jgi.p|Nanoce1779_2|606261, mRNA_9516 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606261
Unique NamemRNA_9516
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length553
Alignment locationscaffold_34:224923..225794 -

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Properties
Property NameValue
TranscriptId606347
TrackFilteredModels2
ProteinId606261
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:224923..225794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606261gene_9516Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606261mRNA_9516-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9516CDS_9516Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9516 ID=mRNA_9516|Name=jgi.p|Nanoce1779_2|606261|organism=Nannochloropsis oceanica|type=mRNA|length=553bp
AGGTAGCGGCTTTCTCTGCCGGATTTCTCACCTTGCACGCGTGGCATTGC
CTTTGAGAGCTGCGGTTGCCTTAGCCCTAACTCCCGCCCTTGACAAGTAT
GTTGTCCGACCACTGGTGCTTTCGATGGTCTATACTGCCGACTCAGTCTC
ACATTATCCCTTCTCCTGAGGCTCAGGTTCGAAAGGGCTGGAAAACCGGT
GGCCTTGCCTCCGTCTCGATTATCGTAGGTGGTCCCGCCGCCCTTGGTCT
CGTCGCTTTTGATTTCGTCTGGTTCTCGGGAGCTCCAGCCAGGAAACCAG
TCGTGTGGAAGTGTATGTGTGGAGGCCTATGTGCTTTGTTTTGGCGGAGT
TTAGTCACCAAATCTCGATCAGGAGACACACGAAAAAAATCAAGTACATT
CCAAAATGGCTAGATTGACCACCGAAAGTGTCTACCATTGTTTGATTGTT
TGATTGACTGATTGATTGAATCATTTCGAGATCGATGGTAAAGGAAAATT
CGAGCACAACCTCCTCTAATATCATGTCTCATGCACTACCAAGTAGTGCC
CGC
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protein sequence of jgi.p|Nanoce1779_2|606261

>mRNA_9516-protein ID=mRNA_9516-protein|Name=jgi.p|Nanoce1779_2|606261|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MLSDHWCFRWSILPTQSHIIPSPEAQVRKGWKTGGLASVSIIVGGPAALG
LVAFDFVWFSGAPARKPVVWKCMCGGLCALFWRSLVTKSRSGDTRKKSST
FQNG*
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mRNA from alignment at scaffold_34:224923..225794-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9516 ID=mRNA_9516|Name=jgi.p|Nanoce1779_2|606261|organism=Nannochloropsis oceanica|type=mRNA|length=872bp|location=Sequence derived from alignment at scaffold_34:224923..225794- (Nannochloropsis oceanica)
AGGTAGCGGCTTTCTCTGCCGGATTTCTCACCTTGCACGCGTGGCATTGC
CTTTGAGAGCTGCGGTTGCCTTAGCCCTAACTCCCGCCCTTGACAAGTAT
GTTGTCCGACCACTGGTGGTGCGAGGATTGCTGAATGGGACGGAAGAGGA
GTAGTAGAAGGAAAGGAGGCCGGCGAGAGAAAATGAGGAGGGGAGAAGGG
AGTTGCTCCGATTCAGAGACCGGGTCGGATATATATATCCGACCCAGATA
TATAGGTTGGCGAGAAAAAAAGGGAAAATTAAGAACTAAAAGGGTAGAAC
TATGTCACACACCAACCTCTCTTCAATTCATTTTTTTAGCTTTCGATGGT
CTATACTGCCGACTCAGTCTCACATTATCCCTTCTCCTGAGGCTCAGGTT
CGAAAGGGCTGGAAAACCGGTGGCCTTGCCTCCGTCTCGATTATCGTAGG
TGGTCCCGCCGCCCTTGGTCTCGTCGCTTTTGATTTCGTCTGGTTCTCGG
GAGCTCCAGCCAGGAAACCAGTCGTGTGGAAGTGTATGTGTGGAGGCCTA
TGTGCTTTGTTTTGGCGGGTGTGTGGGACAAGGGTTGTGAGGGCGCGTGG
CATTTTTACGTGCCCTTCCTAACCTTTCTCAGGTTCTCCAGCATGCCTCT
TTCTGACTTACCGCAGAGTTTAGTCACCAAATCTCGATCAGGAGACACAC
GAAAAAAATCAAGTACATTCCAAAATGGCTAGATTGACCACCGAAAGTGT
CTACCATTGTTTGATTGTTTGATTGACTGATTGATTGAATCATTTCGAGA
TCGATGGTAAAGGAAAATTCGAGCACAACCTCCTCTAATATCATGTCTCA
TGCACTACCAAGTAGTGCCCGC
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Coding sequence (CDS) from alignment at scaffold_34:224923..225794-

>mRNA_9516 ID=mRNA_9516|Name=jgi.p|Nanoce1779_2|606261|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_34:224923..225794- (Nannochloropsis oceanica)
AGTTTAGTCACCAAATCTCGATCAGGAGACACACGAAAAAAATCAAGTAC
ATTCCAAAATGGCTAGCTTTCGATGGTCTATACTGCCGACTCAGTCTCAC
ATTATCCCTTCTCCTGAGGCTCAGGTTCGAAAGGGCTGGAAAACCGGTGG
CCTTGCCTCCGTCTCGATTATCGTAGGTGGTCCCGCCGCCCTTGGTCTCG
TCGCTTTTGATTTCGTCTGGTTCTCGGGAGCTCCAGCCAGGAAACCAGTC
GTGTGGAAGTGTATGTGTGGAGGCCTATGTGCTTTGTTTTGGCGGATGTT
GTCCGACCACTGGTGAGTTTAGTCACCAAATCTCGATCAGGAGACACACG
AAAAAAATCAAGTACATTCCAAAATGGCTAGCTTTCGATGGTCTATACTG
CCGACTCAGTCTCACATTATCCCTTCTCCTGAGGCTCAGGTTCGAAAGGG
CTGGAAAACCGGTGGCCTTGCCTCCGTCTCGATTATCGTAGGTGGTCCCG
CCGCCCTTGGTCTCGTCGCTTTTGATTTCGTCTGGTTCTCGGGAGCTCCA
GCCAGGAAACCAGTCGTGTGGAAGTGTATGTGTGGAGGCCTATGTGCTTT
GTTTTGGCGGATGTTGTCCGACCACTGGTGAGTTTAGTCACCAAATCTCG
ATCAGGAGACACACGAAAAAAATCAAGTACATTCCAAAATGGCTAGCTTT
CGATGGTCTATACTGCCGACTCAGTCTCACATTATCCCTTCTCCTGAGGC
TCAGGTTCGAAAGGGCTGGAAAACCGGTGGCCTTGCCTCCGTCTCGATTA
TCGTAGGTGGTCCCGCCGCCCTTGGTCTCGTCGCTTTTGATTTCGTCTGG
TTCTCGGGAGCTCCAGCCAGGAAACCAGTCGTGTGGAAGTGTATGTGTGG
AGGCCTATGTGCTTTGTTTTGGCGGATGTTGTCCGACCACTGGTG
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Synonyms
Publications