCTTGACGTAGATCCTGTGCTAGTCCGCATTAGCGCAGTGTATGGC
ATTGTGCGCCTGAACCCACAATACCTATCCTTTGCAGACTTTGCCTCGGT
GCGGTGCCAGATGTTTGAGGAGGGTGCTGAGGCCACGCCGTCATCGCTCT
GTCAGGGAAGTGGAGAGGACCGAACAATGGTGTTTGTGGCTTCCCCAGCA
CACTTAAAACTCTTATTGGAAGGGATGGAGTATCGCTCAGCAACCCCCAA
CGTAGTCGATACCGTGCGAGTGGCAGTCTTCGACGGGGAAACAGTGGACG
CGGGTCAAGATGGATGTTTGCCAGCACGTGCCTTTAACTCCACGTCCCTG
AGGTTCAGCGGCTGCTGGATAGCGACAGCTAATATTACTGTGCATGTGGG
ACCATCGGCTTTGCTACTTTCACTTTATCTATCCGATGTCAATCACAAAG
TGCCTAGTTCCCTCTGGTTTGCACTCTGGGCTTGGCTGCTCTTCATGACC
TCGGCTGGGGTGACAGCGTGGTGGCACAGTCGTCAACAGAGTTAGGACAG
ATTGCCGT

protein sequence of jgi.p|Nanoce1779_2|574785

>mRNA_952-protein ID=mRNA_952-protein|Name=jgi.p|Nanoce1779_2|574785|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MAGRLTAVTLMGTASEGFRIMTAQIASLPTHGHLYRLDDTNATTPLLVGD
ELAITPLAPAQLAYLYTGPQVQLLQGQDNDYKKAHAARINDNLATDAFTY
IVIDSFNASSVPGTLHLVVVPSLVALPTINTPIVPENTLTPVYLYGMDHQ
SLEHRKLCFEITGLPHHGTLHILRANGTSDAVTSVPFRLPDQVSSFPYET
GVTVHYVSDAGFFTQPNRTWNGTALFPEGEVEEGFYFRVVACDDDNDAAS
ASISIQQRIIVQNVNDAIILLAPSASLLSVLGLGALGVATNVSGGEVFQG
YDVLTLKGWQVVDPDLDVDPVLVRISAVYGIVRLNPQYLSFADFASVRCQ
MFEEGAEATPSSLCQGSGEDRTMVFVASPAHLKLLLEGMEYRSATPNVVD
TVRVAVFDGETVDAGQDGCLPARAFNSTSLRFSGCWIATANITVHVGPSA
LLLSLYLSDVNHKVPSSLWFALWAWLLFMTSAGVTAWWHSRQQS*

mRNA from alignment at scaffold_2:836101..837858+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_952 ID=mRNA_952|Name=jgi.p|Nanoce1779_2|574785|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp|location=Sequence derived from alignment at scaffold_2:836101..837858+ (Nannochloropsis oceanica)
TGCCAGCTGCACTAGATTTGGCTTTGGCCAATGGCAGCACAAGTAGCGCT
TTTGTTACGCATATTAGATACAGACCGGGCTGGAAGGAGATTTCGTGGCC
TGCCGTGTACACAACTTTTAGTTTCTACGCTCTTGATGGTATAACAGGCC
TGGCTAGTGATACAGCTACGGTTTTCATCCAGGTCAAGGCTGTGCACGAG
ATTCCGAGGGCGGGCATCTTGGATGATAAGGGCAACGTCACATTTTTATC
GGTTAAGACTATGGCAGGGCGGCTCACAGCTGTGACACTCATGGGCACAG
CATCTGAGGGCTTTCGCATTATGACAGCTCAAATCGCTTCTCTCCCTACG
CACGGCCATCTATACCGCCTCGACGACACCAACGCTACCACACCACTGCT
GGTGGGGGATGAGCTTGCGATCACTCCTCTCGCACCGGCACAGTTGGCTT
ATCTCTACACGGGGCCGCAAGTACAATTGCTGCAAGGACAGGATAATGAT
TACAAAAAGGCACATGCCGCCCGCATCAATGACAACTTGGCCACTGACGC
CTTCACATATATTGTCATTGATAGCTTCAATGCCTCTTCCGTACCAGGCA
CTCTTCATCTTGTTGTTGTGCCCTCCTTGGTGGCTCTGCCCACGATCAAT
ACGCCCATCGTACCCGAGAACACCCTGACGCCCGTGTATCTGTATGGCAT
GGATCACCAAAGCCTGGAGCACCGGAAATTGTGCTTCGAAATTACGGGCC
TGCCACATCATGGCACCTTGCACATACTACGGGCGAATGGCACTTCGGAT
GCTGTGACCTCGGTGCCTTTTCGGTTGCCGGACCAGGTATCATCATTTCC
CTACGAGACAGGCGTGACTGTGCATTATGTTTCGGATGCTGGGTTCTTTA
CACAGCCCAATCGGACCTGGAACGGCACGGCTCTATTCCCGGAAGGTGAG
GTGGAAGAAGGGTTTTATTTTCGGGTTGTAGCATGTGACGACGACAACGA
CGCTGCCTCGGCATCAATATCTATTCAGCAGCGGATTATAGTGCAGAATG
TAAATGATGCCATAATACTTCTCGCACCATCTGCGTCTCTGCTGTCGGTT
TTAGGCCTCGGTGCGCTTGGTGTGGCGACCAATGTGAGCGGCGGCGAGGT
CTTCCAGGGCTACGATGTACTGACTCTGAAAGGTTGGCAGGTGGTGGATC
CCGATCTTGACGTAGATCCTGTGCTAGTCCGCATTAGCGCAGTGTATGGC
ATTGTGCGCCTGAACCCACAATACCTATCCTTTGCAGACTTTGCCTCGGT
GCGGTGCCAGATGTTTGAGGAGGGTGCTGAGGCCACGCCGTCATCGCTCT
GTCAGGGAAGTGGAGAGGACCGAACAATGGTGTTTGTGGCTTCCCCAGCA
CACTTAAAACTCTTATTGGAAGGGATGGAGTATCGCTCAGCAACCCCCAA
CGTAGTCGATACCGTGCGAGTGGCAGTCTTCGACGGGGAAACAGTGGACG
CGGGTCAAGATGGATGTTTGCCAGCACGTGCCTTTAACTCCACGTCCCTG
AGGTTCAGCGGCTGCTGGATAGCGACAGCTAATATTACTGTGCATGTGGG
ACCATCGGCTTTGCTACTTTCACTTTATCTATCCGATGTCAATCACAAAG
TGCCTAGTTCCCTCTGGTTTGCACTCTGGGCTTGGCTGCTCTTCATGACC
TCGGCTGGGGTGACAGCGTGGTGGCACAGTCGTCAACAGAGTTAGGACAG
ATTGCCGT

Coding sequence (CDS) from alignment at scaffold_2:836101..837858+

>mRNA_952 ID=mRNA_952|Name=jgi.p|Nanoce1779_2|574785|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at scaffold_2:836101..837858+ (Nannochloropsis oceanica)
ATGGCAGGGCGGCTCACAGCTGTGACACTCATGGGCACAGCATCTGAGGG
CTTTCGCATTATGACAGCTCAAATCGCTTCTCTCCCTACGCACGGCCATC
TATACCGCCTCGACGACACCAACGCTACCACACCACTGCTGGTGGGGGAT
GAGCTTGCGATCACTCCTCTCGCACCGGCACAGTTGGCTTATCTCTACAC
GGGGCCGCAAGTACAATTGCTGCAAGGACAGGATAATGATTACAAAAAGG
CACATGCCGCCCGCATCAATGACAACTTGGCCACTGACGCCTTCACATAT
ATTGTCATTGATAGCTTCAATGCCTCTTCCGTACCAGGCACTCTTCATCT
TGTTGTTGTGCCCTCCTTGGTGGCTCTGCCCACGATCAATACGCCCATCG
TACCCGAGAACACCCTGACGCCCGTGTATCTGTATGGCATGGATCACCAA
AGCCTGGAGCACCGGAAATTGTGCTTCGAAATTACGGGCCTGCCACATCA
TGGCACCTTGCACATACTACGGGCGAATGGCACTTCGGATGCTGTGACCT
CGGTGCCTTTTCGGTTGCCGGACCAGGTATCATCATTTCCCTACGAGACA
GGCGTGACTGTGCATTATGTTTCGGATGCTGGGTTCTTTACACAGCCCAA
TCGGACCTGGAACGGCACGGCTCTATTCCCGGAAGGTGAGGTGGAAGAAG
GGTTTTATTTTCGGGTTGTAGCATGTGACGACGACAACGACGCTGCCTCG
GCATCAATATCTATTCAGCAGCGGATTATAGTGCAGAATGTAAATGATGC
CATAATACTTCTCGCACCATCTGCGTCTCTGCTGTCGGTTTTAGGCCTCG
GTGCGCTTGGTGTGGCGACCAATGTGAGCGGCGGCGAGGTCTTCCAGGGC
TACGATGTACTGACTCTGAAAGGTTGGCAGGTGGTGGATCCCGATCTTGA
CGTAGATCCTGTGCTAGTCCGCATTAGCGCAGTGTATGGCATTGTGCGCC
TGAACCCACAATACCTATCCTTTGCAGACTTTGCCTCGGTGCGGTGCCAG
ATGTTTGAGGAGGGTGCTGAGGCCACGCCGTCATCGCTCTGTCAGGGAAG
TGGAGAGGACCGAACAATGGTGTTTGTGGCTTCCCCAGCACACTTAAAAC
TCTTATTGGAAGGGATGGAGTATCGCTCAGCAACCCCCAACGTAGTCGAT
ACCGTGCGAGTGGCAGTCTTCGACGGGGAAACAGTGGACGCGGGTCAAGA
TGGATGTTTGCCAGCACGTGCCTTTAACTCCACGTCCCTGAGGTTCAGCG
GCTGCTGGATAGCGACAGCTAATATTACTGTGCATGTGGGACCATCGGCT
TTGCTACTTTCACTTTATCTATCCGATGTCAATCACAAAGTGCCTAGTTC
CCTCTGGTTTGCACTCTGGGCTTGGCTGCTCTTCATGACCTCGGCTGGGG
TGACAGCGTGGTGGCACAGTCGTCAACAGAGTTAG

Synonyms

Publications