jgi.p|Nanoce1779_2|606268, mRNA_9517 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606268
Unique NamemRNA_9517
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length835
Alignment locationscaffold_34:226987..227838 +

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Properties
Property NameValue
TranscriptId606354
TrackFilteredModels2
ProteinId606268
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:226987..227838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606268gene_9517Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606268mRNA_9517-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9517CDS_9517Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9517 ID=mRNA_9517|Name=jgi.p|Nanoce1779_2|606268|organism=Nannochloropsis oceanica|type=mRNA|length=835bp
ACAGCATGCCCTCACCCCTCTCAACCGCGACCGCCACCACCCTCCTCCTC
CTCGCTGTCGCCGTCACTGCCACCGGCTGGTTCGCCTTTACGCCTTCAGG
TCAAGTCACCATCAAGTACATATGGGAGGGAGACAAAGAGGGGGCCAGAA
AAAAGGTCGCAATGAAACAGCTTAATTACCTGAAAAAAGAGCTGAGTTAC
CTGGGAGCAAGGATTGAGCGGGCAGCTAGACAGGTGGAAGAGGCGTTTAG
GGAGGTGGGGGTTAGCAAGAAAAGCAGGAGGGATAGAGATGGGGGAGACG
GGGGAGAGGATGGGGAGGAGGAGGGTTGGGAGGAGAGCGCAGCATCTACA
AGTGCCTACTATCATTTTAGTTCGTCTGGGAAGAAATTCAAGAATAAATG
GATGAGTACGACGAGATTGGAGAGAGAAGACGAGAAAGAGGCCGAGGAAG
GCGGGGCACAAACGACGATAATTGGCAATGGGAACGAGAATGGAGAAGTC
GGACACAGAGGAGGAGGGAGCAGAAGATGGAGAGAAAATGGAAATGGGAG
GGAGGGAGGAAGAGAGGAAGGAAAGCCGACGTGGGGAAGGATGCGGACGG
AGGTGGGGCAGTTGCAGAGTGATTTGGAGAAGGCGATGGGCCATTTGGAC
AGTGTGAGGGGGGACGAGGAGGTGAAACAGAGGAGAAAAGGTTTGGTGCT
GGAGAGCCACGCTTTGTTCCAGGCCTTGGATGCGGTGACCCAGCGATTGA
TCTGAAGTAGAAAGGGAGGATGAGAGGGAAGAAGGGAATGCAGGCATAGG
ATGGTGGGAAAAGAATAAGAGTCAAAGATACTGTA
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protein sequence of jgi.p|Nanoce1779_2|606268

>mRNA_9517-protein ID=mRNA_9517-protein|Name=jgi.p|Nanoce1779_2|606268|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MPSPLSTATATTLLLLAVAVTATGWFAFTPSGQVTIKYIWEGDKEGARKK
VAMKQLNYLKKELSYLGARIERAARQVEEAFREVGVSKKSRRDRDGGDGG
EDGEEEGWEESAASTSAYYHFSSSGKKFKNKWMSTTRLEREDEKEAEEGG
AQTTIIGNGNENGEVGHRGGGSRRWRENGNGREGGREEGKPTWGRMRTEV
GQLQSDLEKAMGHLDSVRGDEEVKQRRKGLVLESHALFQALDAVTQRLI*
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mRNA from alignment at scaffold_34:226987..227838+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9517 ID=mRNA_9517|Name=jgi.p|Nanoce1779_2|606268|organism=Nannochloropsis oceanica|type=mRNA|length=852bp|location=Sequence derived from alignment at scaffold_34:226987..227838+ (Nannochloropsis oceanica)
ACAGCATGCCCTCACCCCTCTCAACCGCGACCGCCACCACCCTCCTCCTC
CTCGCTGTCGCCGTCACTGCCACCGGCTGGTTCGCCTTTACGCCTTCAGG
TCAAGTCACCATCAAGTACATATGGGAGGGAGACAAAGAGGGGGCCAGAA
AAAAGGTCGCAATGAAACAGCTTAATTACCTGAAAAAAGAGCTGAGTTAC
CTGGGAGCAAGGATTGAGCGGGCAGCTAGACAGGTGGAAGAGGCGTTTAG
GGAGGTGGGGGTTAGCAAGAAAAGCAGGAGGGATAGAGATGGGGGAGACG
GGGGAGAGGATGGGGAGGAGGAGGGTTGGGAGGAGAGCGCAGCATCTACA
AGTGCCTACTATCATTTTAGTTCGTCTGGGAAGAAATTCAAGAATAAATG
GATGAGTACGACGTGGAGGAGGAGTTGAGGAGATTGGAGAGAGAAGACGA
GAAAGAGGCCGAGGAAGGCGGGGCACAAACGACGATAATTGGCAATGGGA
ACGAGAATGGAGAAGTCGGACACAGAGGAGGAGGGAGCAGAAGATGGAGA
GAAAATGGAAATGGGAGGGAGGGAGGAAGAGAGGAAGGAAAGCCGACGTG
GGGAAGGATGCGGACGGAGGTGGGGCAGTTGCAGAGTGATTTGGAGAAGG
CGATGGGCCATTTGGACAGTGTGAGGGGGGACGAGGAGGTGAAACAGAGG
AGAAAAGGTTTGGTGCTGGAGAGCCACGCTTTGTTCCAGGCCTTGGATGC
GGTGACCCAGCGATTGATCTGAAGTAGAAAGGGAGGATGAGAGGGAAGAA
GGGAATGCAGGCATAGGATGGTGGGAAAAGAATAAGAGTCAAAGATACTG
TA
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Coding sequence (CDS) from alignment at scaffold_34:226987..227838+

>mRNA_9517 ID=mRNA_9517|Name=jgi.p|Nanoce1779_2|606268|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at scaffold_34:226987..227838+ (Nannochloropsis oceanica)
ATGCCCTCACCCCTCTCAACCGCGACCGCCACCACCCTCCTCCTCCTCGC
TGTCGCCGTCACTGCCACCGGCTGGTTCGCCTTTACGCCTTCAGGTCAAG
TCACCATCAAGTACATATGGGAGGGAGACAAAGAGGGGGCCAGAAAAAAG
GTCGCAATGAAACAGCTTAATTACCTGAAAAAAGAGCTGAGTTACCTGGG
AGCAAGGATTGAGCGGGCAGCTAGACAGGTGGAAGAGGCGTTTAGGGAGG
TGGGGGTTAGCAAGAAAAGCAGGAGGGATAGAGATGGGGGAGACGGGGGA
GAGGATGGGGAGGAGGAGGGTTGGGAGGAGAGCGCAGCATCTACAAGTGC
CTACTATCATTTTAGTTCGTCTGGGAAGAAATTCAAGAATAAATGGATGA
GTACGACGAGATTGGAGAGAGAAGACGAGAAAGAGGCCGAGGAAGGCGGG
GCACAAACGACGATAATTGGCAATGGGAACGAGAATGGAGAAGTCGGACA
CAGAGGAGGAGGGAGCAGAAGATGGAGAGAAAATGGAAATGGGAGGGAGG
GAGGAAGAGAGGAAGGAAAGCCGACGTGGGGAAGGATGCGGACGGAGGTG
GGGCAGTTGCAGAGTGATTTGGAGAAGGCGATGGGCCATTTGGACAGTGT
GAGGGGGGACGAGGAGGTGAAACAGAGGAGAAAAGGTTTGGTGCTGGAGA
GCCACGCTTTGTTCCAGGCCTTGGATGCGGTGACCCAGCGATTGATCTGA
ATGCCCTCACCCCTCTCAACCGCGACCGCCACCACCCTCCTCCTCCTCGC
TGTCGCCGTCACTGCCACCGGCTGGTTCGCCTTTACGCCTTCAGGTCAAG
TCACCATCAAGTACATATGGGAGGGAGACAAAGAGGGGGCCAGAAAAAAG
GTCGCAATGAAACAGCTTAATTACCTGAAAAAAGAGCTGAGTTACCTGGG
AGCAAGGATTGAGCGGGCAGCTAGACAGGTGGAAGAGGCGTTTAGGGAGG
TGGGGGTTAGCAAGAAAAGCAGGAGGGATAGAGATGGGGGAGACGGGGGA
GAGGATGGGGAGGAGGAGGGTTGGGAGGAGAGCGCAGCATCTACAAGTGC
CTACTATCATTTTAGTTCGTCTGGGAAGAAATTCAAGAATAAATGGATGA
GTACGACGAGATTGGAGAGAGAAGACGAGAAAGAGGCCGAGGAAGGCGGG
GCACAAACGACGATAATTGGCAATGGGAACGAGAATGGAGAAGTCGGACA
CAGAGGAGGAGGGAGCAGAAGATGGAGAGAAAATGGAAATGGGAGGGAGG
GAGGAAGAGAGGAAGGAAAGCCGACGTGGGGAAGGATGCGGACGGAGGTG
GGGCAGTTGCAGAGTGATTTGGAGAAGGCGATGGGCCATTTGGACAGTGT
GAGGGGGGACGAGGAGGTGAAACAGAGGAGAAAAGGTTTGGTGCTGGAGA
GCCACGCTTTGTTCCAGGCCTTGGATGCGGTGACCCAGCGATTGATCTGA
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Synonyms
Publications